Wall clock time and date at job start Tue Mar 31 2020 14:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47171 * 2 1 4 4 C 1.50699 * 109.47433 * 120.00242 * 2 1 3 5 5 H 1.07992 * 120.00081 * 120.00001 * 4 2 1 6 6 C 1.37881 * 119.99644 * 299.99872 * 4 2 1 7 7 N 1.31516 * 120.00426 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47477 * 60.00142 * 8 6 4 10 10 H 1.48500 * 109.47063 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47400 * 300.00371 * 8 6 4 12 12 N 1.46504 * 109.47169 * 240.00342 * 2 1 3 13 13 S 1.65602 * 120.00080 * 94.99738 * 12 2 1 14 14 O 1.42098 * 104.27676 * 308.93070 * 13 12 2 15 15 O 1.42101 * 104.27603 * 181.07274 * 13 12 2 16 16 C 1.81394 * 104.44915 * 65.00044 * 13 12 2 17 17 C 1.53006 * 109.47336 * 180.02562 * 16 13 12 18 18 H 1.09002 * 109.29498 * 304.73751 * 17 16 13 19 19 C 1.52586 * 109.38854 * 185.00034 * 17 16 13 20 20 C 1.52588 * 110.64244 * 169.85337 * 19 17 16 21 21 C 1.53039 * 109.98505 * 69.98844 * 20 19 17 22 22 S 1.81677 * 108.99696 * 296.35160 * 21 20 19 23 23 O 1.42093 * 108.65977 * 168.63219 * 22 21 20 24 24 O 1.42104 * 108.66015 * 299.87115 * 22 21 20 25 25 C 1.53036 * 109.38325 * 64.47393 * 17 16 13 26 26 H 1.09004 * 109.46733 * 299.99676 * 1 2 3 27 27 H 1.08992 * 109.47233 * 59.99876 * 1 2 3 28 28 H 1.08996 * 109.46841 * 180.02562 * 1 2 3 29 29 H 0.96991 * 119.99927 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99824 * 274.99782 * 12 2 1 31 31 H 1.09001 * 109.47119 * 59.99802 * 16 13 12 32 32 H 1.09000 * 109.47217 * 299.99557 * 16 13 12 33 33 H 1.08999 * 109.24273 * 290.15470 * 19 17 16 34 34 H 1.08999 * 109.23905 * 49.55237 * 19 17 16 35 35 H 1.08995 * 109.38229 * 190.14158 * 20 19 17 36 36 H 1.09004 * 109.38449 * 309.82880 * 20 19 17 37 37 H 1.08997 * 109.54846 * 56.20453 * 21 20 19 38 38 H 1.08995 * 109.54822 * 176.40193 * 21 20 19 39 39 H 1.08999 * 109.55048 * 303.66298 * 25 17 16 40 40 H 1.08997 * 109.55200 * 63.95309 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3215 -1.1204 4.0078 9 1 3.8065 -1.1210 4.0081 10 1 1.8261 -0.4206 5.2203 11 1 1.8260 -2.5203 4.0076 12 7 2.0184 -0.6906 -1.1962 13 16 2.4122 0.1773 -2.5505 14 8 1.2751 0.9967 -2.7846 15 8 2.8122 -0.8074 -3.4937 16 6 3.8312 1.1873 -2.0441 17 6 4.2933 2.0455 -3.2236 18 1 4.5036 1.4012 -4.0772 19 6 5.5609 2.8007 -2.8346 20 6 6.1867 3.4665 -4.0566 21 6 5.3074 4.6271 -4.5276 22 16 3.7007 3.9714 -5.0654 23 8 2.8042 5.0585 -5.2487 24 8 3.9162 3.0601 -6.1342 25 6 3.1875 3.0361 -3.5949 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.7082 1.1607 3.4844 30 1 2.1110 -1.6561 -1.1950 31 1 4.6458 0.5363 -1.7268 32 1 3.5399 1.8344 -1.2167 33 1 5.3123 3.5640 -2.0974 34 1 6.2761 2.1021 -2.4003 35 1 7.1753 3.8443 -3.7961 36 1 6.2805 2.7348 -4.8591 37 1 5.1587 5.3286 -3.7067 38 1 5.7918 5.1372 -5.3602 39 1 2.2680 2.4921 -3.8113 40 1 3.0198 3.7234 -2.7657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363964536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:10 Heat of formation + Delta-G solvation = -156.576520 kcal Electronic energy + Delta-G solvation = -24844.013587 eV Core-core repulsion = 21105.922730 eV Total energy + Delta-G solvation = -3738.090857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -38.25722 -37.02066 -36.70814 -36.18027 -35.60707 -35.44421 -33.30706 -32.29147 -28.48922 -28.20670 -27.58902 -25.29620 -23.06071 -21.04035 -21.00536 -19.07788 -18.82058 -17.62203 -17.00708 -16.72641 -16.44624 -15.96636 -15.84942 -15.60304 -15.30703 -14.77424 -14.40719 -13.95041 -13.77450 -13.33409 -13.30454 -12.96008 -12.67631 -12.34490 -12.28409 -12.17282 -12.09452 -11.83430 -11.76982 -11.71024 -11.58660 -11.49016 -11.25999 -11.18116 -11.04621 -10.87041 -10.65954 -10.61852 -10.35616 -10.23984 -10.06582 -9.25561 -8.70997 -8.36577 -6.23245 -4.32732 -0.19086 0.70502 2.45347 3.17974 3.24026 3.24463 3.32589 3.45124 3.64348 3.99169 4.12664 4.24672 4.27728 4.32421 4.39032 4.48829 4.63974 4.80085 4.95824 5.07665 5.08887 5.20389 5.22195 5.42693 5.47342 5.55762 5.72895 5.74084 5.88889 6.21277 6.75358 7.00823 7.04153 7.49346 7.63446 7.72423 7.95366 8.18563 8.71283 9.34706 10.81962 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.003751 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.252210 B = 7463.012675 C = 7808.649670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.273 3.727 3 H 0.038 0.962 4 C -0.531 4.531 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.102 6.102 13 S 2.602 3.398 14 O -0.958 6.958 15 O -0.977 6.977 16 C -0.627 4.627 17 C -0.061 4.061 18 H 0.102 0.898 19 C -0.130 4.130 20 C -0.112 4.112 21 C -0.606 4.606 22 S 2.420 3.580 23 O -0.939 6.939 24 O -0.934 6.934 25 C -0.640 4.640 26 H 0.090 0.910 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.409 0.591 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.155 0.845 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 6.446 -9.195 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.169 3.831 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.862 5.862 13 S 2.693 3.307 14 O -0.948 6.948 15 O -0.967 6.967 16 C -0.755 4.755 17 C -0.082 4.082 18 H 0.121 0.879 19 C -0.168 4.168 20 C -0.150 4.150 21 C -0.735 4.735 22 S 2.602 3.398 23 O -0.936 6.936 24 O -0.931 6.931 25 C -0.768 4.768 26 H 0.109 0.891 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.243 0.757 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.013 6.870 -10.696 16.182 hybrid contribution 1.124 -0.626 2.381 2.707 sum 11.138 6.244 -8.314 15.237 Atomic orbital electron populations 1.22227 0.98005 1.00028 1.01538 1.18532 0.91744 0.91793 0.80999 0.94404 1.21278 1.32325 1.13403 0.90038 0.91761 1.24930 0.94758 0.94984 0.99122 1.69865 1.35747 1.22562 1.24172 0.86523 0.79080 0.79814 0.81781 1.20210 1.21144 1.20094 1.55575 1.80915 1.18531 1.31216 1.05017 0.76488 0.75166 0.74003 1.93550 1.45827 1.71029 1.84393 1.93555 1.84743 1.57476 1.60904 1.30722 1.22291 1.14603 1.07930 1.20569 0.93798 0.95778 0.98051 0.87949 1.21761 0.96087 1.00741 0.98200 1.21317 0.99676 0.95219 0.98812 1.30271 1.21167 1.09492 1.12588 1.08000 0.77875 0.76474 0.77475 1.93600 1.61823 1.53186 1.85000 1.93598 1.85590 1.64285 1.49671 1.30852 1.09631 1.14004 1.22308 0.89108 0.95334 0.94938 0.92411 0.75709 0.84147 0.83878 0.89873 0.88942 0.89168 0.89461 0.84665 0.84787 0.82778 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.29 37.16 0.35 -3.38 16 2 C 0.27 6.19 2.66 -69.08 -0.18 6.00 16 3 H 0.04 0.87 7.15 -51.93 -0.37 0.50 16 4 C -0.53 -12.99 8.76 -34.44 -0.30 -13.29 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.07 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.14 11.32 55.43 0.63 -22.51 16 8 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 9 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 10 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 N -1.10 -20.94 5.35 -5.88 -0.03 -20.97 16 13 S 2.60 44.55 5.03 -107.50 -0.54 44.01 16 14 O -0.96 -18.78 14.76 -57.54 -0.85 -19.63 16 15 O -0.98 -18.46 18.08 -57.54 -1.04 -19.50 16 16 C -0.63 -7.89 5.38 37.16 0.20 -7.69 16 17 C -0.06 -0.66 2.02 -90.81 -0.18 -0.84 16 18 H 0.10 1.04 8.02 -51.93 -0.42 0.62 16 19 C -0.13 -0.96 4.93 -27.15 -0.13 -1.10 16 20 C -0.11 -0.70 5.73 -26.92 -0.15 -0.86 16 21 C -0.61 -3.89 6.35 37.18 0.24 -3.65 16 22 S 2.42 25.82 5.30 -107.50 -0.57 25.25 16 23 O -0.94 -13.20 18.10 -57.82 -1.05 -14.25 16 24 O -0.93 -12.89 17.96 -57.82 -1.04 -13.93 16 25 C -0.64 -7.16 5.40 37.18 0.20 -6.96 16 26 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 27 H 0.03 0.64 7.42 -51.93 -0.39 0.25 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 30 H 0.41 7.26 8.79 -34.47 -0.30 6.96 16 31 H 0.14 1.47 8.10 -51.92 -0.42 1.05 16 32 H 0.14 1.75 7.44 -51.92 -0.39 1.36 16 33 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 37 H 0.14 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.15 2.04 5.36 -51.93 -0.28 1.76 16 40 H 0.15 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -34.86 341.94 -10.22 -45.07 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.79 Total: 7.01 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -0.07 Total: -30.21 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.60 Total: -43.48 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: -3.97 Total: -67.31 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 70.37 SS G_CDS: -1.11 Total: 69.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.86 -10.22 -45.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363964536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.502 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds