Wall clock time and date at job start Tue Mar 31 2020 14:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41597 * 114.00325 * 2 1 4 4 C 1.34779 * 120.00199 * 264.35204 * 3 2 1 5 5 O 1.21545 * 120.00031 * 174.16781 * 4 3 2 6 6 C 1.47857 * 119.99475 * 354.16282 * 4 3 2 7 7 C 1.39678 * 120.10734 * 351.60770 * 6 4 3 8 8 C 1.38030 * 120.03872 * 179.74401 * 7 6 4 9 9 C 1.38178 * 120.24876 * 0.55823 * 8 7 6 10 10 C 1.39186 * 120.19879 * 359.70046 * 9 8 7 11 11 S 1.76197 * 120.01908 * 179.97438 * 10 9 8 12 12 C 1.76199 * 99.99953 * 265.34759 * 11 10 9 13 13 H 1.07997 * 120.00407 * 5.03854 * 12 11 10 14 14 C 1.38732 * 119.99747 * 185.04318 * 12 11 10 15 15 N 1.31625 * 120.00372 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99757 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47204 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46998 * 119.99578 * 16 14 12 19 19 H 1.48492 * 109.46937 * 239.99628 * 16 14 12 20 20 C 1.38874 * 119.95637 * 0.02562 * 10 9 8 21 21 C 1.46503 * 119.99940 * 84.34259 * 3 2 1 22 22 H 1.09003 * 109.46916 * 0.02562 * 21 3 2 23 23 C 1.53004 * 109.46848 * 120.00383 * 21 3 2 24 24 C 1.50692 * 109.47408 * 240.00133 * 21 3 2 25 25 O 1.20827 * 120.00254 * 0.02562 * 24 21 3 26 26 O 1.34239 * 120.00134 * 180.02562 * 24 21 3 27 27 H 1.08995 * 109.47410 * 300.00035 * 1 2 3 28 28 H 1.09002 * 109.46804 * 60.00507 * 1 2 3 29 29 H 1.09004 * 109.47430 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.97217 * 0.02562 * 7 6 4 31 31 H 1.08006 * 119.87867 * 180.27684 * 8 7 6 32 32 H 1.07995 * 119.90467 * 179.71929 * 9 8 7 33 33 H 0.96994 * 119.99924 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.11820 * 180.02562 * 20 10 9 35 35 H 1.09003 * 109.47237 * 180.02562 * 23 21 3 36 36 H 1.09006 * 109.47133 * 300.00184 * 23 21 3 37 37 H 1.08994 * 109.46992 * 59.99944 * 23 21 3 38 38 H 0.96699 * 116.99912 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3841 1.8624 -1.1615 5 8 2.7796 3.0117 -1.1747 6 6 2.3189 1.0884 -2.4196 7 6 2.0343 -0.2787 -2.3872 8 6 1.9686 -0.9988 -3.5630 9 6 2.1948 -0.3749 -4.7749 10 6 2.4844 0.9858 -4.8186 11 16 2.7728 1.7764 -6.3666 12 6 4.5308 1.6811 -6.4361 13 1 5.0733 1.1460 -5.6708 14 6 5.2181 2.2937 -7.4739 15 7 4.5570 2.9456 -8.4069 16 14 7.0820 2.1921 -7.5479 17 1 7.5814 1.4080 -6.3899 18 1 7.4917 1.5266 -8.8106 19 1 7.6545 3.5615 -7.5018 20 6 2.5471 1.7196 -3.6413 21 6 2.1887 2.0136 1.2626 22 1 1.8264 1.3995 2.0871 23 6 3.6749 2.3147 1.4663 24 6 1.4154 3.3063 1.2208 25 8 0.7760 3.5963 0.2375 26 8 1.4370 4.1357 2.2761 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8612 -0.7715 -1.4420 31 1 1.7439 -2.0549 -3.5352 32 1 2.1464 -0.9446 -5.6911 33 1 5.0376 3.3735 -9.1326 34 1 2.7712 2.7756 -3.6721 35 1 3.8117 2.8500 2.4059 36 1 4.2343 1.3796 1.4965 37 1 4.0375 2.9285 0.6418 38 1 0.9252 4.9529 2.2027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594038361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:06 Heat of formation + Delta-G solvation = -95.709104 kcal Electronic energy + Delta-G solvation = -25385.753291 eV Core-core repulsion = 21514.857891 eV Total energy + Delta-G solvation = -3870.895399 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.09493 -40.80587 -39.25276 -38.67912 -37.14053 -35.37916 -34.66387 -32.75067 -31.92870 -30.97256 -27.75933 -27.57427 -26.42794 -24.92148 -23.86005 -22.70004 -21.30203 -20.24893 -19.40236 -18.91999 -18.46393 -17.91569 -17.23772 -16.94553 -16.89087 -16.73819 -16.49865 -15.68661 -15.64006 -15.42069 -15.36474 -14.92521 -14.55861 -14.52464 -13.98840 -13.75465 -13.39896 -13.25822 -13.11529 -12.98693 -12.95286 -12.91004 -12.62770 -12.53947 -12.43970 -11.86474 -11.74380 -11.48236 -11.25096 -11.01379 -10.66810 -10.46826 -9.96159 -9.69367 -8.81843 -8.40188 -6.20545 -0.23109 0.25010 0.44314 1.10125 1.28848 1.35731 1.45825 1.57649 1.68527 2.04860 2.22914 2.66938 2.79501 2.92762 3.40884 3.72203 3.81606 3.85185 3.95150 4.09111 4.19879 4.31074 4.36493 4.43178 4.52685 4.61888 4.69418 4.73562 4.77500 4.89758 5.08670 5.16073 5.28080 5.36429 5.39148 5.49091 5.53051 5.88947 6.15126 6.16406 6.75599 6.91551 7.00046 8.67227 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.003540 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.662320 B = 7907.780905 C = 8670.943147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 O -0.125 6.125 3 N -0.464 5.464 4 C 0.583 3.417 5 O -0.538 6.538 6 C -0.165 4.165 7 C -0.069 4.069 8 C -0.127 4.127 9 C -0.058 4.058 10 C -0.133 4.133 11 S -0.095 6.095 12 C -0.536 4.536 13 H 0.066 0.934 14 C 0.020 3.980 15 N -0.906 5.906 16 Si 0.993 3.007 17 H -0.266 1.266 18 H -0.264 1.264 19 H -0.272 1.272 20 C -0.042 4.042 21 C 0.156 3.844 22 H 0.180 0.820 23 C -0.158 4.158 24 C 0.465 3.535 25 O -0.539 6.539 26 O -0.501 6.501 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.153 0.847 30 H 0.193 0.807 31 H 0.176 0.824 32 H 0.137 0.863 33 H 0.274 0.726 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 -9.245 25.709 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 O -0.128 6.128 3 N -0.244 5.244 4 C 0.375 3.625 5 O -0.416 6.416 6 C -0.170 4.170 7 C -0.087 4.087 8 C -0.147 4.147 9 C -0.079 4.079 10 C -0.244 4.244 11 S 0.140 5.860 12 C -0.683 4.683 13 H 0.085 0.915 14 C -0.185 4.185 15 N -0.543 5.543 16 Si 0.815 3.185 17 H -0.190 1.190 18 H -0.189 1.189 19 H -0.197 1.197 20 C -0.064 4.064 21 C 0.054 3.946 22 H 0.197 0.803 23 C -0.216 4.216 24 C 0.306 3.694 25 O -0.428 6.428 26 O -0.314 6.314 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.170 0.830 30 H 0.209 0.791 31 H 0.193 0.807 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -7.932 -8.477 24.504 27.115 hybrid contribution 0.977 0.878 -0.008 1.313 sum -6.955 -7.600 24.496 26.575 Atomic orbital electron populations 1.23738 0.79576 1.06562 1.01718 1.90450 1.22271 1.04541 1.95521 1.49751 1.58698 1.10759 1.05199 1.18458 0.75999 0.84874 0.83158 1.90778 1.48045 1.17698 1.85046 1.19858 1.09448 0.96238 0.91434 1.22855 0.92856 0.91368 1.01626 1.21660 1.00530 1.01935 0.90547 1.22118 0.93528 0.92203 1.00077 1.22458 1.05568 0.98017 0.98373 1.83457 1.09516 1.76282 1.16737 1.23102 0.91104 1.40059 1.14080 0.91545 1.26017 1.04951 0.93468 0.94074 1.70116 1.38170 1.33317 1.12680 0.84986 0.76241 0.78503 0.78782 1.19030 1.18855 1.19716 1.21600 0.94173 0.99079 0.91523 1.21076 0.97787 0.88354 0.87377 0.80269 1.22163 0.90638 1.04633 1.04172 1.24062 0.78536 0.86832 0.79935 1.90790 1.42239 1.75313 1.34430 1.84422 1.69878 1.35370 1.41756 0.91551 0.94263 0.82958 0.79142 0.80681 0.84553 0.91674 0.88243 0.86911 0.88642 0.93638 0.71006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.24 10.89 113.37 1.23 1.00 16 2 O -0.13 -2.15 7.58 -38.78 -0.29 -2.44 16 3 N -0.46 -11.18 2.72 -448.97 -1.22 -12.40 16 4 C 0.58 20.34 6.50 86.79 0.56 20.90 16 5 O -0.54 -22.72 12.81 16.81 0.22 -22.50 16 6 C -0.16 -6.04 5.86 -20.11 -0.12 -6.16 16 7 C -0.07 -1.91 8.82 22.57 0.20 -1.71 16 8 C -0.13 -3.43 10.02 22.21 0.22 -3.21 16 9 C -0.06 -2.15 9.79 22.48 0.22 -1.93 16 10 C -0.13 -6.20 5.45 22.65 0.12 -6.08 16 11 S -0.09 -5.35 21.41 -56.49 -1.21 -6.56 16 12 C -0.54 -32.40 9.46 67.94 0.64 -31.76 16 13 H 0.07 3.99 7.79 -2.91 -0.02 3.97 16 14 C 0.02 1.17 5.49 84.84 0.47 1.64 16 15 N -0.91 -55.71 13.22 21.64 0.29 -55.42 16 16 Si 0.99 45.58 29.55 68.60 2.03 47.61 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 C -0.04 -1.91 9.34 22.70 0.21 -1.70 16 21 C 0.16 2.81 3.42 44.24 0.15 2.96 16 22 H 0.18 1.48 8.12 -2.39 -0.02 1.46 16 23 C -0.16 -2.71 9.05 71.98 0.65 -2.06 16 24 C 0.47 10.50 6.98 71.23 0.50 11.00 16 25 O -0.54 -17.71 15.16 28.85 0.44 -17.27 16 26 O -0.50 -7.34 13.33 -51.50 -0.69 -8.03 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.19 3.80 4.39 -39.62 -0.17 3.62 16 31 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.10 5.15 7.67 -2.91 -0.02 5.13 16 35 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 36 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.04 1.17 6.37 -2.39 -0.02 1.16 16 38 H 0.43 3.41 9.10 -74.06 -0.67 2.73 16 Total: -1.00 -87.10 346.72 4.90 -82.20 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.28 Total: 11.91 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.07 Total: -17.11 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.93 Total: -67.82 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.33 Total: -50.23 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.21 Total: -6.56 kcal Total: -87.10 4.90 -82.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594038361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.507 kcal (2) G-P(sol) polarization free energy of solvation -87.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds