Wall clock time and date at job start Tue Mar 31 2020 14:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46747 * 2 1 4 4 C 1.52996 * 109.47127 * 120.00239 * 2 1 3 5 5 N 1.46495 * 109.47286 * 304.99972 * 4 2 1 6 6 C 1.34779 * 120.00617 * 180.02562 * 5 4 2 7 7 O 1.21554 * 119.99514 * 359.97438 * 6 5 4 8 8 C 1.47864 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.39674 * 120.09826 * 359.72465 * 8 6 5 10 10 C 1.38041 * 120.03187 * 179.74462 * 9 8 6 11 11 C 1.38170 * 120.24727 * 0.55434 * 10 9 8 12 12 C 1.39179 * 120.20121 * 359.70052 * 11 10 9 13 13 S 1.76205 * 120.02286 * 180.02562 * 12 11 10 14 14 C 1.76201 * 100.00022 * 265.52750 * 13 12 11 15 15 H 1.07999 * 119.99867 * 5.11481 * 14 13 12 16 16 C 1.38724 * 120.00233 * 185.11599 * 14 13 12 17 17 N 1.31625 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00180 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46749 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46889 * 120.00296 * 18 16 14 21 21 H 1.48503 * 109.47040 * 240.00148 * 18 16 14 22 22 C 1.38873 * 119.96203 * 0.02562 * 12 11 10 23 23 C 1.50700 * 109.47183 * 240.00147 * 2 1 3 24 24 O 1.20822 * 120.00080 * 265.00213 * 23 2 1 25 25 O 1.34232 * 120.00166 * 84.99562 * 23 2 1 26 26 H 1.08998 * 109.47309 * 60.00315 * 1 2 3 27 27 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46916 * 299.99594 * 1 2 3 29 29 H 0.96700 * 113.99643 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47739 * 65.00288 * 4 2 1 31 31 H 1.09002 * 109.46910 * 185.00161 * 4 2 1 32 32 H 0.97003 * 120.00096 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.98232 * 0.02562 * 9 8 6 34 34 H 1.08002 * 119.87511 * 180.25168 * 10 9 8 35 35 H 1.08002 * 119.89784 * 179.72030 * 11 10 9 36 36 H 0.97007 * 119.99920 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.12538 * 180.02562 * 22 12 11 38 38 H 0.96697 * 117.00482 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4559 -0.1038 2.4423 6 6 1.7648 -0.5769 3.6660 7 8 2.5277 -1.5164 3.7795 8 6 1.1757 0.0468 4.8702 9 6 0.3033 1.1300 4.7425 10 6 -0.2501 1.7079 5.8674 11 6 0.0644 1.2261 7.1236 12 6 0.9366 0.1505 7.2629 13 16 1.3339 -0.4605 8.8671 14 6 2.8197 0.4348 9.1763 15 1 3.1559 1.1823 8.4731 16 6 3.5575 0.1794 10.3230 17 7 3.1479 -0.7320 11.1798 18 14 5.1331 1.1281 10.6504 19 1 5.3727 2.0871 9.5422 20 1 5.0067 1.8709 11.9300 21 1 6.2725 0.1798 10.7389 22 6 1.4938 -0.4409 6.1366 23 6 2.0324 -0.7104 -1.2305 24 8 2.3197 -1.8827 -1.1763 25 8 2.1605 -0.0408 -2.3868 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.9703 1.4237 -0.0004 30 1 1.7518 -1.7715 1.2056 31 1 3.1264 -0.6443 1.2951 32 1 0.8468 0.6457 2.3518 33 1 0.0580 1.5129 3.7628 34 1 -0.9275 2.5428 5.7655 35 1 -0.3683 1.6853 8.0002 36 1 3.6637 -0.9103 11.9818 37 1 2.1706 -1.2759 6.2416 38 1 2.4862 -0.5389 -3.1489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571050542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:59 Heat of formation + Delta-G solvation = -151.217026 kcal Electronic energy + Delta-G solvation = -24186.390517 eV Core-core repulsion = 20313.088113 eV Total energy + Delta-G solvation = -3873.302404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28791 -39.99191 -38.30420 -37.58498 -36.75245 -34.69745 -32.51269 -32.09040 -30.79197 -30.50122 -27.34420 -25.57746 -25.20911 -23.30157 -22.22876 -21.02849 -20.56002 -19.14959 -18.50665 -18.03099 -17.46624 -16.65326 -16.17597 -15.81443 -15.54781 -15.37550 -15.02863 -14.85501 -14.60167 -14.38935 -14.22263 -13.69725 -13.42273 -13.11898 -13.07639 -12.94844 -12.62380 -12.39952 -12.20007 -12.10868 -11.68529 -11.38719 -11.16940 -11.13138 -11.10746 -10.71719 -10.67186 -10.01040 -9.83729 -9.32261 -9.17514 -9.02827 -8.61689 -8.04343 -6.72036 -6.29254 -4.03232 1.12778 1.49645 1.64598 2.12937 2.98996 3.08909 3.19333 3.22433 3.28687 3.41016 3.46933 3.84477 4.06342 4.15456 4.25094 4.52413 4.76643 5.01265 5.05006 5.07309 5.09772 5.18493 5.21472 5.36820 5.46814 5.48083 5.71360 5.85113 5.87414 5.95769 6.14577 6.23250 6.55253 6.61505 6.76953 6.91045 7.16232 7.28890 7.36989 7.57323 8.19320 8.32425 9.16785 10.77538 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002554 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.851517 B =10960.819447 C =11475.527618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.140 3.860 3 O -0.532 6.532 4 C 0.105 3.895 5 N -0.726 5.726 6 C 0.566 3.434 7 O -0.530 6.530 8 C -0.154 4.154 9 C -0.089 4.089 10 C -0.141 4.141 11 C -0.054 4.054 12 C -0.106 4.106 13 S -0.035 6.035 14 C -0.519 4.519 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.870 5.870 18 Si 0.921 3.079 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.018 4.018 23 C 0.458 3.542 24 O -0.498 6.498 25 O -0.503 6.503 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.388 0.612 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.403 0.597 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.269 0.731 37 H 0.139 0.861 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 5.256 -24.564 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.097 3.903 3 O -0.339 6.339 4 C -0.019 4.019 5 N -0.382 5.382 6 C 0.354 3.646 7 O -0.407 6.407 8 C -0.159 4.159 9 C -0.108 4.108 10 C -0.160 4.160 11 C -0.075 4.075 12 C -0.217 4.217 13 S 0.199 5.801 14 C -0.666 4.666 15 H 0.094 0.906 16 C -0.136 4.136 17 N -0.505 5.505 18 Si 0.747 3.253 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.039 4.039 23 C 0.298 3.702 24 O -0.385 6.385 25 O -0.314 6.314 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.237 0.763 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.241 0.759 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.157 0.843 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.027 3.710 -23.239 24.560 hybrid contribution 2.203 1.324 -1.275 2.869 sum -4.824 5.035 -24.514 25.486 Atomic orbital electron populations 1.21850 0.88944 1.04297 1.05002 1.21252 0.97714 0.82985 0.88342 1.86640 1.28022 1.22788 1.96422 1.21735 0.99135 0.98428 0.82652 1.45737 1.50387 1.37236 1.04866 1.18422 0.80630 0.82721 0.82786 1.90799 1.35423 1.27949 1.86507 1.19789 1.03034 0.99958 0.93148 1.21134 0.96250 0.95039 0.98400 1.21061 1.01529 1.00947 0.92491 1.21974 0.94753 0.93497 0.97283 1.22856 0.98959 0.98190 1.01702 1.83625 1.32201 1.58202 1.06044 1.22875 1.09122 1.24316 1.10304 0.90559 1.25008 0.98155 0.95321 0.95138 1.69998 1.38764 1.30788 1.10983 0.86063 0.81445 0.79432 0.78341 1.19494 1.20476 1.20436 1.21956 0.94963 0.97289 0.89733 1.24175 0.74573 0.86010 0.85438 1.90802 1.45109 1.17326 1.85280 1.84589 1.78872 1.47315 1.20636 0.90082 0.89642 0.89620 0.76259 0.88707 0.90317 0.75928 0.86508 0.85783 0.85025 0.92099 0.84276 0.72930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.60 37.16 0.32 -0.54 16 2 C 0.14 1.02 1.02 -91.77 -0.09 0.93 16 3 O -0.53 -3.58 12.72 -49.11 -0.62 -4.20 16 4 C 0.11 1.04 4.45 -4.05 -0.02 1.02 16 5 N -0.73 -7.91 5.14 -61.25 -0.31 -8.22 16 6 C 0.57 8.86 7.77 -12.32 -0.10 8.77 16 7 O -0.53 -10.38 16.34 5.32 0.09 -10.29 16 8 C -0.15 -2.53 5.87 -105.00 -0.62 -3.15 16 9 C -0.09 -1.18 9.54 -39.12 -0.37 -1.55 16 10 C -0.14 -1.95 10.02 -39.68 -0.40 -2.34 16 11 C -0.05 -0.95 9.79 -39.26 -0.38 -1.33 16 12 C -0.11 -2.25 5.45 -39.00 -0.21 -2.46 16 13 S -0.04 -0.91 21.41 -107.50 -2.30 -3.21 16 14 C -0.52 -14.59 9.46 30.91 0.29 -14.30 16 15 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 16 C 0.07 2.04 5.49 -17.46 -0.10 1.94 16 17 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 18 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 23 C 0.46 3.60 7.17 36.01 0.26 3.85 16 24 O -0.50 -5.48 16.74 -18.75 -0.31 -5.80 16 25 O -0.50 -2.78 13.18 -44.43 -0.59 -3.37 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.39 1.59 9.04 45.56 0.41 2.00 16 30 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.40 3.42 5.02 -40.82 -0.20 3.21 16 33 H 0.12 1.06 6.40 -52.49 -0.34 0.73 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.14 3.04 7.65 -52.49 -0.40 2.64 16 38 H 0.41 0.61 9.10 45.56 0.41 1.03 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -36.13 351.71 -7.34 -43.47 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.51 Total: 4.47 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.78 Total: -9.88 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.42 Total: -32.91 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -1.44 Total: -23.66 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.13 -7.34 -43.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571050542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.745 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds