Wall clock time and date at job start Tue Mar 31 2020 14:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41598 * 114.00350 * 2 1 4 4 C 1.34775 * 120.00020 * 95.57826 * 3 2 1 5 5 O 1.21547 * 119.99743 * 177.58136 * 4 3 2 6 6 C 1.47860 * 120.00306 * 357.58411 * 4 3 2 7 7 C 1.39678 * 120.09883 * 21.16057 * 6 4 3 8 8 C 1.38036 * 120.03851 * 180.02562 * 7 6 4 9 9 C 1.38182 * 120.24294 * 359.67409 * 8 7 6 10 10 C 1.39177 * 120.20227 * 0.60112 * 9 8 7 11 11 S 1.76199 * 120.02354 * 179.69946 * 10 9 8 12 12 C 1.76202 * 99.99654 * 264.83296 * 11 10 9 13 13 H 1.07995 * 120.00582 * 5.02095 * 12 11 10 14 14 C 1.38728 * 119.99656 * 185.02426 * 12 11 10 15 15 N 1.31626 * 120.00533 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99874 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47282 * 59.99786 * 16 14 12 18 18 H 1.48504 * 109.47200 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46844 * 299.99107 * 16 14 12 20 20 C 1.38878 * 119.95611 * 359.42296 * 10 9 8 21 21 C 1.46498 * 119.99826 * 275.58106 * 3 2 1 22 22 H 1.08995 * 109.47276 * 359.97438 * 21 3 2 23 23 C 1.53000 * 109.47145 * 239.99891 * 21 3 2 24 24 C 1.50699 * 109.47337 * 119.99863 * 21 3 2 25 25 O 1.20829 * 119.99519 * 359.97438 * 24 21 3 26 26 O 1.34227 * 120.00345 * 180.02562 * 24 21 3 27 27 H 1.09003 * 109.46988 * 299.99925 * 1 2 3 28 28 H 1.08993 * 109.47180 * 60.00046 * 1 2 3 29 29 H 1.09010 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.98021 * 0.02562 * 7 6 4 31 31 H 1.08001 * 119.87708 * 179.97438 * 8 7 6 32 32 H 1.07999 * 119.89631 * 180.30929 * 9 8 7 33 33 H 0.96992 * 120.00506 * 180.02562 * 15 14 12 34 34 H 1.08004 * 120.11817 * 180.24960 * 20 10 9 35 35 H 1.09005 * 109.46783 * 299.99499 * 23 21 3 36 36 H 1.08994 * 109.47190 * 59.99648 * 23 21 3 37 37 H 1.09000 * 109.47097 * 180.02562 * 23 21 3 38 38 H 0.96699 * 116.99923 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.3827 1.8630 1.1617 5 8 2.9173 2.9546 1.1577 6 6 2.1470 1.1598 2.4408 7 6 1.9574 -0.2240 2.4549 8 6 1.7369 -0.8791 3.6497 9 6 1.7093 -0.1718 4.8365 10 6 1.8913 1.2081 4.8336 11 16 1.8474 2.1063 6.3488 12 6 0.1617 2.6195 6.3513 13 1 -0.5092 2.2740 5.5788 14 6 -0.3036 3.4675 7.3458 15 7 0.5139 3.8884 8.2877 16 14 -2.0908 4.0110 7.3489 17 1 -2.9705 2.8192 7.4531 18 1 -2.3335 4.9076 8.5076 19 1 -2.3892 4.7381 6.0890 20 6 2.1133 1.8757 3.6362 21 6 2.1902 2.0128 -1.2627 22 1 1.8289 1.3984 -2.0873 23 6 3.6766 2.3138 -1.4649 24 6 1.4168 3.3056 -1.2226 25 8 0.7762 3.5960 -0.2401 26 8 1.4388 4.1339 -2.2786 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.9834 -0.7817 1.5304 31 1 1.5902 -1.9490 3.6576 32 1 1.5413 -0.6907 5.7686 33 1 0.1884 4.4809 8.9831 34 1 2.2589 2.9459 3.6314 35 1 4.0383 2.9283 -0.6403 36 1 4.2360 1.3788 -1.4939 37 1 3.8144 2.8494 -2.4042 38 1 0.9269 4.9512 -2.2062 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594038358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:03 Heat of formation + Delta-G solvation = -100.548129 kcal Electronic energy + Delta-G solvation = -25501.808587 eV Core-core repulsion = 21630.703352 eV Total energy + Delta-G solvation = -3871.105235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11042 -40.83185 -39.27854 -38.64247 -37.19413 -35.35960 -34.67661 -32.76977 -31.94573 -30.97354 -27.76948 -27.59484 -26.41152 -24.95787 -23.84257 -22.73350 -21.30995 -20.25603 -19.42782 -18.95653 -18.48835 -17.79085 -17.28790 -16.95734 -16.93603 -16.71657 -16.50977 -15.76910 -15.65942 -15.42599 -15.29929 -14.91356 -14.56626 -14.54184 -14.04947 -13.76769 -13.40102 -13.24893 -13.13519 -13.08809 -12.99047 -12.90837 -12.64128 -12.55928 -12.45374 -11.88549 -11.78442 -11.52421 -11.25195 -11.00886 -10.73097 -10.48045 -9.96726 -9.70158 -8.82408 -8.41120 -6.21403 -0.20473 0.24524 0.43578 1.05639 1.26510 1.35901 1.41941 1.54737 1.66628 2.02485 2.22043 2.66304 2.75342 2.91526 3.39588 3.71171 3.81632 3.85172 3.94036 4.06109 4.16592 4.28195 4.34752 4.41105 4.50035 4.62288 4.68358 4.74711 4.77178 4.88626 5.08135 5.19397 5.27688 5.34113 5.37070 5.48198 5.49205 5.87266 6.13101 6.14459 6.73120 6.87373 6.98663 8.65809 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.003872 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.982739 B = 7230.141138 C = 8025.493139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.123 6.123 3 N -0.464 5.464 4 C 0.585 3.415 5 O -0.540 6.540 6 C -0.163 4.163 7 C -0.062 4.062 8 C -0.125 4.125 9 C -0.059 4.059 10 C -0.131 4.131 11 S -0.092 6.092 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.021 3.979 15 N -0.905 5.905 16 Si 0.990 3.010 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.274 1.274 20 C -0.043 4.043 21 C 0.156 3.844 22 H 0.179 0.821 23 C -0.158 4.158 24 C 0.464 3.536 25 O -0.545 6.545 26 O -0.499 6.499 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.152 0.848 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.137 0.863 33 H 0.275 0.725 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 -11.196 -25.191 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.127 6.127 3 N -0.243 5.243 4 C 0.377 3.623 5 O -0.418 6.418 6 C -0.168 4.168 7 C -0.080 4.080 8 C -0.144 4.144 9 C -0.080 4.080 10 C -0.243 4.243 11 S 0.143 5.857 12 C -0.686 4.686 13 H 0.083 0.917 14 C -0.184 4.184 15 N -0.541 5.541 16 Si 0.812 3.188 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.199 1.199 20 C -0.065 4.065 21 C 0.054 3.946 22 H 0.196 0.804 23 C -0.216 4.216 24 C 0.306 3.694 25 O -0.434 6.434 26 O -0.312 6.312 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.200 0.800 31 H 0.194 0.806 32 H 0.155 0.845 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.914 -10.706 -23.976 26.327 hybrid contribution -2.523 1.489 -0.121 2.932 sum -0.609 -9.218 -24.097 25.807 Atomic orbital electron populations 1.23684 0.79916 1.06406 1.01350 1.90536 1.21903 1.04226 1.95998 1.49762 1.58119 1.11115 1.05254 1.18449 0.76802 0.83595 0.83445 1.90754 1.44248 1.20903 1.85887 1.19846 1.09425 0.96001 0.91510 1.22429 0.93132 0.91678 1.00741 1.21632 1.00318 1.01915 0.90568 1.22097 0.93580 0.92038 1.00258 1.22457 1.05530 0.98030 0.98247 1.83449 1.17018 1.65765 1.19484 1.23023 0.94507 1.35270 1.15753 0.91688 1.25989 1.03832 0.94563 0.94017 1.70096 1.37451 1.32853 1.13734 0.85126 0.76866 0.78720 0.78094 1.18321 1.19271 1.19896 1.21555 0.94459 0.98958 0.91500 1.21100 0.98100 0.88091 0.87315 0.80353 1.22189 0.90207 1.04809 1.04362 1.24176 0.78441 0.86918 0.79897 1.90818 1.42409 1.75394 1.34806 1.84414 1.69776 1.35391 1.41624 0.94882 0.91677 0.83057 0.79958 0.80622 0.84485 0.91630 0.88506 0.92987 0.88475 0.87112 0.70982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.25 10.92 113.37 1.24 0.99 16 2 O -0.12 -2.22 7.73 -38.78 -0.30 -2.52 16 3 N -0.46 -11.38 2.72 -448.98 -1.22 -12.60 16 4 C 0.58 20.43 6.30 86.79 0.55 20.98 16 5 O -0.54 -22.44 13.13 14.45 0.19 -22.25 16 6 C -0.16 -5.97 5.82 -20.11 -0.12 -6.09 16 7 C -0.06 -1.69 8.54 22.57 0.19 -1.50 16 8 C -0.13 -3.34 10.02 22.21 0.22 -3.12 16 9 C -0.06 -2.16 9.79 22.48 0.22 -1.94 16 10 C -0.13 -6.12 5.45 22.65 0.12 -6.00 16 11 S -0.09 -5.20 21.41 -56.49 -1.21 -6.41 16 12 C -0.54 -32.57 9.46 67.94 0.64 -31.93 16 13 H 0.06 3.90 7.79 -2.91 -0.02 3.88 16 14 C 0.02 1.26 5.49 84.84 0.47 1.72 16 15 N -0.91 -55.68 13.22 21.64 0.29 -55.39 16 16 Si 0.99 45.69 29.55 68.60 2.03 47.72 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 C -0.04 -1.96 9.34 22.70 0.21 -1.75 16 21 C 0.16 2.87 3.42 44.25 0.15 3.02 16 22 H 0.18 1.57 8.12 -2.39 -0.02 1.55 16 23 C -0.16 -2.60 9.05 71.98 0.65 -1.95 16 24 C 0.46 10.98 7.03 71.24 0.50 11.48 16 25 O -0.54 -19.02 15.43 28.17 0.43 -18.58 16 26 O -0.50 -7.74 13.33 -51.39 -0.68 -8.42 16 27 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.15 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.18 3.64 5.07 -3.19 -0.02 3.63 16 31 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.14 4.75 8.06 -2.91 -0.02 4.72 16 33 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 34 H 0.10 5.04 7.79 -2.91 -0.02 5.02 16 35 H 0.05 1.29 6.08 -2.38 -0.01 1.28 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.22 8.11 -2.39 -0.02 1.20 16 38 H 0.43 3.90 9.10 -74.06 -0.67 3.22 16 Total: -1.00 -86.82 347.54 5.01 -81.81 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.44 Total: 12.73 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 5.05 Total: -16.07 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.93 Total: -68.00 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.36 Total: -51.78 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.21 Total: -6.41 kcal Total: -86.82 5.01 -81.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594038358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.740 kcal (2) G-P(sol) polarization free energy of solvation -86.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds