Wall clock time and date at job start Tue Mar 31 2020 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47025 * 2 1 4 4 C 1.50701 * 109.47260 * 240.00079 * 2 1 3 5 5 H 1.08001 * 119.99997 * 239.99905 * 4 2 1 6 6 C 1.37874 * 119.99564 * 60.00044 * 4 2 1 7 7 N 1.31510 * 120.00624 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99696 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47142 * 59.99883 * 8 6 4 10 10 H 1.48507 * 109.46959 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47296 * 299.99875 * 8 6 4 12 12 N 1.46501 * 109.47069 * 120.00116 * 2 1 3 13 13 S 1.65608 * 120.00079 * 264.99907 * 12 2 1 14 14 O 1.42095 * 104.27841 * 181.07390 * 13 12 2 15 15 O 1.42102 * 104.27658 * 308.93104 * 13 12 2 16 16 C 1.81406 * 104.44741 * 65.00031 * 13 12 2 17 17 C 1.52991 * 109.46937 * 179.97438 * 16 13 12 18 18 H 1.09005 * 109.38979 * 304.79011 * 17 16 13 19 19 C 1.52589 * 109.38432 * 185.00129 * 17 16 13 20 20 C 1.52590 * 110.64323 * 169.85561 * 19 17 16 21 21 C 1.53040 * 109.98337 * 69.98574 * 20 19 17 22 22 S 1.81661 * 109.00097 * 296.35033 * 21 20 19 23 23 O 1.42102 * 108.66576 * 168.62742 * 22 21 20 24 24 O 1.42097 * 108.66441 * 299.87427 * 22 21 20 25 25 C 1.53033 * 109.38691 * 64.47596 * 17 16 13 26 26 H 1.08998 * 109.46988 * 59.99914 * 1 2 3 27 27 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99674 * 1 2 3 29 29 H 0.96999 * 120.00488 * 180.02562 * 7 6 4 30 30 H 0.97002 * 120.00027 * 85.00418 * 12 2 1 31 31 H 1.09000 * 109.47167 * 300.00580 * 16 13 12 32 32 H 1.09000 * 109.46895 * 59.99901 * 16 13 12 33 33 H 1.08999 * 109.24304 * 290.15718 * 19 17 16 34 34 H 1.09005 * 109.24181 * 49.55837 * 19 17 16 35 35 H 1.09000 * 109.38861 * 190.14710 * 20 19 17 36 36 H 1.09000 * 109.38678 * 309.82937 * 20 19 17 37 37 H 1.08997 * 109.54731 * 56.21150 * 21 20 19 38 38 H 1.09005 * 109.54455 * 176.40132 * 21 20 19 39 39 H 1.08999 * 109.54993 * 303.66083 * 25 17 16 40 40 H 1.09008 * 109.54899 * 63.94942 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0079 9 1 1.8282 -2.5196 -4.0082 10 1 1.8269 -0.4197 -5.2205 11 1 3.8076 -1.1188 -4.0077 12 7 2.0183 -0.6906 1.1962 13 16 2.4122 0.1771 2.5506 14 8 2.8607 -0.8029 3.4766 15 8 3.2875 1.1906 2.0751 16 6 0.8407 0.8989 3.0986 17 6 1.0751 1.7339 4.3589 18 1 1.5555 1.1164 5.1180 19 6 -0.2642 2.2376 4.8890 20 6 -0.0960 2.8582 6.2728 21 6 0.6721 4.1775 6.1644 22 16 2.3461 3.8382 5.5459 23 8 2.9608 5.0712 5.1977 24 8 3.0007 2.9684 6.4592 25 6 1.9832 2.9186 4.0218 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7081 1.1609 -3.4843 30 1 2.1110 -1.6562 1.1948 31 1 0.4386 1.5351 2.3102 32 1 0.1315 0.1009 3.3185 33 1 -0.6623 2.9872 4.2051 34 1 -0.9624 1.4029 4.9521 35 1 -1.0780 3.0458 6.7070 36 1 0.4556 2.1701 6.9133 37 1 0.1561 4.8442 5.4736 38 1 0.7326 4.6459 7.1468 39 1 2.9130 2.5531 3.5861 40 1 1.4789 3.5742 3.3116 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363964529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:02 Heat of formation + Delta-G solvation = -185.629564 kcal Electronic energy + Delta-G solvation = -24843.796035 eV Core-core repulsion = 21104.445343 eV Total energy + Delta-G solvation = -3739.350692 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.00261 -38.18590 -37.92189 -37.26881 -37.12026 -36.97087 -34.12369 -33.99862 -30.07257 -29.28705 -28.31319 -27.18345 -23.73737 -22.79654 -21.68909 -20.29124 -19.87302 -19.16786 -18.16794 -17.83373 -17.56982 -17.20675 -17.09738 -16.72402 -16.45902 -16.08019 -15.39704 -15.13257 -14.71820 -14.59309 -14.27912 -14.08438 -13.96384 -13.66227 -13.52365 -13.27755 -13.18186 -13.12124 -13.08332 -12.94958 -12.82844 -12.77955 -12.52348 -12.39364 -12.28152 -12.19117 -11.98803 -11.80191 -11.62494 -11.57688 -11.09147 -10.94670 -10.57566 -10.02039 -8.15824 -6.28199 -0.98123 -0.63816 1.43825 1.45573 1.52241 1.69637 1.90300 2.43282 2.67569 2.82705 2.87532 3.14338 3.25057 3.35374 3.52098 3.57730 3.78004 3.91588 4.10636 4.15790 4.39755 4.48534 4.54757 4.59505 4.71549 4.77596 4.88682 4.95677 5.04312 5.11637 5.18901 5.22041 5.37303 5.59259 5.81158 6.07909 6.15572 6.42328 6.81196 7.40876 8.88879 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.003504 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.281060 B = 7989.702811 C = 8027.954494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.266 3.734 3 H 0.024 0.976 4 C -0.546 4.546 5 H 0.057 0.943 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.280 1.280 12 N -1.107 6.107 13 S 2.587 3.413 14 O -1.001 7.001 15 O -1.002 7.002 16 C -0.598 4.598 17 C -0.070 4.070 18 H 0.101 0.899 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.571 4.571 22 S 2.410 3.590 23 O -0.986 6.986 24 O -0.979 6.979 25 C -0.655 4.655 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.266 0.734 30 H 0.412 0.588 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 5.038 16.886 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.160 3.840 3 H 0.042 0.958 4 C -0.586 4.586 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.865 5.865 13 S 2.686 3.314 14 O -0.991 6.991 15 O -0.992 6.992 16 C -0.733 4.733 17 C -0.091 4.091 18 H 0.119 0.881 19 C -0.167 4.167 20 C -0.155 4.155 21 C -0.705 4.705 22 S 2.598 3.402 23 O -0.983 6.983 24 O -0.976 6.976 25 C -0.783 4.783 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.177 0.823 32 H 0.196 0.804 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.186 0.814 38 H 0.176 0.824 39 H 0.140 0.860 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.964 5.656 17.437 20.405 hybrid contribution -0.198 -0.921 -1.808 2.038 sum -9.163 4.735 15.629 18.725 Atomic orbital electron populations 1.22238 0.96608 1.00809 1.01779 1.18402 0.92090 0.91706 0.81769 0.95837 1.21579 1.32066 1.13345 0.91568 0.92493 1.25575 0.95120 0.95719 1.01515 1.69925 1.36893 1.23421 1.24578 0.85654 0.78400 0.79009 0.78816 1.19294 1.20579 1.20625 1.55370 1.84296 1.19288 1.27590 1.05222 0.78849 0.74193 0.73182 1.93517 1.81616 1.59676 1.64340 1.93510 1.64215 1.61545 1.79899 1.30614 1.21255 1.13208 1.08208 1.20831 0.98912 0.93705 0.95690 0.88068 1.21863 0.93910 1.04064 0.96813 1.21472 1.03785 0.92314 0.97927 1.30045 1.17085 1.08534 1.14821 1.08016 0.80526 0.74624 0.77030 1.93538 1.76259 1.44184 1.84315 1.93534 1.74425 1.67891 1.61745 1.30951 1.10654 1.13072 1.23591 0.91181 0.93974 0.92524 0.92469 0.75426 0.82331 0.80423 0.87686 0.86770 0.85633 0.89767 0.81433 0.82369 0.86030 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.10 9.26 71.98 0.67 -5.43 16 2 C 0.27 12.13 2.80 44.25 0.12 12.25 16 3 H 0.02 1.21 7.48 -2.39 -0.02 1.19 16 4 C -0.55 -28.53 8.76 25.60 0.22 -28.31 16 5 H 0.06 2.96 7.81 -2.91 -0.02 2.93 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -48.50 11.32 21.45 0.24 -48.26 16 8 Si 0.96 41.90 29.54 68.60 2.03 43.93 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 N -1.11 -42.62 5.35 -172.51 -0.92 -43.54 16 13 S 2.59 90.35 5.08 -56.49 -0.29 90.06 16 14 O -1.00 -38.81 18.08 -127.65 -2.31 -41.12 16 15 O -1.00 -43.23 15.05 -127.65 -1.92 -45.16 16 16 C -0.60 -12.57 4.64 71.98 0.33 -12.23 16 17 C -0.07 -1.25 2.02 -10.92 -0.02 -1.27 16 18 H 0.10 1.83 8.01 -2.38 -0.02 1.82 16 19 C -0.13 -1.03 4.93 30.32 0.15 -0.88 16 20 C -0.12 -0.73 5.73 30.47 0.17 -0.56 16 21 C -0.57 -4.44 6.35 72.00 0.46 -3.98 16 22 S 2.41 49.86 5.30 -56.49 -0.30 49.56 16 23 O -0.99 -28.42 18.10 -127.38 -2.31 -30.72 16 24 O -0.98 -27.69 17.95 -127.38 -2.29 -29.98 16 25 C -0.65 -14.09 5.40 71.99 0.39 -13.70 16 26 H 0.07 3.17 6.07 -2.39 -0.01 3.16 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.66 5.78 -2.39 -0.01 1.64 16 29 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.41 14.92 8.79 -96.74 -0.85 14.07 16 31 H 0.16 3.01 6.77 -2.39 -0.02 2.99 16 32 H 0.18 2.45 8.10 -2.39 -0.02 2.43 16 33 H 0.10 0.46 8.09 -2.39 -0.02 0.44 16 34 H 0.11 0.51 8.06 -2.38 -0.02 0.49 16 35 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.08 0.65 8.02 -2.39 -0.02 0.63 16 37 H 0.17 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.16 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.12 3.50 5.36 -2.39 -0.01 3.48 16 40 H 0.17 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -83.08 339.65 -4.91 -87.99 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.21 Total: 19.79 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 2.95 Total: -52.55 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -0.68 Total: -91.80 kcal Atomic # 8 Polarization: -138.16 SS G_CDS: -8.82 Total: -146.98 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 140.21 SS G_CDS: -0.59 Total: 139.63 kcal Total: -83.08 -4.91 -87.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363964529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.644 kcal (2) G-P(sol) polarization free energy of solvation -83.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds