Wall clock time and date at job start Tue Mar 31 2020 13:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00011 * 2 1 4 4 H 1.48504 * 109.47157 * 240.00469 * 3 2 1 5 5 H 1.48505 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47318 * 120.00216 * 3 2 1 7 7 C 1.37872 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00137 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47381 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.46882 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.54759 * 68.37658 * 12 11 10 14 14 O 1.42097 * 110.54382 * 291.61800 * 12 11 10 15 15 N 1.65601 * 104.44643 * 179.97438 * 12 11 10 16 16 C 1.44748 * 119.59122 * 89.99787 * 15 12 11 17 17 C 1.54211 * 109.64536 * 277.68412 * 16 15 12 18 18 C 1.45736 * 113.00878 * 280.46655 * 17 16 15 19 19 S 1.81930 * 113.28977 * 65.64426 * 18 17 16 20 20 O 1.42100 * 108.54727 * 39.14888 * 19 18 17 21 21 O 1.42101 * 108.54523 * 170.04006 * 19 18 17 22 22 C 1.79958 * 102.17626 * 284.59494 * 19 18 17 23 23 C 1.46291 * 119.58919 * 269.97260 * 15 12 11 24 24 H 0.97000 * 119.99377 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47491 * 59.99409 * 9 7 2 26 26 H 1.09005 * 109.46957 * 300.00026 * 9 7 2 27 27 H 1.08996 * 109.47361 * 59.99222 * 10 9 7 28 28 H 1.09005 * 109.46991 * 299.99897 * 10 9 7 29 29 H 1.08992 * 109.46937 * 59.99608 * 11 10 9 30 30 H 1.08998 * 109.46926 * 299.99341 * 11 10 9 31 31 H 1.09000 * 109.44519 * 157.62525 * 16 15 12 32 32 H 1.09004 * 109.44316 * 37.73825 * 16 15 12 33 33 H 1.08998 * 108.77700 * 159.55608 * 17 16 15 34 34 H 1.09007 * 108.77364 * 41.37798 * 17 16 15 35 35 H 1.08997 * 108.72171 * 304.65829 * 18 17 16 36 36 H 1.09004 * 108.71939 * 186.62328 * 18 17 16 37 37 H 1.09004 * 109.19601 * 204.79056 * 22 19 18 38 38 H 1.09005 * 109.19063 * 324.06338 * 22 19 18 39 39 H 1.08993 * 108.34651 * 258.55733 * 23 15 12 40 40 H 1.09005 * 108.34271 * 15.60286 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6590 -6.3658 -0.0025 13 8 3.3558 -6.4267 1.2345 14 8 3.3557 -6.4258 -1.2395 15 7 1.7086 -7.7220 -0.0023 16 6 1.2980 -8.3072 -1.2609 17 6 0.0691 -7.5525 -1.8072 18 6 -1.1773 -7.9563 -1.1691 19 16 -1.2541 -7.5249 0.5967 20 8 -0.6645 -6.2444 0.7752 21 8 -2.5792 -7.7476 1.0591 22 6 -0.1747 -8.7602 1.3365 23 6 1.2949 -8.3140 1.2699 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 2.8713 -3.6047 0.8889 28 1 2.8726 -3.6040 -0.8910 29 1 0.8539 -5.0446 -0.8922 30 1 0.8533 -5.0450 0.8878 31 1 1.0413 -9.3553 -1.1072 32 1 2.1158 -8.2360 -1.9781 33 1 -0.0090 -7.7381 -2.8784 34 1 0.2146 -6.4839 -1.6483 35 1 -1.2887 -9.0358 -1.2707 36 1 -2.0069 -7.4716 -1.6839 37 1 -0.4583 -8.9059 2.3788 38 1 -0.2879 -9.7024 0.8001 39 1 1.9258 -9.1809 1.4661 40 1 1.4677 -7.5836 2.0604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318638926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:44 Heat of formation + Delta-G solvation = -172.771281 kcal Electronic energy + Delta-G solvation = -25335.270057 eV Core-core repulsion = 21596.476943 eV Total energy + Delta-G solvation = -3738.793115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.22346 -38.29967 -37.73812 -37.05491 -36.97702 -36.39640 -34.80751 -34.09500 -31.92847 -29.60744 -27.60480 -25.62617 -24.50785 -23.10388 -21.94830 -19.97367 -19.70684 -18.88237 -18.53492 -18.33032 -17.59772 -17.28301 -16.93773 -16.53854 -16.43472 -16.10167 -15.61082 -15.42226 -15.02071 -14.51159 -14.47915 -14.29557 -13.95773 -13.72163 -13.45581 -13.32013 -13.20185 -13.07881 -13.06078 -12.99128 -12.89049 -12.73673 -12.63192 -12.41726 -12.34186 -12.07558 -11.90685 -11.70125 -11.56590 -11.33741 -11.07156 -11.02168 -10.56078 -10.07342 -8.20431 -6.32730 -0.88402 -0.73456 1.39385 1.43317 1.51150 1.60276 1.88155 2.40717 2.75452 2.82499 2.93006 3.12042 3.15045 3.58531 3.64854 3.71852 3.86993 3.96211 4.02561 4.12926 4.25073 4.44961 4.49372 4.52823 4.64722 4.71668 4.82370 4.86860 4.98799 5.07330 5.12424 5.23472 5.36832 5.50093 5.62819 5.66999 5.82464 6.21124 6.83307 7.36366 8.91162 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.004179 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.432901 B = 6698.863334 C = 7622.608638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.035 3.965 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.618 3.382 13 O -0.987 6.987 14 O -0.979 6.979 15 N -0.998 5.998 16 C 0.086 3.914 17 C -0.151 4.151 18 C -0.575 4.575 19 S 2.387 3.613 20 O -0.973 6.973 21 O -0.992 6.992 22 C -0.608 4.608 23 C 0.127 3.873 24 H 0.264 0.736 25 H -0.001 1.001 26 H -0.004 1.004 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.179 0.821 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.186 0.814 39 H 0.119 0.881 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 -26.781 -2.459 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.145 4.145 11 C -0.739 4.739 12 S 2.714 3.286 13 O -0.977 6.977 14 O -0.969 6.969 15 N -0.836 5.836 16 C -0.039 4.039 17 C -0.191 4.191 18 C -0.707 4.707 19 S 2.576 3.424 20 O -0.970 6.970 21 O -0.989 6.989 22 C -0.741 4.741 23 C 0.001 3.999 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.014 0.986 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.196 0.804 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.203 0.797 39 H 0.136 0.864 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.415 -26.046 -2.018 26.162 hybrid contribution -0.400 1.026 -0.186 1.117 sum -1.814 -25.020 -2.204 25.182 Atomic orbital electron populations 1.70108 1.07828 1.27911 1.51377 1.26003 0.95810 1.03411 0.94523 0.85480 0.78290 0.77874 0.79284 1.18961 1.20596 1.19196 1.21737 0.93740 0.92460 1.51124 0.91981 1.18902 0.93944 0.91984 0.95532 1.21328 0.98481 0.93096 1.01582 1.30847 1.15765 1.12875 1.14437 1.04737 0.75471 0.75321 0.73048 1.93512 1.71522 1.86350 1.46325 1.93510 1.71272 1.86240 1.45901 1.57271 1.70174 1.43648 1.12543 1.21967 0.97355 1.00841 0.83729 1.20850 0.92445 1.01323 1.04503 1.28739 1.06462 1.15242 1.20225 1.08642 0.75335 0.77735 0.80704 1.93542 1.78470 1.39245 1.85792 1.93544 1.37338 1.87250 1.80760 1.30512 1.07401 1.19229 1.16967 1.20978 0.92974 1.02002 0.83968 0.92680 0.98220 0.98608 0.92011 0.91606 0.84370 0.82219 0.83733 0.87828 0.85538 0.92363 0.80363 0.83969 0.81429 0.79654 0.86353 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -33.05 9.11 25.60 0.23 -32.82 16 8 H 0.06 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.95 4.97 29.85 0.15 2.10 16 10 C -0.11 -4.73 5.16 30.59 0.16 -4.57 16 11 C -0.61 -21.61 4.32 71.98 0.31 -21.30 16 12 S 2.62 78.10 5.20 -56.49 -0.29 77.81 16 13 O -0.99 -34.55 16.73 -127.65 -2.14 -36.68 16 14 O -0.98 -32.59 16.61 -127.65 -2.12 -34.71 16 15 N -1.00 -17.69 2.24 -516.76 -1.16 -18.84 16 16 C 0.09 0.88 5.45 87.12 0.47 1.36 16 17 C -0.15 -1.67 5.30 28.78 0.15 -1.52 16 18 C -0.58 -4.63 5.61 69.76 0.39 -4.24 16 19 S 2.39 39.36 5.11 -56.49 -0.29 39.07 16 20 O -0.97 -26.24 12.27 -127.36 -1.56 -27.80 16 21 O -0.99 -24.43 18.09 -127.36 -2.30 -26.74 16 22 C -0.61 -4.03 5.87 72.23 0.42 -3.61 16 23 C 0.13 1.60 5.38 86.67 0.47 2.07 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 26 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 27 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 29 H 0.14 4.46 5.83 -2.39 -0.01 4.45 16 30 H 0.16 5.81 5.67 -2.39 -0.01 5.80 16 31 H 0.14 0.00 7.63 -2.39 -0.02 -0.02 16 32 H 0.10 1.26 7.04 -2.38 -0.02 1.24 16 33 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.02 4.96 -2.38 -0.01 1.00 16 35 H 0.18 -0.35 8.08 -2.40 -0.02 -0.37 16 36 H 0.14 1.14 8.14 -2.40 -0.02 1.12 16 37 H 0.17 0.67 8.14 -2.46 -0.02 0.65 16 38 H 0.19 -0.63 7.93 -2.46 -0.02 -0.65 16 39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.41 7.15 -2.38 -0.02 1.40 16 Total: -1.00 -92.44 332.48 -3.29 -95.72 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.04 Total: 4.86 kcal Atomic # 6 Polarization: -65.27 SS G_CDS: 3.22 Total: -62.05 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -0.87 Total: -77.19 kcal Atomic # 8 Polarization: -117.81 SS G_CDS: -8.12 Total: -125.93 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 117.46 SS G_CDS: -0.58 Total: 116.87 kcal Total: -92.44 -3.29 -95.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318638926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.047 kcal (2) G-P(sol) polarization free energy of solvation -92.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds