Wall clock time and date at job start Tue Mar 31 2020 13:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00460 * 2 1 4 4 H 1.48497 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46999 * 300.00127 * 3 2 1 6 6 H 1.48497 * 109.46942 * 59.99851 * 3 2 1 7 7 C 1.38730 * 119.99488 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99529 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00023 * 185.12233 * 9 7 2 11 11 C 1.39229 * 120.02175 * 265.53067 * 10 9 7 12 12 C 1.38131 * 120.20486 * 179.97438 * 11 10 9 13 13 C 1.38092 * 120.24495 * 359.70031 * 12 11 10 14 14 C 1.39638 * 120.03144 * 0.55465 * 13 12 11 15 15 C 1.47863 * 120.09481 * 179.74006 * 14 13 12 16 16 O 1.21556 * 119.99526 * 179.72275 * 15 14 13 17 17 N 1.34775 * 120.00364 * 359.72782 * 15 14 13 18 18 C 1.46500 * 119.99926 * 179.97438 * 17 15 14 19 19 H 1.08991 * 109.47259 * 325.00214 * 18 17 15 20 20 C 1.53004 * 109.46831 * 85.00438 * 18 17 15 21 21 O 1.42894 * 109.47475 * 64.99535 * 20 18 17 22 22 C 1.53002 * 109.47048 * 204.99662 * 18 17 15 23 23 C 1.50702 * 109.46910 * 65.00158 * 22 18 17 24 24 O 1.20825 * 119.99828 * 0.02562 * 23 22 18 25 25 O 1.34224 * 119.99945 * 179.72093 * 23 22 18 26 26 C 1.38828 * 120.02341 * 85.51024 * 10 9 7 27 27 H 0.97000 * 119.99616 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.89883 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.88164 * 179.97438 * 12 11 10 30 30 H 1.07994 * 119.98330 * 180.27207 * 13 12 11 31 31 H 0.96995 * 119.99828 * 359.97438 * 17 15 14 32 32 H 1.09003 * 109.46839 * 185.00361 * 20 18 17 33 33 H 1.09000 * 109.46804 * 304.99216 * 20 18 17 34 34 H 0.96699 * 114.00033 * 179.97438 * 21 20 18 35 35 H 1.08998 * 109.47551 * 305.00470 * 22 18 17 36 36 H 1.08996 * 109.46926 * 185.00216 * 22 18 17 37 37 H 0.96705 * 116.99869 * 180.28027 * 25 23 22 38 38 H 1.08003 * 120.11988 * 0.04295 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0098 -1.2015 -0.0005 8 1 3.0898 -1.2015 -0.0001 9 16 1.1287 -2.7274 -0.0005 10 6 2.4725 -3.8566 0.1536 11 6 3.0358 -4.4284 -0.9840 12 6 4.0898 -5.3137 -0.8676 13 6 4.5958 -5.6329 0.3770 14 6 4.0349 -5.0694 1.5250 15 6 4.5719 -5.4147 2.8587 16 8 4.0856 -4.9192 3.8565 17 7 5.6006 -6.2786 2.9681 18 6 6.1329 -6.6202 4.2895 19 1 6.0802 -5.7467 4.9393 20 6 5.3059 -7.7565 4.8943 21 8 5.4682 -8.9363 4.1047 22 6 7.5898 -7.0669 4.1525 23 6 8.4271 -5.9095 3.6724 24 8 7.9115 -4.8373 3.4619 25 8 9.7466 -6.0682 3.4845 26 6 2.9704 -4.1764 1.4094 27 1 -0.4849 0.8401 0.0004 28 1 2.6477 -4.1790 -1.9605 29 1 4.5226 -5.7545 -1.7534 30 1 5.4227 -6.3222 0.4629 31 1 5.9884 -6.6741 2.1719 32 1 5.6448 -7.9507 5.9119 33 1 4.2538 -7.4716 4.9099 34 1 4.9712 -9.6991 4.4306 35 1 7.6533 -7.8840 3.4338 36 1 7.9587 -7.4052 5.1208 37 1 10.2426 -5.2960 3.1797 38 1 2.5352 -3.7347 2.2937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:45 Heat of formation + Delta-G solvation = -186.968015 kcal Electronic energy + Delta-G solvation = -24531.867440 eV Core-core repulsion = 20657.014757 eV Total energy + Delta-G solvation = -3874.852683 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68094 -40.92609 -39.34251 -38.11280 -37.09525 -35.79412 -34.67552 -33.18664 -31.98186 -31.37982 -28.50186 -27.76568 -25.27995 -23.83469 -23.36098 -21.81442 -21.51017 -20.03356 -19.05746 -19.03146 -18.45272 -17.76450 -17.29923 -16.96086 -16.95081 -16.71193 -16.58752 -16.14146 -15.68728 -15.40021 -15.07301 -14.72148 -14.61146 -14.47939 -14.09865 -13.83309 -13.48210 -13.29168 -13.13211 -12.99841 -12.88156 -12.67048 -12.51760 -12.42391 -12.35037 -11.75912 -11.63100 -11.28396 -11.18006 -10.91280 -10.75500 -10.27288 -9.91553 -9.71929 -8.82118 -8.41529 -6.21355 -0.19200 0.23386 1.23695 1.27499 1.34195 1.44126 1.63838 1.79208 2.04640 2.10687 2.22458 2.79041 2.91317 3.31157 3.39528 3.51500 3.66928 3.91870 3.98078 4.02569 4.23324 4.33664 4.41294 4.46579 4.48906 4.59041 4.64920 4.78452 4.87569 4.91229 5.20512 5.29308 5.36591 5.37499 5.48046 5.65654 5.84149 6.13900 6.43216 6.89288 6.98985 7.00422 7.13265 8.65911 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.003117 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.846668 B = 8980.076735 C = 9628.903037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.064 0.936 9 S -0.091 6.091 10 C -0.129 4.129 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.065 4.065 14 C -0.157 4.157 15 C 0.567 3.433 16 O -0.582 6.582 17 N -0.693 5.693 18 C 0.151 3.849 19 H 0.083 0.917 20 C 0.074 3.926 21 O -0.575 6.575 22 C -0.106 4.106 23 C 0.474 3.526 24 O -0.551 6.551 25 O -0.512 6.512 26 C -0.046 4.046 27 H 0.275 0.725 28 H 0.137 0.863 29 H 0.176 0.824 30 H 0.167 0.833 31 H 0.411 0.589 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.399 0.601 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.426 0.574 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.209 -21.686 6.064 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.184 4.184 3 Si 0.814 3.186 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.196 1.196 7 C -0.685 4.685 8 H 0.082 0.918 9 S 0.144 5.856 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.140 4.140 13 C -0.083 4.083 14 C -0.162 4.162 15 C 0.355 3.645 16 O -0.463 6.463 17 N -0.345 5.345 18 C 0.047 3.953 19 H 0.101 0.899 20 C -0.005 4.005 21 O -0.384 6.384 22 C -0.143 4.143 23 C 0.318 3.682 24 O -0.441 6.441 25 O -0.326 6.326 26 C -0.068 4.068 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.194 0.806 30 H 0.184 0.816 31 H 0.249 0.751 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.250 0.750 35 H 0.159 0.841 36 H 0.172 0.828 37 H 0.287 0.713 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.577 -21.069 6.435 28.817 hybrid contribution 1.159 1.742 0.122 2.096 sum 19.737 -19.326 6.557 28.391 Atomic orbital electron populations 1.70109 1.07424 1.28766 1.47802 1.25989 0.96079 1.02783 0.93573 0.85009 0.78179 0.76791 0.78669 1.19361 1.18706 1.19638 1.23095 0.94560 0.91776 1.59061 0.91771 1.83412 1.08473 0.98393 1.95353 1.22508 1.03115 1.02766 0.95610 1.22076 0.94476 0.94160 0.97681 1.21545 0.95887 0.97651 0.98886 1.21663 0.98432 0.97421 0.90804 1.20007 0.99561 1.02446 0.94189 1.18299 0.79867 0.78112 0.88227 1.90729 1.61149 1.54769 1.39679 1.45551 1.33829 1.45048 1.10081 1.21034 0.92106 0.97172 0.85028 0.89864 1.22430 0.98119 0.85045 0.94938 1.86353 1.74098 1.21733 1.56170 1.21636 0.89670 0.95089 1.07912 1.23908 0.81442 0.89743 0.73151 1.90859 1.73862 1.30413 1.48983 1.84480 1.21177 1.47294 1.79599 1.21619 0.94201 0.94293 0.96681 0.91624 0.84490 0.80633 0.81595 0.75140 0.89208 0.94967 0.75013 0.84073 0.82849 0.71311 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.64 13.22 21.64 0.29 -55.35 16 2 C 0.02 1.25 5.49 84.84 0.47 1.71 16 3 Si 0.99 46.11 29.55 68.60 2.03 48.13 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.54 -32.71 9.46 67.94 0.64 -32.07 16 8 H 0.06 3.91 7.79 -2.91 -0.02 3.89 16 9 S -0.09 -5.13 21.41 -56.49 -1.21 -6.34 16 10 C -0.13 -5.98 5.45 22.65 0.12 -5.85 16 11 C -0.06 -2.31 9.79 22.48 0.22 -2.09 16 12 C -0.12 -3.19 10.02 22.21 0.22 -2.96 16 13 C -0.06 -1.69 9.54 22.57 0.22 -1.48 16 14 C -0.16 -5.64 5.87 -20.11 -0.12 -5.75 16 15 C 0.57 19.59 7.74 86.79 0.67 20.26 16 16 O -0.58 -25.08 16.01 -3.89 -0.06 -25.15 16 17 N -0.69 -16.12 4.12 -445.39 -1.83 -17.95 16 18 C 0.15 2.77 1.93 44.99 0.09 2.86 16 19 H 0.08 2.04 7.39 -2.39 -0.02 2.03 16 20 C 0.07 1.03 6.85 71.98 0.49 1.52 16 21 O -0.57 -5.98 12.83 -148.98 -1.91 -7.89 16 22 C -0.11 -1.09 5.07 29.85 0.15 -0.94 16 23 C 0.47 7.63 8.19 71.24 0.58 8.22 16 24 O -0.55 -14.86 16.11 21.97 0.35 -14.50 16 25 O -0.51 -5.44 13.42 -51.36 -0.69 -6.13 16 26 C -0.05 -2.09 9.34 22.70 0.21 -1.88 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.17 2.66 6.39 -2.91 -0.02 2.64 16 31 H 0.41 7.16 6.63 -92.71 -0.61 6.55 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.40 1.17 9.12 -74.06 -0.68 0.50 16 35 H 0.14 0.95 7.73 -2.39 -0.02 0.93 16 36 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.43 1.95 9.10 -74.05 -0.67 1.28 16 38 H 0.10 5.23 7.65 -2.91 -0.02 5.21 16 Total: -1.00 -90.19 353.39 0.11 -90.08 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -0.82 Total: 13.55 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 3.97 Total: -18.45 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.55 Total: -73.30 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -2.31 Total: -53.67 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -1.21 Total: -6.34 kcal Total: -90.19 0.11 -90.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.889 kcal (2) G-P(sol) polarization free energy of solvation -90.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds