Wall clock time and date at job start Tue Mar 31 2020 14:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.47050 * 2 1 4 4 C 1.34230 * 116.99730 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00356 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99537 * 180.27408 * 4 3 2 7 7 C 1.52997 * 109.46922 * 179.72577 * 6 4 3 8 8 H 1.08991 * 109.47357 * 54.99696 * 7 6 4 9 9 C 1.50700 * 109.46990 * 175.00039 * 7 6 4 10 10 H 1.08005 * 119.99585 * 239.99517 * 9 7 6 11 11 C 1.37877 * 120.00223 * 59.99659 * 9 7 6 12 12 N 1.31514 * 120.00134 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99953 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47070 * 90.00118 * 13 11 9 15 15 H 1.48497 * 109.47118 * 210.00075 * 13 11 9 16 16 H 1.48500 * 109.46946 * 329.99810 * 13 11 9 17 17 O 1.42904 * 109.47029 * 294.99342 * 7 6 4 18 18 C 1.34938 * 116.99825 * 149.99808 * 17 7 6 19 19 O 1.21649 * 120.00532 * 0.02562 * 18 17 7 20 20 C 1.41771 * 119.99744 * 180.02562 * 18 17 7 21 21 C 1.35364 * 119.99562 * 185.73053 * 20 18 17 22 22 C 1.46341 * 120.00415 * 7.63498 * 21 20 18 23 23 N 1.30850 * 125.55277 * 227.60050 * 22 21 20 24 24 C 1.30778 * 115.82459 * 179.97438 * 23 22 21 25 25 C 1.34203 * 115.79869 * 359.97438 * 24 23 22 26 26 S 1.71059 * 109.15202 * 359.72826 * 25 24 23 27 27 H 1.09005 * 109.46921 * 60.00827 * 1 2 3 28 28 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47146 * 300.00213 * 1 2 3 30 30 H 1.08996 * 109.47670 * 239.99759 * 2 1 3 31 31 H 1.09005 * 109.46921 * 119.99173 * 2 1 3 32 32 H 1.09009 * 109.47057 * 299.72332 * 6 4 3 33 33 H 1.08999 * 109.47243 * 59.71845 * 6 4 3 34 34 H 0.96996 * 120.00196 * 180.02562 * 12 11 9 35 35 H 1.07993 * 120.00275 * 5.72437 * 20 18 17 36 36 H 1.08005 * 119.99228 * 187.63222 * 21 20 18 37 37 H 1.08002 * 122.09891 * 180.02562 * 24 23 22 38 38 H 1.08002 * 125.42030 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0068 7 6 5.4486 2.8574 0.0130 8 1 5.7841 2.2520 -0.8289 9 6 6.0247 4.2449 -0.1045 10 1 6.6631 4.4955 -0.9389 11 6 5.7370 5.1943 0.8530 12 7 4.9601 4.8889 1.8692 13 14 6.4519 6.9140 0.7076 14 1 5.5211 7.7731 -0.0675 15 1 6.6414 7.4876 2.0641 16 1 7.7615 6.8483 0.0106 17 8 5.8893 2.2606 1.2344 18 6 7.0401 1.5572 1.1922 19 8 7.6523 1.4545 0.1460 20 6 7.5358 0.9379 2.3672 21 6 8.7459 0.3314 2.3536 22 6 9.6142 0.4570 1.1823 23 7 10.2344 -0.5288 0.5858 24 6 10.9638 -0.2001 -0.4487 25 6 10.9790 1.1048 -0.7617 26 16 9.9872 1.9579 0.3404 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.5885 3.4720 -0.8832 33 1 3.5809 3.4672 0.8968 34 1 4.7574 5.5569 2.5426 35 1 6.9481 0.9501 3.2731 36 1 9.0705 -0.2451 3.2072 37 1 11.5183 -0.9329 -1.0160 38 1 11.5262 1.5454 -1.5820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346439265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:43 Heat of formation + Delta-G solvation = -115.561245 kcal Electronic energy + Delta-G solvation = -25497.774659 eV Core-core repulsion = 21626.018407 eV Total energy + Delta-G solvation = -3871.756253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59400 -41.04735 -40.25802 -38.05597 -37.26023 -35.00264 -34.75858 -32.89753 -31.99615 -30.73601 -28.21894 -27.13059 -25.11396 -24.26611 -23.14898 -21.60953 -21.36010 -20.76650 -19.24656 -18.91485 -18.49993 -17.90088 -17.57203 -17.24842 -16.96793 -16.57463 -16.28349 -15.87955 -15.54801 -15.24325 -14.81689 -14.55495 -14.40032 -14.12195 -13.93213 -13.68460 -13.42164 -13.35843 -12.95323 -12.90797 -12.79512 -12.60202 -12.46457 -12.28826 -12.06525 -11.53219 -11.49706 -11.46325 -11.33971 -11.19900 -10.74839 -10.67261 -10.51813 -10.11946 -9.01414 -8.18964 -6.43955 -0.79004 0.35893 0.73986 0.98213 1.29387 1.42740 1.46317 1.55190 1.82249 1.91980 2.33176 2.41300 2.47125 3.14885 3.26732 3.93767 4.00545 4.12302 4.14973 4.17712 4.33384 4.34932 4.49650 4.52180 4.58387 4.63273 4.81459 4.87580 4.93081 4.94670 5.14042 5.19178 5.33455 5.39236 5.51600 5.68321 5.99418 6.14856 6.62495 6.73812 6.86457 7.22818 7.38386 8.83241 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.005165 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.118350 B = 5419.361472 C = 7554.230832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.543 6.543 6 C -0.096 4.096 7 C 0.232 3.768 8 H 0.015 0.985 9 C -0.569 4.569 10 H 0.054 0.946 11 C 0.052 3.948 12 N -0.876 5.876 13 Si 0.951 3.049 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.276 1.276 17 O -0.332 6.332 18 C 0.467 3.533 19 O -0.539 6.539 20 C -0.173 4.173 21 C 0.023 3.977 22 C 0.028 3.972 23 N -0.469 5.469 24 C 0.005 3.995 25 C -0.301 4.301 26 S 0.230 5.770 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.272 0.728 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.194 0.806 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -6.026 1.185 6.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.134 4.134 7 C 0.179 3.821 8 H 0.033 0.967 9 C -0.606 4.606 10 H 0.072 0.928 11 C -0.154 4.154 12 N -0.512 5.512 13 Si 0.775 3.225 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.201 1.201 17 O -0.246 6.246 18 C 0.316 3.684 19 O -0.435 6.435 20 C -0.197 4.197 21 C 0.002 3.998 22 C -0.243 4.243 23 N -0.184 5.184 24 C -0.152 4.152 25 C -0.441 4.441 26 S 0.490 5.510 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.193 0.807 36 H 0.220 0.780 37 H 0.211 0.789 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.671 -5.729 1.344 5.922 hybrid contribution 0.814 0.080 -0.998 1.290 sum 1.484 -5.649 0.346 5.851 Atomic orbital electron populations 1.21806 0.89809 1.04442 1.03757 1.23288 0.97520 0.79691 1.02043 1.86549 1.24110 1.33524 1.83972 1.24582 0.80391 0.93480 0.70584 1.90586 1.61150 1.44313 1.47281 1.21704 0.95461 0.88983 1.07222 1.19489 0.89486 0.91683 0.81488 0.96657 1.21414 1.32930 0.95490 1.10735 0.92818 1.25619 0.93999 1.01821 0.93957 1.69935 1.34515 1.35510 1.11228 0.85682 0.79058 0.79860 0.77884 1.19077 1.20133 1.20148 1.86275 1.37560 1.59842 1.40939 1.20736 0.80646 0.76654 0.90411 1.90859 1.56796 1.60965 1.34836 1.22012 0.97991 1.01346 0.98351 1.22020 0.89656 0.93401 0.94749 1.26351 1.03539 0.92247 1.02190 1.67022 1.09140 1.32557 1.09729 1.21922 1.01494 0.95497 0.96279 1.26980 1.08394 0.99547 1.09226 1.84182 1.32582 1.12304 1.21973 0.91137 0.87840 0.91286 0.91831 0.91955 0.86701 0.85297 0.91855 0.80701 0.78044 0.78920 0.78373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.29 71.98 0.74 -1.99 16 2 C 0.05 1.37 6.19 71.98 0.45 1.82 16 3 O -0.36 -13.32 10.22 -51.41 -0.53 -13.85 16 4 C 0.46 20.17 7.84 71.24 0.56 20.72 16 5 O -0.54 -26.30 15.17 27.04 0.41 -25.89 16 6 C -0.10 -4.41 5.22 29.85 0.16 -4.25 16 7 C 0.23 12.03 1.62 29.85 0.05 12.08 16 8 H 0.02 0.86 6.93 -2.39 -0.02 0.84 16 9 C -0.57 -30.35 8.90 25.60 0.23 -30.12 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 11 C 0.05 2.61 5.24 84.65 0.44 3.05 16 12 N -0.88 -44.88 10.93 21.45 0.23 -44.65 16 13 Si 0.95 40.21 29.54 68.60 2.03 42.23 16 14 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 15 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 O -0.33 -16.99 8.37 -53.43 -0.45 -17.43 16 18 C 0.47 21.82 7.33 68.69 0.50 22.32 16 19 O -0.54 -26.77 10.64 19.35 0.21 -26.57 16 20 C -0.17 -6.12 9.99 22.48 0.22 -5.90 16 21 C 0.02 0.69 10.23 23.72 0.24 0.93 16 22 C 0.03 0.99 5.77 86.95 0.50 1.49 16 23 N -0.47 -16.58 10.67 -190.95 -2.04 -18.62 16 24 C 0.01 0.16 11.24 83.93 0.94 1.11 16 25 C -0.30 -9.08 11.08 66.90 0.74 -8.34 16 26 S 0.23 8.32 19.61 -56.49 -1.11 7.21 16 27 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 31 H 0.06 1.81 8.13 -2.38 -0.02 1.79 16 32 H 0.12 4.82 8.14 -2.38 -0.02 4.80 16 33 H 0.13 6.25 6.22 -2.39 -0.01 6.23 16 34 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 35 H 0.18 5.08 8.06 -2.91 -0.02 5.06 16 36 H 0.20 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.19 4.52 8.06 -2.91 -0.02 4.49 16 38 H 0.20 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -69.34 347.76 5.62 -63.72 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.09 Total: 20.91 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 5.78 Total: 12.93 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.80 Total: -63.27 kcal Atomic # 8 Polarization: -83.38 SS G_CDS: -0.36 Total: -83.73 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 8.32 SS G_CDS: -1.11 Total: 7.21 kcal Total: -69.34 5.62 -63.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346439265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.843 kcal (2) G-P(sol) polarization free energy of solvation -69.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds