Wall clock time and date at job start Tue Mar 31 2020 14:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.47050 * 2 1 4 4 C 1.34230 * 116.99730 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00356 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99537 * 180.27408 * 4 3 2 7 7 C 1.52997 * 109.46922 * 179.72577 * 6 4 3 8 8 H 1.08991 * 109.47357 * 54.99696 * 7 6 4 9 9 C 1.50700 * 109.46990 * 175.00039 * 7 6 4 10 10 H 1.08005 * 119.99585 * 239.99517 * 9 7 6 11 11 C 1.37877 * 120.00223 * 59.99659 * 9 7 6 12 12 N 1.31514 * 120.00134 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99953 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47070 * 90.00118 * 13 11 9 15 15 H 1.48497 * 109.47118 * 210.00075 * 13 11 9 16 16 H 1.48500 * 109.46946 * 329.99810 * 13 11 9 17 17 O 1.42904 * 109.47029 * 294.99342 * 7 6 4 18 18 C 1.34938 * 116.99825 * 149.99808 * 17 7 6 19 19 O 1.21649 * 120.00532 * 0.02562 * 18 17 7 20 20 C 1.41771 * 119.99744 * 180.02562 * 18 17 7 21 21 C 1.35364 * 119.99562 * 185.73053 * 20 18 17 22 22 C 1.46341 * 120.00415 * 7.63498 * 21 20 18 23 23 N 1.30850 * 125.55277 * 227.60050 * 22 21 20 24 24 C 1.30778 * 115.82459 * 179.97438 * 23 22 21 25 25 C 1.34203 * 115.79869 * 359.97438 * 24 23 22 26 26 S 1.71059 * 109.15202 * 359.72826 * 25 24 23 27 27 H 1.09005 * 109.46921 * 60.00827 * 1 2 3 28 28 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47146 * 300.00213 * 1 2 3 30 30 H 1.08996 * 109.47670 * 239.99759 * 2 1 3 31 31 H 1.09005 * 109.46921 * 119.99173 * 2 1 3 32 32 H 1.09009 * 109.47057 * 299.72332 * 6 4 3 33 33 H 1.08999 * 109.47243 * 59.71845 * 6 4 3 34 34 H 0.96996 * 120.00196 * 180.02562 * 12 11 9 35 35 H 1.07993 * 120.00275 * 5.72437 * 20 18 17 36 36 H 1.08005 * 119.99228 * 187.63222 * 21 20 18 37 37 H 1.08002 * 122.09891 * 180.02562 * 24 23 22 38 38 H 1.08002 * 125.42030 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0068 7 6 5.4486 2.8574 0.0130 8 1 5.7841 2.2520 -0.8289 9 6 6.0247 4.2449 -0.1045 10 1 6.6631 4.4955 -0.9389 11 6 5.7370 5.1943 0.8530 12 7 4.9601 4.8889 1.8692 13 14 6.4519 6.9140 0.7076 14 1 5.5211 7.7731 -0.0675 15 1 6.6414 7.4876 2.0641 16 1 7.7615 6.8483 0.0106 17 8 5.8893 2.2606 1.2344 18 6 7.0401 1.5572 1.1922 19 8 7.6523 1.4545 0.1460 20 6 7.5358 0.9379 2.3672 21 6 8.7459 0.3314 2.3536 22 6 9.6142 0.4570 1.1823 23 7 10.2344 -0.5288 0.5858 24 6 10.9638 -0.2001 -0.4487 25 6 10.9790 1.1048 -0.7617 26 16 9.9872 1.9579 0.3404 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.5885 3.4720 -0.8832 33 1 3.5809 3.4672 0.8968 34 1 4.7574 5.5569 2.5426 35 1 6.9481 0.9501 3.2731 36 1 9.0705 -0.2451 3.2072 37 1 11.5183 -0.9329 -1.0160 38 1 11.5262 1.5454 -1.5820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346439265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:43 Heat of formation + Delta-G solvation = -97.923237 kcal Electronic energy + Delta-G solvation = -25497.009818 eV Core-core repulsion = 21626.018407 eV Total energy + Delta-G solvation = -3870.991411 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91415 -39.44554 -38.83709 -36.40520 -35.56584 -33.31334 -33.10124 -31.59754 -30.34410 -29.38293 -26.41087 -25.65116 -23.57248 -22.98122 -21.60252 -20.08073 -19.75643 -19.28481 -17.61164 -17.26459 -16.89926 -16.24811 -16.10635 -15.53654 -15.38905 -14.87946 -14.57441 -14.47517 -14.07820 -13.86188 -13.50578 -13.03709 -12.86372 -12.74315 -12.64638 -12.28906 -11.94045 -11.80227 -11.49297 -11.30026 -11.11517 -11.05397 -10.86158 -10.76943 -10.35750 -10.14818 -9.91013 -9.79704 -9.69988 -9.45569 -9.10561 -8.97120 -8.77107 -8.59797 -7.58616 -6.27160 -4.44578 0.58785 1.69348 2.09839 2.31528 3.00114 3.15742 3.24973 3.26979 3.28056 3.32480 3.95147 4.10248 4.23745 4.54867 5.05433 5.08310 5.14940 5.38189 5.40034 5.46850 5.47478 5.56248 5.83969 5.85672 5.89400 5.93061 6.07192 6.18575 6.32601 6.33365 6.57674 6.62576 6.94389 7.00458 7.26443 7.64522 7.90637 7.95024 8.08927 8.49706 8.62081 9.04235 9.32444 10.75225 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.005165 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.118350 B = 5419.361472 C = 7554.230832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.102 4.102 7 C 0.229 3.771 8 H 0.045 0.955 9 C -0.546 4.546 10 H 0.069 0.931 11 C 0.082 3.918 12 N -0.862 5.862 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.315 6.315 18 C 0.481 3.519 19 O -0.516 6.516 20 C -0.146 4.146 21 C -0.007 4.007 22 C 0.046 3.954 23 N -0.457 5.457 24 C 0.017 3.983 25 C -0.315 4.315 26 S 0.279 5.721 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.267 0.733 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -5.509 0.686 5.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.175 3.825 8 H 0.063 0.937 9 C -0.583 4.583 10 H 0.087 0.913 11 C -0.125 4.125 12 N -0.497 5.497 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.195 1.195 17 O -0.229 6.229 18 C 0.327 3.673 19 O -0.411 6.411 20 C -0.170 4.170 21 C -0.029 4.029 22 C -0.225 4.225 23 N -0.171 5.171 24 C -0.141 4.141 25 C -0.457 4.457 26 S 0.540 5.460 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.077 0.923 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.179 0.821 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.725 -5.201 0.845 5.319 hybrid contribution 0.748 0.042 -0.768 1.073 sum 1.473 -5.158 0.077 5.365 Atomic orbital electron populations 1.21777 0.93283 1.02328 1.03324 1.22859 0.94856 0.81791 1.02047 1.86578 1.26129 1.30982 1.84726 1.24938 0.79491 0.94341 0.71144 1.90603 1.60225 1.43676 1.45878 1.21898 0.96821 0.88061 1.07211 1.19657 0.88107 0.92600 0.82127 0.93746 1.21380 1.32121 0.94416 1.10421 0.91285 1.25086 0.93894 0.98984 0.94492 1.69860 1.34344 1.34495 1.11042 0.86554 0.79960 0.83678 0.77730 1.20161 1.20828 1.19519 1.86298 1.36309 1.59016 1.41309 1.19861 0.81449 0.77020 0.88955 1.90871 1.56547 1.60133 1.33590 1.21936 0.96438 0.99613 0.99044 1.21452 0.91327 0.95668 0.94453 1.25942 1.02760 0.92505 1.01314 1.66988 1.08790 1.32441 1.08928 1.21372 1.01685 0.94564 0.96508 1.26679 1.09455 1.00015 1.09516 1.83989 1.30928 1.10733 1.20348 0.91714 0.90846 0.91584 0.91902 0.91730 0.87963 0.84194 0.92255 0.83321 0.82854 0.82091 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.74 10.22 -39.26 -0.40 -7.14 16 4 C 0.46 9.72 7.84 36.01 0.28 10.01 16 5 O -0.52 -12.18 15.17 -24.05 -0.36 -12.54 16 6 C -0.10 -2.28 5.22 -27.88 -0.15 -2.43 16 7 C 0.23 5.69 1.62 -27.88 -0.05 5.64 16 8 H 0.04 1.17 6.93 -51.93 -0.36 0.81 16 9 C -0.55 -14.11 8.90 -34.44 -0.31 -14.41 16 10 H 0.07 1.81 7.81 -52.48 -0.41 1.39 16 11 C 0.08 2.06 5.24 -17.82 -0.09 1.97 16 12 N -0.86 -21.93 10.93 55.43 0.61 -21.33 16 13 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 O -0.32 -7.82 8.37 -46.49 -0.39 -8.21 16 18 C 0.48 10.93 7.33 32.08 0.24 11.16 16 19 O -0.52 -12.40 10.64 -19.38 -0.21 -12.61 16 20 C -0.15 -2.61 9.99 -39.26 -0.39 -3.01 16 21 C -0.01 -0.12 10.23 -37.35 -0.38 -0.50 16 22 C 0.05 0.84 5.77 -14.71 -0.08 0.75 16 23 N -0.46 -8.38 10.67 -11.71 -0.12 -8.51 16 24 C 0.02 0.28 11.24 -19.42 -0.22 0.06 16 25 C -0.32 -4.96 11.08 29.31 0.32 -4.63 16 26 S 0.28 5.02 19.61 -107.50 -2.11 2.91 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 32 H 0.10 2.09 8.14 -51.92 -0.42 1.66 16 33 H 0.14 3.31 6.22 -51.93 -0.32 2.99 16 34 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 35 H 0.15 2.24 8.06 -52.49 -0.42 1.81 16 36 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 37 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 38 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -31.25 347.76 -7.44 -38.69 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.45 Total: 4.48 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.21 Total: 4.47 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.48 Total: -29.83 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.36 Total: -40.50 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -2.11 Total: 2.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.25 -7.44 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346439265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.233 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds