Wall clock time and date at job start Tue Mar 31 2020 14:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41597 * 114.00325 * 2 1 4 4 C 1.34779 * 120.00199 * 264.35204 * 3 2 1 5 5 O 1.21545 * 120.00031 * 174.16781 * 4 3 2 6 6 C 1.47857 * 119.99475 * 354.16282 * 4 3 2 7 7 C 1.39678 * 120.10734 * 351.60770 * 6 4 3 8 8 C 1.38030 * 120.03872 * 179.74401 * 7 6 4 9 9 C 1.38178 * 120.24876 * 0.55823 * 8 7 6 10 10 C 1.39186 * 120.19879 * 359.70046 * 9 8 7 11 11 S 1.76197 * 120.01908 * 179.97438 * 10 9 8 12 12 C 1.76199 * 99.99953 * 265.34759 * 11 10 9 13 13 H 1.07997 * 120.00407 * 5.03854 * 12 11 10 14 14 C 1.38732 * 119.99747 * 185.04318 * 12 11 10 15 15 N 1.31625 * 120.00372 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99757 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47204 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46998 * 119.99578 * 16 14 12 19 19 H 1.48492 * 109.46937 * 239.99628 * 16 14 12 20 20 C 1.38874 * 119.95637 * 0.02562 * 10 9 8 21 21 C 1.46503 * 119.99940 * 84.34259 * 3 2 1 22 22 H 1.09003 * 109.46916 * 0.02562 * 21 3 2 23 23 C 1.53004 * 109.46848 * 120.00383 * 21 3 2 24 24 C 1.50692 * 109.47408 * 240.00133 * 21 3 2 25 25 O 1.20827 * 120.00254 * 0.02562 * 24 21 3 26 26 O 1.34239 * 120.00134 * 180.02562 * 24 21 3 27 27 H 1.08995 * 109.47410 * 300.00035 * 1 2 3 28 28 H 1.09002 * 109.46804 * 60.00507 * 1 2 3 29 29 H 1.09004 * 109.47430 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.97217 * 0.02562 * 7 6 4 31 31 H 1.08006 * 119.87867 * 180.27684 * 8 7 6 32 32 H 1.07995 * 119.90467 * 179.71929 * 9 8 7 33 33 H 0.96994 * 119.99924 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.11820 * 180.02562 * 20 10 9 35 35 H 1.09003 * 109.47237 * 180.02562 * 23 21 3 36 36 H 1.09006 * 109.47133 * 300.00184 * 23 21 3 37 37 H 1.08994 * 109.46992 * 59.99944 * 23 21 3 38 38 H 0.96699 * 116.99912 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3841 1.8624 -1.1615 5 8 2.7796 3.0117 -1.1747 6 6 2.3189 1.0884 -2.4196 7 6 2.0343 -0.2787 -2.3872 8 6 1.9686 -0.9988 -3.5630 9 6 2.1948 -0.3749 -4.7749 10 6 2.4844 0.9858 -4.8186 11 16 2.7728 1.7764 -6.3666 12 6 4.5308 1.6811 -6.4361 13 1 5.0733 1.1460 -5.6708 14 6 5.2181 2.2937 -7.4739 15 7 4.5570 2.9456 -8.4069 16 14 7.0820 2.1921 -7.5479 17 1 7.5814 1.4080 -6.3899 18 1 7.4917 1.5266 -8.8106 19 1 7.6545 3.5615 -7.5018 20 6 2.5471 1.7196 -3.6413 21 6 2.1887 2.0136 1.2626 22 1 1.8264 1.3995 2.0871 23 6 3.6749 2.3147 1.4663 24 6 1.4154 3.3063 1.2208 25 8 0.7760 3.5963 0.2375 26 8 1.4370 4.1357 2.2761 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8612 -0.7715 -1.4420 31 1 1.7439 -2.0549 -3.5352 32 1 2.1464 -0.9446 -5.6911 33 1 5.0376 3.3735 -9.1326 34 1 2.7712 2.7756 -3.6721 35 1 3.8117 2.8500 2.4059 36 1 4.2343 1.3796 1.4965 37 1 4.0375 2.9285 0.6418 38 1 0.9252 4.9529 2.2027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594038361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:07 Heat of formation + Delta-G solvation = -70.725206 kcal Electronic energy + Delta-G solvation = -25384.669908 eV Core-core repulsion = 21514.857891 eV Total energy + Delta-G solvation = -3869.812016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05604 -39.69844 -37.94440 -37.60082 -36.25704 -34.45690 -32.47324 -31.45986 -30.46679 -29.86875 -26.84471 -25.55443 -25.49813 -23.72402 -22.44889 -21.52481 -20.27018 -18.77957 -18.09359 -17.61887 -17.34106 -16.73346 -16.05499 -15.97083 -15.64324 -15.32407 -14.82086 -14.49396 -14.29831 -14.16072 -14.04110 -13.69035 -13.37835 -13.17985 -12.86946 -12.62220 -12.28770 -12.22248 -12.04441 -11.68368 -11.66889 -11.10521 -11.08953 -11.07026 -10.86889 -10.72421 -10.41526 -9.94381 -9.69353 -9.39127 -9.13516 -8.92933 -8.53997 -7.95155 -6.67163 -6.25317 -3.98759 1.16245 1.38584 1.76797 1.99438 2.70063 3.00588 3.21444 3.24391 3.31050 3.49296 3.73348 4.12828 4.30893 4.49545 4.62201 4.81219 4.83435 4.96571 5.00746 5.11109 5.27027 5.29106 5.38212 5.47966 5.51717 5.62482 5.81158 5.91146 5.96671 6.04852 6.09695 6.26253 6.33043 6.67561 6.76158 6.98621 7.21664 7.29971 7.61361 7.64005 8.03328 8.36729 9.20652 10.81458 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.003540 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.662320 B = 7907.780905 C = 8670.943147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 O -0.129 6.129 3 N -0.470 5.470 4 C 0.588 3.412 5 O -0.498 6.498 6 C -0.159 4.159 7 C -0.092 4.092 8 C -0.150 4.150 9 C -0.051 4.051 10 C -0.113 4.113 11 S -0.037 6.037 12 C -0.518 4.518 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.871 5.871 16 Si 0.920 3.080 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.015 4.015 21 C 0.161 3.839 22 H 0.132 0.868 23 C -0.163 4.163 24 C 0.463 3.537 25 O -0.487 6.487 26 O -0.516 6.516 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.155 0.845 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.269 0.731 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -6.153 22.376 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 O -0.132 6.132 3 N -0.252 5.252 4 C 0.381 3.619 5 O -0.373 6.373 6 C -0.164 4.164 7 C -0.110 4.110 8 C -0.170 4.170 9 C -0.072 4.072 10 C -0.224 4.224 11 S 0.198 5.802 12 C -0.665 4.665 13 H 0.094 0.906 14 C -0.136 4.136 15 N -0.506 5.506 16 Si 0.746 3.254 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.037 4.037 21 C 0.057 3.943 22 H 0.149 0.851 23 C -0.221 4.221 24 C 0.301 3.699 25 O -0.371 6.371 26 O -0.328 6.328 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.171 0.829 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.985 -5.373 21.112 23.203 hybrid contribution 1.154 -0.032 0.803 1.407 sum -6.831 -5.406 21.915 23.583 Atomic orbital electron populations 1.23448 0.81395 1.04105 1.02111 1.90538 1.20618 1.06421 1.95635 1.50022 1.59640 1.10024 1.05544 1.18603 0.75781 0.85343 0.82168 1.90799 1.46258 1.16133 1.84064 1.19646 1.10013 0.94670 0.92056 1.22352 0.95757 0.93055 0.99824 1.21156 1.03583 0.99745 0.92537 1.21992 0.93452 0.93858 0.97904 1.22775 1.02195 0.96408 1.01003 1.83588 1.09785 1.74442 1.12391 1.22893 0.90041 1.39668 1.13946 0.90569 1.25001 0.99602 0.94207 0.94779 1.69999 1.36016 1.32604 1.12012 0.86075 0.82892 0.78159 0.78236 1.19479 1.20492 1.20463 1.21933 0.91458 1.00439 0.89853 1.20645 0.97425 0.88487 0.87720 0.85052 1.22174 0.91173 1.04241 1.04489 1.23709 0.79577 0.86222 0.80356 1.90793 1.39796 1.74066 1.32482 1.84465 1.70024 1.34850 1.43450 0.92950 0.91924 0.87085 0.82867 0.85993 0.85238 0.92157 0.84567 0.89599 0.90143 0.89738 0.72888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 10.89 101.05 1.10 0.99 16 2 O -0.13 -1.38 7.58 -11.47 -0.09 -1.47 16 3 N -0.47 -6.15 2.72 -55.87 -0.15 -6.30 16 4 C 0.59 10.16 6.50 -12.32 -0.08 10.08 16 5 O -0.50 -9.94 12.81 -16.29 -0.21 -10.15 16 6 C -0.16 -2.90 5.86 -105.00 -0.62 -3.51 16 7 C -0.09 -1.39 8.82 -39.12 -0.35 -1.74 16 8 C -0.15 -2.30 10.02 -39.68 -0.40 -2.69 16 9 C -0.05 -0.95 9.79 -39.25 -0.38 -1.34 16 10 C -0.11 -2.51 5.45 -38.99 -0.21 -2.73 16 11 S -0.04 -0.97 21.41 -107.50 -2.30 -3.27 16 12 C -0.52 -14.92 9.46 30.91 0.29 -14.62 16 13 H 0.08 2.18 7.79 -52.49 -0.41 1.77 16 14 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 15 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 16 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.02 -0.32 9.34 -38.92 -0.36 -0.69 16 21 C 0.16 1.66 3.42 -69.08 -0.24 1.43 16 22 H 0.13 0.88 8.12 -51.93 -0.42 0.45 16 23 C -0.16 -1.56 9.05 37.16 0.34 -1.23 16 24 C 0.46 5.51 6.98 36.00 0.25 5.76 16 25 O -0.49 -7.88 15.16 -25.96 -0.39 -8.28 16 26 O -0.52 -4.31 13.33 -39.28 -0.52 -4.83 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.15 1.92 4.39 -54.80 -0.24 1.68 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.14 3.14 7.67 -52.48 -0.40 2.74 16 35 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.09 6.37 -51.93 -0.33 0.76 16 38 H 0.41 1.96 9.10 45.56 0.41 2.37 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -36.26 346.72 -6.96 -43.23 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.48 Total: 2.49 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.75 Total: -8.30 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.58 Total: -31.40 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.21 Total: -24.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.30 Total: -3.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.26 -6.96 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594038361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.499 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds