Wall clock time and date at job start Tue Mar 31 2020 14:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46747 * 2 1 4 4 C 1.52996 * 109.47127 * 120.00239 * 2 1 3 5 5 N 1.46495 * 109.47286 * 304.99972 * 4 2 1 6 6 C 1.34779 * 120.00617 * 180.02562 * 5 4 2 7 7 O 1.21554 * 119.99514 * 359.97438 * 6 5 4 8 8 C 1.47864 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.39674 * 120.09826 * 359.72465 * 8 6 5 10 10 C 1.38041 * 120.03187 * 179.74462 * 9 8 6 11 11 C 1.38170 * 120.24727 * 0.55434 * 10 9 8 12 12 C 1.39179 * 120.20121 * 359.70052 * 11 10 9 13 13 S 1.76205 * 120.02286 * 180.02562 * 12 11 10 14 14 C 1.76201 * 100.00022 * 265.52750 * 13 12 11 15 15 H 1.07999 * 119.99867 * 5.11481 * 14 13 12 16 16 C 1.38724 * 120.00233 * 185.11599 * 14 13 12 17 17 N 1.31625 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00180 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46749 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46889 * 120.00296 * 18 16 14 21 21 H 1.48503 * 109.47040 * 240.00148 * 18 16 14 22 22 C 1.38873 * 119.96203 * 0.02562 * 12 11 10 23 23 C 1.50700 * 109.47183 * 240.00147 * 2 1 3 24 24 O 1.20822 * 120.00080 * 265.00213 * 23 2 1 25 25 O 1.34232 * 120.00166 * 84.99562 * 23 2 1 26 26 H 1.08998 * 109.47309 * 60.00315 * 1 2 3 27 27 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46916 * 299.99594 * 1 2 3 29 29 H 0.96700 * 113.99643 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47739 * 65.00288 * 4 2 1 31 31 H 1.09002 * 109.46910 * 185.00161 * 4 2 1 32 32 H 0.97003 * 120.00096 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.98232 * 0.02562 * 9 8 6 34 34 H 1.08002 * 119.87511 * 180.25168 * 10 9 8 35 35 H 1.08002 * 119.89784 * 179.72030 * 11 10 9 36 36 H 0.97007 * 119.99920 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.12538 * 180.02562 * 22 12 11 38 38 H 0.96697 * 117.00482 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.4559 -0.1038 2.4423 6 6 1.7648 -0.5769 3.6660 7 8 2.5277 -1.5164 3.7795 8 6 1.1757 0.0468 4.8702 9 6 0.3033 1.1300 4.7425 10 6 -0.2501 1.7079 5.8674 11 6 0.0644 1.2261 7.1236 12 6 0.9366 0.1505 7.2629 13 16 1.3339 -0.4605 8.8671 14 6 2.8197 0.4348 9.1763 15 1 3.1559 1.1823 8.4731 16 6 3.5575 0.1794 10.3230 17 7 3.1479 -0.7320 11.1798 18 14 5.1331 1.1281 10.6504 19 1 5.3727 2.0871 9.5422 20 1 5.0067 1.8709 11.9300 21 1 6.2725 0.1798 10.7389 22 6 1.4938 -0.4409 6.1366 23 6 2.0324 -0.7104 -1.2305 24 8 2.3197 -1.8827 -1.1763 25 8 2.1605 -0.0408 -2.3868 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.9703 1.4237 -0.0004 30 1 1.7518 -1.7715 1.2056 31 1 3.1264 -0.6443 1.2951 32 1 0.8468 0.6457 2.3518 33 1 0.0580 1.5129 3.7628 34 1 -0.9275 2.5428 5.7655 35 1 -0.3683 1.6853 8.0002 36 1 3.6637 -0.9103 11.9818 37 1 2.1706 -1.2759 6.2416 38 1 2.4862 -0.5389 -3.1489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571050542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:59 Heat of formation + Delta-G solvation = -180.186164 kcal Electronic energy + Delta-G solvation = -24187.646713 eV Core-core repulsion = 20313.088113 eV Total energy + Delta-G solvation = -3874.558600 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96555 -41.14222 -39.32992 -38.53524 -37.32745 -35.66750 -34.65388 -32.95399 -31.99243 -31.72310 -28.10979 -27.74139 -25.96499 -24.45724 -23.54474 -21.78319 -21.62390 -20.06892 -19.76163 -19.10892 -18.62314 -17.38353 -17.34898 -16.93752 -16.83276 -16.61988 -16.45125 -16.09241 -15.60821 -15.38052 -15.19577 -15.00178 -14.67566 -14.56982 -13.97880 -13.65184 -13.54298 -13.26908 -13.17424 -13.07394 -12.98450 -12.91405 -12.68902 -12.65099 -12.38880 -12.00108 -11.73556 -11.37239 -11.25412 -11.15323 -10.74932 -10.39893 -9.91522 -9.69484 -8.80493 -8.39469 -6.19366 -0.18997 0.26447 0.89554 1.29589 1.36412 1.45112 1.48378 1.66008 1.77883 2.21290 2.26470 2.79850 2.90638 2.93702 3.17186 3.41896 3.57264 3.63544 3.95309 4.01918 4.07636 4.34919 4.36640 4.46547 4.51915 4.64214 4.69261 4.73087 4.93288 5.04297 5.16051 5.22049 5.33489 5.38839 5.42566 5.51820 5.86991 6.15947 6.33817 6.39453 6.83405 7.01091 7.05167 8.67839 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002554 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.851517 B =10960.819447 C =11475.527618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 O -0.532 6.532 4 C 0.103 3.897 5 N -0.697 5.697 6 C 0.565 3.435 7 O -0.580 6.580 8 C -0.156 4.156 9 C -0.061 4.061 10 C -0.119 4.119 11 C -0.061 4.061 12 C -0.129 4.129 13 S -0.098 6.098 14 C -0.534 4.534 15 H 0.068 0.932 16 C 0.018 3.982 17 N -0.907 5.907 18 Si 0.993 3.007 19 H -0.265 1.265 20 H -0.265 1.265 21 H -0.273 1.273 22 C -0.045 4.045 23 C 0.467 3.533 24 O -0.537 6.537 25 O -0.495 6.495 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.400 0.600 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.419 0.581 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.135 0.865 36 H 0.274 0.726 37 H 0.102 0.898 38 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 8.575 -27.524 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.109 3.891 3 O -0.340 6.340 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.354 3.646 7 O -0.460 6.460 8 C -0.161 4.161 9 C -0.079 4.079 10 C -0.139 4.139 11 C -0.082 4.082 12 C -0.240 4.240 13 S 0.137 5.863 14 C -0.681 4.681 15 H 0.086 0.914 16 C -0.187 4.187 17 N -0.543 5.543 18 Si 0.815 3.185 19 H -0.189 1.189 20 H -0.190 1.190 21 H -0.199 1.199 22 C -0.066 4.066 23 C 0.308 3.692 24 O -0.427 6.427 25 O -0.309 6.309 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.251 0.749 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.260 0.740 33 H 0.192 0.808 34 H 0.195 0.805 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -8.153 7.078 -26.259 28.392 hybrid contribution 2.453 0.348 -0.590 2.547 sum -5.700 7.426 -26.850 28.435 Atomic orbital electron populations 1.21946 0.87548 1.04737 1.06225 1.21044 0.98580 0.82814 0.86695 1.86629 1.29306 1.21857 1.96233 1.21771 0.98891 0.98080 0.83377 1.45439 1.49427 1.36769 1.03628 1.18384 0.80156 0.82196 0.83902 1.90785 1.37768 1.30244 1.87241 1.19872 1.03631 1.00890 0.91732 1.21721 0.92941 0.92255 1.00990 1.21566 1.00738 1.01153 0.90417 1.22092 0.93994 0.92465 0.99688 1.22488 1.02070 1.00911 0.98546 1.83509 1.32015 1.59751 1.11006 1.23090 1.10050 1.24469 1.10484 0.91424 1.26018 1.01674 0.96268 0.94719 1.70120 1.40322 1.32298 1.11576 0.84988 0.76818 0.78082 0.78636 1.18930 1.19015 1.19862 1.21624 0.95927 0.97471 0.91627 1.24205 0.73567 0.85343 0.86104 1.90803 1.46936 1.18995 1.85926 1.84541 1.78380 1.47216 1.20727 0.88905 0.89692 0.88357 0.74914 0.90314 0.90974 0.73988 0.80789 0.80519 0.84683 0.91719 0.88030 0.70773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.60 71.98 0.62 -0.61 16 2 C 0.15 1.80 1.02 -11.54 -0.01 1.79 16 3 O -0.53 -5.15 12.72 -135.71 -1.73 -6.87 16 4 C 0.10 1.89 4.45 86.38 0.38 2.28 16 5 N -0.70 -13.34 5.14 -465.97 -2.40 -15.74 16 6 C 0.56 17.28 7.77 86.79 0.67 17.96 16 7 O -0.58 -23.59 16.34 -3.89 -0.06 -23.65 16 8 C -0.16 -4.93 5.87 -20.11 -0.12 -5.05 16 9 C -0.06 -1.30 9.54 22.57 0.22 -1.09 16 10 C -0.12 -2.73 10.02 22.21 0.22 -2.51 16 11 C -0.06 -2.08 9.79 22.48 0.22 -1.86 16 12 C -0.13 -5.64 5.45 22.65 0.12 -5.52 16 13 S -0.10 -5.34 21.41 -56.49 -1.21 -6.55 16 14 C -0.53 -31.39 9.46 67.94 0.64 -30.75 16 15 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 16 C 0.02 1.05 5.49 84.84 0.47 1.52 16 17 N -0.91 -54.96 13.22 21.63 0.29 -54.67 16 18 Si 0.99 44.79 29.55 68.60 2.03 46.82 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C -0.04 -1.88 9.34 22.70 0.21 -1.66 16 23 C 0.47 6.41 7.17 71.24 0.51 6.92 16 24 O -0.54 -11.42 16.74 21.98 0.37 -11.05 16 25 O -0.50 -4.13 13.18 -46.49 -0.61 -4.74 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.55 6.57 -2.39 -0.02 0.54 16 29 H 0.40 1.95 9.04 -74.06 -0.67 1.28 16 30 H 0.08 1.77 7.69 -2.39 -0.02 1.75 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.42 5.05 5.02 -92.71 -0.46 4.58 16 33 H 0.17 1.80 6.40 -2.91 -0.02 1.78 16 34 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 37 H 0.10 4.93 7.65 -2.91 -0.02 4.90 16 38 H 0.43 0.20 9.10 -74.06 -0.67 -0.48 16 Total: -1.00 -85.73 351.71 0.17 -85.55 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -0.66 Total: 9.50 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.16 Total: -18.59 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -2.11 Total: -70.41 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -2.03 Total: -46.32 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.21 Total: -6.55 kcal Total: -85.73 0.17 -85.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571050542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.634 kcal (2) G-P(sol) polarization free energy of solvation -85.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds