Wall clock time and date at job start Tue Mar 31 2020 14:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.36895 * 2 1 4 4 C 1.54368 * 110.32250 * 122.17758 * 2 1 3 5 5 C 1.54478 * 103.04389 * 136.71664 * 4 2 1 6 6 H 1.09000 * 110.40417 * 241.47268 * 5 4 2 7 7 N 1.46496 * 110.40446 * 119.16286 * 5 4 2 8 8 S 1.65598 * 119.99982 * 144.99803 * 7 5 4 9 9 O 1.42102 * 106.40410 * 311.46105 * 8 7 5 10 10 O 1.42108 * 106.40228 * 178.53929 * 8 7 5 11 11 C 1.76199 * 107.21530 * 65.00200 * 8 7 5 12 12 C 1.38639 * 119.75058 * 90.00076 * 11 8 7 13 13 C 1.37620 * 120.24600 * 180.02562 * 12 11 8 14 14 C 1.40709 * 119.74659 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.24338 * 179.72708 * 14 13 12 16 16 H 1.08005 * 120.00215 * 335.77065 * 15 14 13 17 17 C 1.39945 * 120.00241 * 155.78109 * 15 14 13 18 18 N 1.30830 * 119.99741 * 341.78948 * 17 15 14 19 19 Si 1.86803 * 120.00422 * 161.79614 * 17 15 14 20 20 H 1.48494 * 109.47184 * 89.99645 * 19 17 15 21 21 H 1.48503 * 109.46984 * 209.99937 * 19 17 15 22 22 H 1.48503 * 109.46937 * 329.99484 * 19 17 15 23 23 C 1.40722 * 119.51499 * 0.02562 * 14 13 12 24 24 C 1.37613 * 119.73879 * 359.97438 * 23 14 13 25 25 C 1.51503 * 104.62801 * 0.37557 * 5 4 2 26 26 O 1.20823 * 125.94541 * 159.59676 * 25 5 4 27 27 O 1.34569 * 108.11377 * 339.61683 * 25 5 4 28 28 H 1.09002 * 109.47221 * 297.82175 * 1 2 3 29 29 H 1.09004 * 109.47115 * 57.81844 * 1 2 3 30 30 H 1.09000 * 109.47263 * 177.82074 * 1 2 3 31 31 H 1.08993 * 110.69993 * 18.33172 * 4 2 1 32 32 H 1.08997 * 110.70275 * 255.10239 * 4 2 1 33 33 H 0.96999 * 119.99915 * 324.99958 * 7 5 4 34 34 H 1.07996 * 119.87754 * 359.97438 * 12 11 8 35 35 H 1.08005 * 120.12353 * 180.02562 * 13 12 11 36 36 H 0.97006 * 119.99913 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.12822 * 179.97438 * 23 14 13 38 38 H 1.08004 * 119.87304 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0661 -0.7709 1.2252 5 6 3.2145 -1.6157 0.6305 6 1 3.0099 -2.6787 0.7581 7 7 4.4884 -1.2624 1.2618 8 16 5.6348 -2.4286 1.5224 9 8 4.9644 -3.5200 2.1378 10 8 6.7500 -1.7712 2.1086 11 6 6.1674 -2.9987 -0.0574 12 6 7.2352 -2.3791 -0.6883 13 6 7.6594 -2.8156 -1.9226 14 6 7.0052 -3.8954 -2.5439 15 6 7.4285 -4.3488 -3.8145 16 1 7.9546 -3.6794 -4.4791 17 6 7.1656 -5.6649 -4.2112 18 7 6.8623 -6.5696 -3.3161 19 14 7.2480 -6.1299 -6.0185 20 1 8.6267 -6.5671 -6.3548 21 1 6.2975 -7.2385 -6.2882 22 1 6.8851 -4.9537 -6.8493 23 6 5.9225 -4.5167 -1.8942 24 6 5.5155 -4.0633 -0.6603 25 6 3.2350 -1.2521 -0.8401 26 8 4.1654 -1.4049 -1.5956 27 8 2.0368 -0.7288 -1.1585 28 1 -0.3634 0.4796 0.9089 29 1 -0.3633 0.5474 -0.8698 30 1 -0.3634 -1.0269 -0.0391 31 1 1.2923 -1.4137 1.6448 32 1 2.4457 -0.0809 1.9788 33 1 4.6603 -0.3454 1.5272 34 1 7.7355 -1.5502 -0.2097 35 1 8.4917 -2.3318 -2.4121 36 1 6.6805 -7.4819 -3.5910 37 1 5.4130 -5.3460 -2.3623 38 1 4.6845 -4.5383 -0.1599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413356308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:05 Heat of formation + Delta-G solvation = -160.918782 kcal Electronic energy + Delta-G solvation = -25949.159413 eV Core-core repulsion = 22075.436309 eV Total energy + Delta-G solvation = -3873.723103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02974 -39.33555 -38.62080 -38.21899 -36.86494 -36.43708 -35.77505 -33.25252 -32.04159 -31.25707 -30.09931 -27.60822 -25.73797 -23.30756 -22.96527 -22.75778 -22.18350 -20.70419 -19.41683 -18.88224 -18.62348 -18.14140 -17.74061 -17.20095 -16.90144 -16.56989 -15.96213 -15.77023 -15.60437 -15.16666 -14.95482 -14.55561 -14.13608 -13.97087 -13.93522 -13.57240 -13.51314 -13.18611 -13.09057 -13.02505 -12.95023 -12.88081 -12.86355 -12.62695 -12.55244 -12.29781 -12.04448 -11.98678 -11.52779 -11.39550 -11.30499 -11.16741 -10.37749 -9.71704 -9.47979 -8.85811 -6.62184 -0.41738 0.54591 0.90589 1.12089 1.32602 1.40033 1.49735 2.08207 2.12359 2.33616 2.52519 2.82276 2.99481 3.27126 3.49480 3.59449 3.68045 3.91665 4.09348 4.26781 4.30325 4.31057 4.38536 4.84821 4.85735 4.89644 4.95195 4.97074 5.07800 5.10933 5.29302 5.33681 5.55484 5.64403 5.74892 5.77733 5.95153 6.01509 6.19491 6.47651 6.51896 6.71435 6.86130 8.10068 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004453 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.615704 B = 6286.296790 C = 7506.938724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.111 0.889 4 C -0.141 4.141 5 C 0.091 3.909 6 H 0.134 0.866 7 N -1.088 6.088 8 S 2.724 3.276 9 O -0.993 6.993 10 O -0.994 6.994 11 C -0.782 4.782 12 C 0.005 3.995 13 C -0.259 4.259 14 C 0.117 3.883 15 C -0.476 4.476 16 H 0.086 0.914 17 C 0.035 3.965 18 N -0.801 5.801 19 Si 0.990 3.010 20 H -0.256 1.256 21 H -0.261 1.261 22 H -0.258 1.258 23 C -0.203 4.203 24 C -0.014 4.014 25 C 0.454 3.546 26 O -0.452 6.452 27 O -0.370 6.370 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.432 0.568 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.297 0.703 37 H 0.105 0.895 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 11.048 7.264 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.129 0.871 4 C -0.180 4.180 5 C -0.019 4.019 6 H 0.152 0.848 7 N -0.849 5.849 8 S 2.819 3.181 9 O -0.983 6.983 10 O -0.985 6.985 11 C -0.874 4.874 12 C -0.015 4.015 13 C -0.279 4.279 14 C 0.114 3.886 15 C -0.504 4.504 16 H 0.104 0.896 17 C -0.184 4.184 18 N -0.424 5.424 19 Si 0.809 3.191 20 H -0.180 1.180 21 H -0.185 1.185 22 H -0.182 1.182 23 C -0.223 4.223 24 C -0.034 4.034 25 C 0.290 3.710 26 O -0.332 6.332 27 O -0.289 6.289 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.269 0.731 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.491 10.255 7.550 18.552 hybrid contribution 0.582 -0.217 -1.641 1.755 sum -12.909 10.038 5.909 17.387 Atomic orbital electron populations 1.21979 0.89806 1.04063 1.04688 1.24098 0.97922 0.95730 0.80743 0.87125 1.23380 0.96350 1.00080 0.98186 1.22246 0.86112 1.04402 0.89144 0.84832 1.55282 1.27619 1.25736 1.76241 1.00422 0.71956 0.72421 0.73251 1.93480 1.75541 1.53982 1.75256 1.93481 1.51932 1.75907 1.77158 1.29515 1.15622 1.15369 1.26939 1.20328 0.92428 0.95230 0.93469 1.21190 1.04229 1.04635 0.97861 1.18137 0.88688 0.89709 0.92062 1.20174 1.32067 0.97478 1.00634 0.89577 1.26997 0.90991 0.95403 1.04963 1.69868 1.30396 1.04105 1.38068 0.85081 0.79801 0.78948 0.75237 1.17990 1.18463 1.18200 1.21244 1.00017 1.03815 0.97233 1.20316 0.96172 0.92821 0.94061 1.24310 0.80715 0.74715 0.91258 1.90894 1.33837 1.49237 1.59248 1.87340 1.32612 1.66020 1.42891 0.86942 0.91587 0.91344 0.85229 0.84918 0.73063 0.86105 0.87806 0.89155 0.87690 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.49 71.98 0.68 -0.52 16 2 C 0.07 0.91 4.13 31.06 0.13 1.04 16 3 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -1.58 6.51 31.56 0.21 -1.38 16 5 C 0.09 2.11 3.70 45.00 0.17 2.28 16 6 H 0.13 3.21 7.56 -2.39 -0.02 3.19 16 7 N -1.09 -27.43 5.48 -169.34 -0.93 -28.36 16 8 S 2.72 99.04 5.71 -56.49 -0.32 98.72 16 9 O -0.99 -39.20 16.64 -128.00 -2.13 -41.33 16 10 O -0.99 -39.55 17.26 -128.00 -2.21 -41.76 16 11 C -0.78 -35.60 4.85 22.46 0.11 -35.49 16 12 C 0.01 0.25 9.49 22.22 0.21 0.46 16 13 C -0.26 -13.53 9.80 22.73 0.22 -13.30 16 14 C 0.12 6.60 5.57 -21.29 -0.12 6.48 16 15 C -0.48 -25.88 9.05 23.46 0.21 -25.67 16 16 H 0.09 4.46 7.91 -2.91 -0.02 4.44 16 17 C 0.04 1.75 5.13 85.26 0.44 2.19 16 18 N -0.80 -41.33 10.98 21.83 0.24 -41.09 16 19 Si 0.99 37.25 29.60 68.60 2.03 39.28 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 21 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 C -0.20 -11.15 8.71 22.73 0.20 -10.95 16 24 C -0.01 -0.67 9.13 22.22 0.20 -0.47 16 25 C 0.45 14.12 8.15 71.49 0.58 14.70 16 26 O -0.45 -19.17 16.47 21.56 0.36 -18.82 16 27 O -0.37 -9.51 10.87 -55.14 -0.60 -10.11 16 28 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.13 0.87 7.82 -2.39 -0.02 0.85 16 32 H 0.13 0.74 7.83 -2.39 -0.02 0.72 16 33 H 0.43 7.82 8.71 -96.75 -0.84 6.98 16 34 H 0.12 5.11 7.60 -2.91 -0.02 5.09 16 35 H 0.10 5.07 8.06 -2.91 -0.02 5.04 16 36 H 0.30 13.61 8.30 -92.70 -0.77 12.84 16 37 H 0.11 5.91 6.17 -2.91 -0.02 5.90 16 38 H 0.11 4.97 7.60 -2.91 -0.02 4.94 16 Total: -1.00 -77.45 338.13 -0.06 -77.51 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.27 Total: 26.59 kcal Atomic # 6 Polarization: -63.87 SS G_CDS: 3.24 Total: -60.63 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -0.69 Total: -69.45 kcal Atomic # 8 Polarization: -107.43 SS G_CDS: -4.58 Total: -112.02 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 16 Polarization: 99.04 SS G_CDS: -0.32 Total: 98.72 kcal Total: -77.45 -0.06 -77.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413356308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.412 kcal (2) G-P(sol) polarization free energy of solvation -77.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds