Wall clock time and date at job start Tue Mar 31 2020 14:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.36895 * 2 1 4 4 C 1.54368 * 110.32250 * 122.17758 * 2 1 3 5 5 C 1.54478 * 103.04389 * 136.71664 * 4 2 1 6 6 H 1.09000 * 110.40417 * 241.47268 * 5 4 2 7 7 N 1.46496 * 110.40446 * 119.16286 * 5 4 2 8 8 S 1.65598 * 119.99982 * 144.99803 * 7 5 4 9 9 O 1.42102 * 106.40410 * 311.46105 * 8 7 5 10 10 O 1.42108 * 106.40228 * 178.53929 * 8 7 5 11 11 C 1.76199 * 107.21530 * 65.00200 * 8 7 5 12 12 C 1.38639 * 119.75058 * 90.00076 * 11 8 7 13 13 C 1.37620 * 120.24600 * 180.02562 * 12 11 8 14 14 C 1.40709 * 119.74659 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.24338 * 179.72708 * 14 13 12 16 16 H 1.08005 * 120.00215 * 335.77065 * 15 14 13 17 17 C 1.39945 * 120.00241 * 155.78109 * 15 14 13 18 18 N 1.30830 * 119.99741 * 341.78948 * 17 15 14 19 19 Si 1.86803 * 120.00422 * 161.79614 * 17 15 14 20 20 H 1.48494 * 109.47184 * 89.99645 * 19 17 15 21 21 H 1.48503 * 109.46984 * 209.99937 * 19 17 15 22 22 H 1.48503 * 109.46937 * 329.99484 * 19 17 15 23 23 C 1.40722 * 119.51499 * 0.02562 * 14 13 12 24 24 C 1.37613 * 119.73879 * 359.97438 * 23 14 13 25 25 C 1.51503 * 104.62801 * 0.37557 * 5 4 2 26 26 O 1.20823 * 125.94541 * 159.59676 * 25 5 4 27 27 O 1.34569 * 108.11377 * 339.61683 * 25 5 4 28 28 H 1.09002 * 109.47221 * 297.82175 * 1 2 3 29 29 H 1.09004 * 109.47115 * 57.81844 * 1 2 3 30 30 H 1.09000 * 109.47263 * 177.82074 * 1 2 3 31 31 H 1.08993 * 110.69993 * 18.33172 * 4 2 1 32 32 H 1.08997 * 110.70275 * 255.10239 * 4 2 1 33 33 H 0.96999 * 119.99915 * 324.99958 * 7 5 4 34 34 H 1.07996 * 119.87754 * 359.97438 * 12 11 8 35 35 H 1.08005 * 120.12353 * 180.02562 * 13 12 11 36 36 H 0.97006 * 119.99913 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.12822 * 179.97438 * 23 14 13 38 38 H 1.08004 * 119.87304 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0661 -0.7709 1.2252 5 6 3.2145 -1.6157 0.6305 6 1 3.0099 -2.6787 0.7581 7 7 4.4884 -1.2624 1.2618 8 16 5.6348 -2.4286 1.5224 9 8 4.9644 -3.5200 2.1378 10 8 6.7500 -1.7712 2.1086 11 6 6.1674 -2.9987 -0.0574 12 6 7.2352 -2.3791 -0.6883 13 6 7.6594 -2.8156 -1.9226 14 6 7.0052 -3.8954 -2.5439 15 6 7.4285 -4.3488 -3.8145 16 1 7.9546 -3.6794 -4.4791 17 6 7.1656 -5.6649 -4.2112 18 7 6.8623 -6.5696 -3.3161 19 14 7.2480 -6.1299 -6.0185 20 1 8.6267 -6.5671 -6.3548 21 1 6.2975 -7.2385 -6.2882 22 1 6.8851 -4.9537 -6.8493 23 6 5.9225 -4.5167 -1.8942 24 6 5.5155 -4.0633 -0.6603 25 6 3.2350 -1.2521 -0.8401 26 8 4.1654 -1.4049 -1.5956 27 8 2.0368 -0.7288 -1.1585 28 1 -0.3634 0.4796 0.9089 29 1 -0.3633 0.5474 -0.8698 30 1 -0.3634 -1.0269 -0.0391 31 1 1.2923 -1.4137 1.6448 32 1 2.4457 -0.0809 1.9788 33 1 4.6603 -0.3454 1.5272 34 1 7.7355 -1.5502 -0.2097 35 1 8.4917 -2.3318 -2.4121 36 1 6.6805 -7.4819 -3.5910 37 1 5.4130 -5.3460 -2.3623 38 1 4.6845 -4.5383 -0.1599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413356308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:06 Heat of formation + Delta-G solvation = -136.721502 kcal Electronic energy + Delta-G solvation = -25948.110140 eV Core-core repulsion = 22075.436309 eV Total energy + Delta-G solvation = -3872.673830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00005 -37.51930 -37.33525 -36.58622 -35.33448 -35.18347 -33.93450 -32.49205 -30.15680 -29.35521 -29.19180 -25.73438 -24.90856 -22.01077 -21.41265 -21.22785 -20.97493 -19.26587 -17.55989 -17.52898 -17.34687 -16.67193 -16.43265 -15.81834 -15.43916 -15.30713 -14.74365 -14.43720 -14.04722 -13.64629 -13.32659 -13.16356 -13.03306 -12.84406 -12.44839 -12.36027 -12.11399 -11.89935 -11.73899 -11.61571 -11.51093 -11.40849 -11.26678 -11.18441 -11.14597 -10.96488 -10.77524 -10.60494 -10.37901 -9.66110 -9.54667 -9.37659 -9.08345 -7.82312 -7.55662 -7.04824 -4.68434 1.11868 2.08019 2.36945 2.93228 2.95039 3.02509 3.07404 3.26701 3.55044 3.74149 3.90318 4.10699 4.29808 4.32499 4.50148 4.55631 4.82510 5.00508 5.04296 5.23332 5.32660 5.46596 5.52942 5.57636 5.75985 5.83013 6.14277 6.19649 6.68219 6.76884 6.79333 6.94054 7.09515 7.17858 7.45651 7.55744 7.65546 7.73196 7.88593 8.08479 8.42901 8.63072 8.78155 9.86941 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004453 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.615704 B = 6286.296790 C = 7506.938724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 H 0.092 0.908 4 C -0.156 4.156 5 C 0.098 3.902 6 H 0.135 0.865 7 N -1.108 6.108 8 S 2.685 3.315 9 O -0.981 6.981 10 O -0.980 6.980 11 C -0.771 4.771 12 C 0.011 3.989 13 C -0.235 4.235 14 C 0.147 3.853 15 C -0.438 4.438 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.768 5.768 19 Si 0.915 3.085 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.176 4.176 24 C -0.013 4.013 25 C 0.454 3.546 26 O -0.389 6.389 27 O -0.352 6.352 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.413 0.587 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.288 0.712 37 H 0.119 0.881 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 9.745 5.733 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.110 0.890 4 C -0.195 4.195 5 C -0.012 4.012 6 H 0.153 0.847 7 N -0.863 5.863 8 S 2.785 3.215 9 O -0.971 6.971 10 O -0.971 6.971 11 C -0.869 4.869 12 C -0.009 4.009 13 C -0.256 4.256 14 C 0.143 3.857 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.148 4.148 18 N -0.390 5.390 19 Si 0.738 3.262 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.196 4.196 24 C -0.033 4.033 25 C 0.287 3.713 26 O -0.264 6.264 27 O -0.271 6.271 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.246 0.754 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.137 0.863 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.581 8.943 6.023 15.823 hybrid contribution 0.151 0.038 -1.353 1.362 sum -11.430 8.981 4.670 15.268 Atomic orbital electron populations 1.21916 0.91824 1.03861 1.03207 1.23584 0.96346 0.95390 0.82370 0.88994 1.23244 0.98107 1.00060 0.98098 1.21963 0.85274 1.03238 0.90768 0.84712 1.55860 1.28216 1.25533 1.76666 1.01493 0.72089 0.72456 0.75413 1.93492 1.75343 1.52480 1.75807 1.93503 1.50291 1.75722 1.77542 1.28823 1.16345 1.16168 1.25562 1.20029 0.92205 0.94837 0.93875 1.20957 1.03584 1.04268 0.96746 1.17793 0.88009 0.88753 0.91151 1.19915 1.30197 0.96160 1.00244 0.89580 1.26118 0.92078 0.96246 1.00393 1.69835 1.29902 1.03420 1.35880 0.86192 0.79243 0.79280 0.81489 1.19088 1.19702 1.18060 1.21237 0.99298 1.03261 0.95816 1.20106 0.95942 0.92635 0.94650 1.23791 0.80947 0.76034 0.90525 1.90919 1.31380 1.46679 1.57441 1.87360 1.33814 1.65983 1.39933 0.90146 0.91211 0.91030 0.87874 0.88032 0.75363 0.88192 0.88452 0.90099 0.86304 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.49 37.16 0.35 -0.54 16 2 C 0.08 0.65 4.13 -26.02 -0.11 0.54 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.16 -1.22 6.51 -25.24 -0.16 -1.39 16 5 C 0.10 1.26 3.70 -67.91 -0.25 1.01 16 6 H 0.14 1.75 7.56 -51.93 -0.39 1.36 16 7 N -1.11 -15.42 5.48 -4.88 -0.03 -15.45 16 8 S 2.69 51.02 5.71 -107.50 -0.61 50.41 16 9 O -0.98 -20.32 16.64 -57.17 -0.95 -21.27 16 10 O -0.98 -20.47 17.26 -57.17 -0.99 -21.45 16 11 C -0.77 -17.44 4.85 -39.29 -0.19 -17.63 16 12 C 0.01 0.25 9.49 -39.66 -0.38 -0.12 16 13 C -0.23 -5.87 9.80 -38.87 -0.38 -6.25 16 14 C 0.15 3.90 5.57 -106.82 -0.60 3.31 16 15 C -0.44 -11.29 9.05 -37.74 -0.34 -11.63 16 16 H 0.09 2.11 7.91 -52.48 -0.42 1.69 16 17 C 0.07 1.77 5.13 -17.34 -0.09 1.68 16 18 N -0.77 -19.08 10.98 55.55 0.61 -18.47 16 19 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 C -0.18 -4.58 8.71 -38.87 -0.34 -4.92 16 24 C -0.01 -0.31 9.13 -39.66 -0.36 -0.67 16 25 C 0.45 7.17 8.15 36.40 0.30 7.46 16 26 O -0.39 -7.99 16.47 -18.32 -0.30 -8.29 16 27 O -0.35 -4.73 10.87 -39.75 -0.43 -5.16 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.63 7.82 -51.93 -0.41 0.22 16 32 H 0.10 0.59 7.83 -51.93 -0.41 0.18 16 33 H 0.41 4.47 8.71 -34.47 -0.30 4.17 16 34 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 35 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 36 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 37 H 0.12 3.14 6.17 -52.49 -0.32 2.82 16 38 H 0.10 2.10 7.60 -52.48 -0.40 1.70 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -33.65 338.13 -9.48 -43.13 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.29 Total: 7.83 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -2.55 Total: -29.15 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.58 Total: -33.92 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -2.67 Total: -56.18 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.61 Total: 50.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.65 -9.48 -43.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413356308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.593 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds