Wall clock time and date at job start Tue Mar 31 2020 13:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86810 * 119.99838 * 2 1 4 4 H 1.48496 * 109.46917 * 239.99973 * 3 2 1 5 5 H 1.48500 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46663 * 119.99769 * 3 2 1 7 7 C 1.39026 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99954 * 180.02562 * 7 2 1 9 9 N 1.36898 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00010 * 180.02562 * 9 7 2 11 11 O 1.21614 * 119.99984 * 359.97438 * 10 9 7 12 12 C 1.47557 * 119.99887 * 179.97438 * 10 9 7 13 13 C 1.41584 * 126.44993 * 179.97438 * 12 10 9 14 14 C 1.35335 * 105.55886 * 179.77752 * 13 12 10 15 15 N 1.35887 * 107.13616 * 0.40199 * 14 13 12 16 16 C 1.40095 * 124.95355 * 179.83724 * 15 14 13 17 17 C 1.38887 * 120.06571 * 359.72213 * 16 15 14 18 18 C 1.38090 * 119.92560 * 179.97438 * 17 16 15 19 19 C 1.38307 * 120.07110 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.13791 * 0.03035 * 19 18 17 21 21 C 1.38129 * 120.07104 * 359.68967 * 20 19 18 22 22 C 1.50699 * 120.03901 * 180.27721 * 21 20 19 23 23 F 1.39906 * 109.46934 * 0.28429 * 22 21 20 24 24 F 1.39903 * 109.47203 * 120.27911 * 22 21 20 25 25 F 1.39895 * 109.47195 * 240.28096 * 22 21 20 26 26 N 1.28483 * 110.08955 * 359.57691 * 15 14 13 27 27 H 0.97002 * 120.00201 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99594 * 359.97438 * 9 7 2 29 29 H 1.08002 * 127.21879 * 0.02905 * 13 12 10 30 30 H 1.07998 * 126.43195 * 180.24210 * 14 13 12 31 31 H 1.07995 * 120.03665 * 359.96124 * 17 16 15 32 32 H 1.08006 * 119.96446 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.92865 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.96725 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6965 -1.2125 5 1 1.2826 2.7465 0.0006 6 1 3.1014 1.6965 1.2126 7 6 2.0089 -1.2040 0.0005 8 1 3.0889 -1.2039 0.0010 9 7 1.3245 -2.3896 0.0005 10 6 1.9984 -3.5567 0.0016 11 8 3.2145 -3.5567 0.0021 12 6 1.2606 -4.8346 0.0022 13 6 1.8263 -6.1325 0.0027 14 6 0.7762 -6.9862 0.0082 15 7 -0.3536 -6.2312 0.0016 16 6 -1.6589 -6.7400 0.0010 17 6 -1.8707 -8.1126 0.0016 18 6 -3.1586 -8.6109 0.0015 19 6 -4.2368 -7.7447 0.0014 20 6 -4.0292 -6.3778 0.0007 21 6 -2.7434 -5.8730 0.0066 22 6 -2.5180 -4.3830 0.0121 23 9 -3.7524 -3.7246 0.0166 24 9 -1.7944 -4.0251 1.1547 25 9 -1.7979 -4.0161 -1.1298 26 7 -0.0501 -4.9828 0.0015 27 1 -0.4850 0.8400 -0.0004 28 1 0.3544 -2.3895 0.0005 29 1 2.8758 -6.3877 0.0033 30 1 0.8267 -8.0650 0.0138 31 1 -1.0292 -8.7894 0.0019 32 1 -3.3240 -9.6782 0.0016 33 1 -5.2431 -8.1370 0.0009 34 1 -4.8732 -5.7039 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337753317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:46 Heat of formation + Delta-G solvation = -43.675569 kcal Electronic energy + Delta-G solvation = -28008.546806 eV Core-core repulsion = 23494.899809 eV Total energy + Delta-G solvation = -4513.646997 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.59413 -47.19457 -46.90510 -42.56492 -39.52899 -37.77124 -34.02342 -33.61467 -32.41572 -31.31465 -30.36743 -29.46408 -26.17458 -25.24134 -23.83653 -22.86887 -21.41473 -20.77754 -19.22403 -18.81028 -18.00817 -17.88189 -17.74380 -17.41577 -16.18761 -15.94835 -15.57681 -15.24787 -14.83211 -14.55262 -13.93178 -13.90274 -13.78377 -13.44985 -13.44105 -13.40220 -13.23460 -13.09729 -13.02427 -12.86073 -12.84930 -12.43813 -11.89228 -11.55429 -11.38925 -11.08219 -10.43772 -10.40145 -10.18190 -10.14395 -9.63767 -9.52350 -8.96433 -8.60230 -8.28009 -7.98932 -6.46284 -3.80929 0.39486 0.69142 2.22606 2.40776 2.57409 2.97417 3.22673 3.26113 3.27295 3.30747 4.00846 4.14593 4.16566 4.32819 4.41443 4.58568 4.67188 4.81761 4.86475 4.88745 5.00412 5.13911 5.22713 5.36506 5.37024 5.73517 5.81281 5.82983 5.92054 6.05769 6.19476 6.34396 6.82502 7.04947 7.50108 8.00161 8.19423 8.61157 9.12201 9.53041 10.06058 10.69572 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.004634 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.131318 B = 6041.043317 C = 7434.661109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.026 3.974 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.298 4.298 8 H 0.109 0.891 9 N -0.525 5.525 10 C 0.499 3.501 11 O -0.593 6.593 12 C 0.053 3.947 13 C -0.170 4.170 14 C -0.026 4.026 15 N -0.266 5.266 16 C 0.208 3.792 17 C -0.143 4.143 18 C -0.065 4.065 19 C -0.136 4.136 20 C -0.051 4.051 21 C -0.187 4.187 22 C 0.521 3.479 23 F -0.187 7.187 24 F -0.159 7.159 25 F -0.159 7.159 26 N -0.279 5.279 27 H 0.276 0.724 28 H 0.401 0.599 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 -18.025 0.013 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.429 4.429 8 H 0.127 0.873 9 N -0.158 5.158 10 C 0.284 3.716 11 O -0.479 6.479 12 C -0.110 4.110 13 C -0.197 4.197 14 C -0.163 4.163 15 N -0.046 5.046 16 C 0.114 3.886 17 C -0.164 4.164 18 C -0.084 4.084 19 C -0.155 4.155 20 C -0.069 4.069 21 C -0.190 4.190 22 C 0.466 3.534 23 F -0.168 7.168 24 F -0.140 7.140 25 F -0.140 7.140 26 N -0.109 5.109 27 H 0.086 0.914 28 H 0.236 0.764 29 H 0.184 0.816 30 H 0.198 0.802 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.951 -17.212 0.011 20.955 hybrid contribution 0.536 0.494 0.002 0.729 sum -11.415 -16.719 0.012 20.244 Atomic orbital electron populations 1.69641 1.06162 1.28794 1.47320 1.25432 0.95656 1.00124 0.96624 0.85835 0.78792 0.79845 0.79290 1.19596 1.20784 1.19600 1.19821 0.93714 0.82061 1.47307 0.87320 1.41856 1.10050 1.04331 1.59560 1.16387 0.86463 0.81327 0.87449 1.90615 1.12373 1.86060 1.58827 1.22826 0.88410 0.96764 1.03022 1.21887 1.00054 0.90834 1.06911 1.22879 0.84944 0.98871 1.09582 1.42762 1.04133 1.04272 1.53453 1.17308 0.80546 0.92615 0.98107 1.20845 0.99096 0.91572 1.04847 1.21176 0.91205 1.00618 0.95368 1.21211 0.99908 0.92422 1.01937 1.21021 0.94952 0.96522 0.94440 1.19943 0.94514 0.92503 1.12077 1.17681 0.73724 0.86430 0.75550 1.93128 1.43884 1.83372 1.96434 1.93265 1.77782 1.92802 1.50173 1.93265 1.77938 1.92584 1.50192 1.73957 1.17691 0.97908 1.21330 0.91364 0.76375 0.81641 0.80221 0.83945 0.84136 0.84324 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.94 13.05 55.50 0.72 -24.21 16 2 C 0.03 0.72 5.50 -17.46 -0.10 0.63 16 3 Si 0.94 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.70 9.68 -15.00 -0.15 -8.84 16 8 H 0.11 3.22 7.15 -52.49 -0.38 2.84 16 9 N -0.52 -14.86 5.28 -11.92 -0.06 -14.92 16 10 C 0.50 13.45 7.77 -12.46 -0.10 13.35 16 11 O -0.59 -17.27 16.50 5.26 0.09 -17.18 16 12 C 0.05 1.20 7.12 -82.76 -0.59 0.61 16 13 C -0.17 -3.02 10.80 -39.34 -0.42 -3.45 16 14 C -0.03 -0.37 10.78 -16.79 -0.18 -0.55 16 15 N -0.27 -4.45 3.51 -10.55 -0.04 -4.49 16 16 C 0.21 2.86 6.58 -83.62 -0.55 2.31 16 17 C -0.14 -1.31 9.43 -39.40 -0.37 -1.68 16 18 C -0.07 -0.44 10.04 -39.61 -0.40 -0.84 16 19 C -0.14 -0.99 10.04 -39.55 -0.40 -1.39 16 20 C -0.05 -0.52 9.43 -39.61 -0.37 -0.89 16 21 C -0.19 -2.65 5.38 -104.44 -0.56 -3.21 16 22 C 0.52 9.37 2.78 36.00 0.10 9.47 16 23 F -0.19 -3.09 15.97 2.25 0.04 -3.06 16 24 F -0.16 -3.30 14.97 2.25 0.03 -3.27 16 25 F -0.16 -3.29 14.95 2.25 0.03 -3.26 16 26 N -0.28 -5.84 5.52 33.42 0.18 -5.66 16 27 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.40 11.41 7.61 -40.82 -0.31 11.10 16 29 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 30 H 0.18 1.59 6.96 -52.49 -0.37 1.23 16 31 H 0.14 0.93 6.65 -52.49 -0.35 0.58 16 32 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.15 1.28 7.16 -52.48 -0.38 0.91 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -35.08 313.97 -5.56 -40.63 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -2.18 Total: 8.91 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -4.09 Total: 5.51 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.81 Total: -49.28 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.09 Total: -17.18 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 0.10 Total: -9.59 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.08 -5.56 -40.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337753317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.041 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds