Wall clock time and date at job start Tue Mar 31 2020 13:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46932 * 299.99949 * 3 2 1 6 6 H 1.48498 * 109.47306 * 60.00033 * 3 2 1 7 7 C 1.37877 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46697 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47238 * 180.02562 * 11 10 9 13 13 O 1.42101 * 110.54650 * 68.37197 * 12 11 10 14 14 O 1.42101 * 110.53998 * 291.62623 * 12 11 10 15 15 N 1.65597 * 104.45432 * 179.97438 * 12 11 10 16 16 C 1.46506 * 119.99791 * 64.99519 * 15 12 11 17 17 C 1.53001 * 109.46867 * 165.00419 * 16 15 12 18 18 H 1.09001 * 110.70132 * 303.32275 * 17 16 15 19 19 C 1.55046 * 110.78779 * 180.02562 * 17 16 15 20 20 C 1.53884 * 106.62106 * 199.29665 * 19 17 16 21 21 C 1.54166 * 108.70651 * 47.17824 * 20 19 17 22 22 S 1.82921 * 105.08392 * 332.09177 * 21 20 19 23 23 O 1.42099 * 109.35326 * 248.72335 * 22 21 20 24 24 O 1.42107 * 109.35479 * 115.52232 * 22 21 20 25 25 H 0.97006 * 120.00532 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47101 * 59.99648 * 9 7 2 27 27 H 1.08998 * 109.46744 * 299.99613 * 9 7 2 28 28 H 1.09002 * 109.47138 * 60.00158 * 10 9 7 29 29 H 1.08998 * 109.47509 * 299.99632 * 10 9 7 30 30 H 1.09000 * 109.47627 * 60.00180 * 11 10 9 31 31 H 1.09004 * 109.47299 * 299.99900 * 11 10 9 32 32 H 0.96995 * 120.00100 * 245.27435 * 15 12 11 33 33 H 1.08998 * 109.47105 * 285.00387 * 16 15 12 34 34 H 1.09002 * 109.47033 * 45.00797 * 16 15 12 35 35 H 1.08998 * 110.02910 * 318.58297 * 19 17 16 36 36 H 1.08996 * 110.03328 * 80.00246 * 19 17 16 37 37 H 1.09001 * 109.64527 * 167.03050 * 20 19 17 38 38 H 1.08995 * 109.64342 * 287.32623 * 20 19 17 39 39 H 1.09001 * 110.31986 * 90.99035 * 21 20 19 40 40 H 1.08998 * 110.31889 * 213.18788 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3558 -6.4256 1.2389 14 8 3.3558 -6.4268 -1.2350 15 7 1.7087 -7.7220 0.0033 16 6 0.8489 -8.0151 -1.1461 17 6 0.3754 -9.4681 -1.0714 18 1 1.2257 -10.1485 -1.0246 19 6 -0.5382 -9.8117 -2.2761 20 6 -1.3371 -11.0656 -1.8791 21 6 -1.9088 -10.8595 -0.4622 22 16 -0.7422 -9.7155 0.3601 23 8 -0.0464 -10.4097 1.3863 24 8 -1.4079 -8.4949 0.6542 25 1 -0.4851 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.8533 -5.0452 -0.8886 31 1 0.8539 -5.0446 0.8914 32 1 1.7184 -8.3202 0.7668 33 1 -0.0149 -7.3503 -1.1325 34 1 1.4102 -7.8628 -2.0680 35 1 -1.2182 -8.9840 -2.4770 36 1 0.0685 -10.0192 -3.1575 37 1 -2.1534 -11.2187 -2.5849 38 1 -0.6808 -11.9358 -1.8864 39 1 -2.9019 -10.4133 -0.5160 40 1 -1.9479 -11.8088 0.0719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344081250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:11 Heat of formation + Delta-G solvation = -159.722549 kcal Electronic energy + Delta-G solvation = -23815.955933 eV Core-core repulsion = 20077.728653 eV Total energy + Delta-G solvation = -3738.227279 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -37.87643 -37.32316 -36.91041 -36.44307 -35.81235 -35.26745 -34.65492 -32.17160 -30.75980 -27.79858 -26.70418 -23.80771 -23.67968 -22.05936 -20.64106 -19.27350 -19.17611 -17.78550 -17.61494 -17.04237 -16.54792 -16.33384 -16.03628 -15.69436 -15.27267 -15.01821 -14.47894 -14.45298 -14.21662 -14.04480 -13.76905 -12.95048 -12.62977 -12.56841 -12.51250 -12.46097 -12.37023 -12.25714 -11.97186 -11.86234 -11.77130 -11.70545 -11.55626 -11.24126 -11.07395 -10.92193 -10.83173 -10.65068 -10.41303 -9.93825 -9.87075 -9.32983 -9.07644 -8.39145 -6.03648 -4.06657 -0.43642 0.40006 2.06702 2.67248 3.12840 3.30848 3.38332 3.43252 3.46637 3.78357 3.85488 3.95151 4.05313 4.16447 4.35621 4.38803 4.44171 4.53684 4.83085 4.95407 5.01148 5.13186 5.17930 5.21461 5.24429 5.31357 5.32825 5.35792 5.47082 5.91590 6.27897 6.46844 6.60895 6.89076 7.59992 7.69766 7.94566 8.34846 8.99841 9.57969 11.07560 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.002843 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.653901 B = 9844.813850 C =10377.149611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.600 3.400 13 O -0.957 6.957 14 O -0.959 6.959 15 N -1.137 6.137 16 C 0.135 3.865 17 C -0.560 4.560 18 H 0.153 0.847 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.597 4.597 22 S 2.375 3.625 23 O -0.934 6.934 24 O -0.918 6.918 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.413 0.587 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 -26.226 -5.708 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.696 3.304 13 O -0.948 6.948 14 O -0.949 6.949 15 N -0.895 5.895 16 C 0.007 3.993 17 C -0.671 4.671 18 H 0.171 0.829 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.727 4.727 22 S 2.557 3.443 23 O -0.931 6.931 24 O -0.915 6.915 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.246 0.754 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.157 0.843 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.525 -25.663 -4.949 26.525 hybrid contribution -0.434 0.402 -0.396 0.712 sum -4.959 -25.261 -5.345 26.292 Atomic orbital electron populations 1.69968 1.06074 1.26648 1.50672 1.25021 0.94883 0.99362 0.95145 0.86502 0.80183 0.83551 0.77592 1.19619 1.20978 1.20951 1.21293 0.93280 0.90881 1.50920 0.92322 1.19078 0.93538 0.90384 0.97873 1.21517 0.99402 0.91585 1.02028 1.30546 1.16259 1.15460 1.11785 1.05411 0.75553 0.75077 0.74335 1.93595 1.70488 1.85694 1.44982 1.93565 1.70105 1.85674 1.45574 1.55993 1.62789 1.43649 1.27028 1.21018 0.95640 0.91981 0.90631 1.30707 1.13348 1.05305 1.17735 0.82880 1.22329 0.97274 0.98609 0.97505 1.21904 1.00742 0.98940 0.93646 1.30555 1.15964 1.17080 1.09086 1.09733 0.79039 0.77360 0.78214 1.93636 1.72228 1.74604 1.52653 1.93670 1.73084 1.42033 1.82742 0.92959 0.96049 0.95965 0.91490 0.91515 0.85235 0.84770 0.75403 0.89135 0.87577 0.88687 0.87640 0.88618 0.89587 0.84276 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 10 C -0.11 -2.16 5.16 -26.73 -0.14 -2.29 16 11 C -0.61 -9.53 6.07 37.16 0.23 -9.30 16 12 S 2.60 38.63 5.46 -107.50 -0.59 38.05 16 13 O -0.96 -17.28 18.08 -57.54 -1.04 -18.32 16 14 O -0.96 -16.25 17.50 -57.54 -1.01 -17.26 16 15 N -1.14 -12.80 5.80 -10.61 -0.06 -12.86 16 16 C 0.13 1.13 5.40 -4.04 -0.02 1.11 16 17 C -0.56 -3.23 3.29 -25.65 -0.08 -3.31 16 18 H 0.15 0.65 8.14 -51.93 -0.42 0.22 16 19 C -0.12 -0.36 5.90 -25.19 -0.15 -0.51 16 20 C -0.11 -0.26 6.40 -25.66 -0.16 -0.43 16 21 C -0.60 -2.27 7.26 37.77 0.27 -1.99 16 22 S 2.37 18.64 5.33 -107.50 -0.57 18.07 16 23 O -0.93 -10.53 18.15 -57.71 -1.05 -11.57 16 24 O -0.92 -10.53 17.28 -57.71 -1.00 -11.52 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.13 1.73 8.14 -51.92 -0.42 1.30 16 31 H 0.13 1.96 8.14 -51.92 -0.42 1.54 16 32 H 0.41 4.25 8.22 -34.47 -0.28 3.96 16 33 H 0.09 0.66 7.68 -51.93 -0.40 0.26 16 34 H 0.11 0.79 7.70 -51.93 -0.40 0.39 16 35 H 0.09 0.23 8.08 -51.93 -0.42 -0.19 16 36 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 39 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -40.18 356.19 -10.95 -51.13 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.12 Total: -2.03 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: -0.61 Total: -29.76 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.67 Total: -38.83 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -4.09 Total: -58.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 57.28 SS G_CDS: -1.16 Total: 56.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -40.18 -10.95 -51.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344081250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.593 kcal (2) G-P(sol) polarization free energy of solvation -40.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds