Wall clock time and date at job start Tue Mar 31 2020 13:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46932 * 299.99949 * 3 2 1 6 6 H 1.48498 * 109.47306 * 60.00033 * 3 2 1 7 7 C 1.37877 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46697 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47238 * 180.02562 * 11 10 9 13 13 O 1.42101 * 110.54650 * 68.37197 * 12 11 10 14 14 O 1.42101 * 110.53998 * 291.62623 * 12 11 10 15 15 N 1.65597 * 104.45432 * 179.97438 * 12 11 10 16 16 C 1.46506 * 119.99791 * 64.99519 * 15 12 11 17 17 C 1.53001 * 109.46867 * 165.00419 * 16 15 12 18 18 H 1.09001 * 110.70132 * 303.32275 * 17 16 15 19 19 C 1.55046 * 110.78779 * 180.02562 * 17 16 15 20 20 C 1.53884 * 106.62106 * 199.29665 * 19 17 16 21 21 C 1.54166 * 108.70651 * 47.17824 * 20 19 17 22 22 S 1.82921 * 105.08392 * 332.09177 * 21 20 19 23 23 O 1.42099 * 109.35326 * 248.72335 * 22 21 20 24 24 O 1.42107 * 109.35479 * 115.52232 * 22 21 20 25 25 H 0.97006 * 120.00532 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47101 * 59.99648 * 9 7 2 27 27 H 1.08998 * 109.46744 * 299.99613 * 9 7 2 28 28 H 1.09002 * 109.47138 * 60.00158 * 10 9 7 29 29 H 1.08998 * 109.47509 * 299.99632 * 10 9 7 30 30 H 1.09000 * 109.47627 * 60.00180 * 11 10 9 31 31 H 1.09004 * 109.47299 * 299.99900 * 11 10 9 32 32 H 0.96995 * 120.00100 * 245.27435 * 15 12 11 33 33 H 1.08998 * 109.47105 * 285.00387 * 16 15 12 34 34 H 1.09002 * 109.47033 * 45.00797 * 16 15 12 35 35 H 1.08998 * 110.02910 * 318.58297 * 19 17 16 36 36 H 1.08996 * 110.03328 * 80.00246 * 19 17 16 37 37 H 1.09001 * 109.64527 * 167.03050 * 20 19 17 38 38 H 1.08995 * 109.64342 * 287.32623 * 20 19 17 39 39 H 1.09001 * 110.31986 * 90.99035 * 21 20 19 40 40 H 1.08998 * 110.31889 * 213.18788 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3558 -6.4256 1.2389 14 8 3.3558 -6.4268 -1.2350 15 7 1.7087 -7.7220 0.0033 16 6 0.8489 -8.0151 -1.1461 17 6 0.3754 -9.4681 -1.0714 18 1 1.2257 -10.1485 -1.0246 19 6 -0.5382 -9.8117 -2.2761 20 6 -1.3371 -11.0656 -1.8791 21 6 -1.9088 -10.8595 -0.4622 22 16 -0.7422 -9.7155 0.3601 23 8 -0.0464 -10.4097 1.3863 24 8 -1.4079 -8.4949 0.6542 25 1 -0.4851 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.8533 -5.0452 -0.8886 31 1 0.8539 -5.0446 0.8914 32 1 1.7184 -8.3202 0.7668 33 1 -0.0149 -7.3503 -1.1325 34 1 1.4102 -7.8628 -2.0680 35 1 -1.2182 -8.9840 -2.4770 36 1 0.0685 -10.0192 -3.1575 37 1 -2.1534 -11.2187 -2.5849 38 1 -0.6808 -11.9358 -1.8864 39 1 -2.9019 -10.4133 -0.5160 40 1 -1.9479 -11.8088 0.0719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344081250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:10 Heat of formation + Delta-G solvation = -193.491650 kcal Electronic energy + Delta-G solvation = -23817.420271 eV Core-core repulsion = 20077.728653 eV Total energy + Delta-G solvation = -3739.691618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.48752 -38.18945 -37.91264 -37.14794 -37.09968 -36.47493 -35.89028 -34.17074 -31.30234 -29.67168 -27.13148 -25.63943 -24.31815 -22.58193 -22.21209 -20.41796 -19.77569 -18.82522 -18.58528 -18.15903 -17.87649 -17.19840 -17.07959 -16.63897 -16.47658 -16.32804 -15.61530 -15.46049 -14.86063 -14.71846 -14.50890 -14.28262 -14.05448 -13.71155 -13.53960 -13.27491 -13.22851 -13.19712 -13.10399 -13.01902 -12.92045 -12.77622 -12.76775 -12.61483 -12.48736 -12.16704 -11.75862 -11.73415 -11.56150 -11.38863 -11.22072 -11.02544 -10.57896 -10.53909 -8.22296 -6.33461 -0.95582 -0.83071 1.39911 1.40551 1.53949 1.57231 1.63973 2.39998 2.61374 2.66359 2.94064 3.11151 3.14768 3.37164 3.49710 3.69882 3.77359 3.91093 3.91701 4.09018 4.12783 4.34542 4.38761 4.52678 4.60297 4.65174 4.77380 4.81862 4.95829 5.06552 5.10310 5.13687 5.22905 5.45902 5.62832 5.72393 5.79900 6.19631 6.82444 7.35883 8.89482 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.002843 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.653901 B = 9844.813850 C =10377.149611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.614 4.614 12 S 2.632 3.368 13 O -0.991 6.991 14 O -0.976 6.976 15 N -1.130 6.130 16 C 0.112 3.888 17 C -0.544 4.544 18 H 0.171 0.829 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.570 4.570 22 S 2.344 3.656 23 O -0.983 6.983 24 O -0.969 6.969 25 H 0.265 0.735 26 H 0.007 0.993 27 H 0.000 1.000 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.418 0.582 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 -27.724 -7.701 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.589 4.589 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.145 4.145 11 C -0.745 4.745 12 S 2.728 3.272 13 O -0.982 6.982 14 O -0.966 6.966 15 N -0.891 5.891 16 C -0.014 4.014 17 C -0.657 4.657 18 H 0.188 0.812 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.703 4.703 22 S 2.534 3.466 23 O -0.980 6.980 24 O -0.966 6.966 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.252 0.748 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.171 0.829 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.640 -27.136 -6.901 28.381 hybrid contribution -0.477 0.760 0.145 0.910 sum -5.117 -26.375 -6.756 27.704 Atomic orbital electron populations 1.70082 1.07661 1.27834 1.51426 1.25950 0.95819 1.03283 0.94595 0.85408 0.79057 0.78769 0.77889 1.18749 1.20081 1.20372 1.21767 0.93755 0.92448 1.50946 0.92082 1.18978 0.94047 0.91872 0.95984 1.21329 0.98673 0.92208 1.02319 1.30541 1.16708 1.13724 1.13487 1.04223 0.74957 0.74991 0.73060 1.93545 1.71769 1.86329 1.46522 1.93537 1.70769 1.86104 1.46192 1.55688 1.62880 1.42178 1.28328 1.21470 0.95834 0.94167 0.89909 1.30574 1.13761 1.03894 1.17464 0.81171 1.22503 0.97169 0.99376 0.96670 1.22060 1.01656 0.99052 0.92510 1.30368 1.14629 1.15773 1.09567 1.10236 0.79982 0.77284 0.79123 1.93569 1.73667 1.75039 1.55766 1.93603 1.74089 1.44674 1.84265 0.92634 0.97510 0.98199 0.91695 0.90874 0.82865 0.84052 0.74767 0.88199 0.86046 0.87928 0.85395 0.86302 0.87927 0.82938 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -31.70 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.11 -4.38 5.16 30.60 0.16 -4.22 16 11 C -0.61 -19.20 6.07 71.98 0.44 -18.76 16 12 S 2.63 77.21 5.46 -56.49 -0.31 76.91 16 13 O -0.99 -36.06 18.08 -127.65 -2.31 -38.37 16 14 O -0.98 -32.06 17.50 -127.65 -2.23 -34.29 16 15 N -1.13 -24.69 5.80 -187.48 -1.09 -25.78 16 16 C 0.11 1.70 5.40 86.38 0.47 2.17 16 17 C -0.54 -5.09 3.29 31.30 0.10 -4.99 16 18 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 19 C -0.12 -0.27 5.90 31.59 0.19 -0.09 16 20 C -0.11 -0.04 6.40 31.29 0.20 0.16 16 21 C -0.57 -2.75 7.26 72.38 0.53 -2.23 16 22 S 2.34 35.78 5.33 -56.49 -0.30 35.48 16 23 O -0.98 -22.87 18.15 -127.49 -2.31 -25.19 16 24 O -0.97 -22.91 17.28 -127.49 -2.20 -25.11 16 25 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 27 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.15 3.98 8.14 -2.39 -0.02 3.96 16 31 H 0.14 4.20 8.14 -2.39 -0.02 4.18 16 32 H 0.42 8.63 8.22 -96.75 -0.80 7.83 16 33 H 0.10 1.33 7.68 -2.39 -0.02 1.31 16 34 H 0.12 1.50 7.70 -2.39 -0.02 1.48 16 35 H 0.10 0.13 8.08 -2.39 -0.02 0.11 16 36 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -88.94 356.19 -5.28 -94.22 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.24 Total: 8.75 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 2.92 Total: -57.17 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -0.80 Total: -81.86 kcal Atomic # 8 Polarization: -113.90 SS G_CDS: -9.06 Total: -122.95 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 112.99 SS G_CDS: -0.61 Total: 112.38 kcal Total: -88.94 -5.28 -94.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344081250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.269 kcal (2) G-P(sol) polarization free energy of solvation -88.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds