Wall clock time and date at job start Tue Mar 31 2020 13:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99559 * 2 1 4 4 H 1.48496 * 109.47214 * 269.99744 * 3 2 1 5 5 H 1.48496 * 109.47166 * 29.99887 * 3 2 1 6 6 H 1.48496 * 109.46623 * 149.99684 * 3 2 1 7 7 C 1.37873 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00093 * 180.02562 * 7 2 1 10 10 S 1.81399 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00125 * 179.97438 * 10 9 7 12 12 C 1.38782 * 120.10682 * 359.95629 * 11 10 9 13 13 C 1.38191 * 119.99201 * 180.02562 * 12 11 10 14 14 C 1.38304 * 120.20073 * 359.97438 * 13 12 11 15 15 C 1.38254 * 120.20737 * 0.02728 * 14 13 12 16 16 C 1.38648 * 120.00935 * 359.97261 * 15 14 13 17 17 N 1.40134 * 120.10201 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00068 * 24.81560 * 17 16 15 19 19 O 1.21297 * 119.99760 * 5.53391 * 18 17 16 20 20 C 1.50694 * 120.00342 * 185.53129 * 18 17 16 21 21 O 1.42901 * 109.47439 * 180.02562 * 20 18 17 22 22 C 1.42897 * 114.00150 * 179.97438 * 21 20 18 23 23 C 1.50704 * 109.47292 * 179.97438 * 22 21 20 24 24 O 1.20823 * 119.99749 * 359.97438 * 23 22 21 25 25 O 1.34221 * 120.00295 * 180.02562 * 23 22 21 26 26 H 0.96999 * 120.00173 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47597 * 60.00006 * 9 7 2 28 28 H 1.09002 * 109.47181 * 299.99979 * 9 7 2 29 29 H 1.08006 * 120.00413 * 359.97438 * 12 11 10 30 30 H 1.08001 * 119.90603 * 180.27597 * 13 12 11 31 31 H 1.07995 * 119.89742 * 180.02562 * 14 13 12 32 32 H 1.08003 * 119.99544 * 180.02562 * 15 14 13 33 33 H 0.97000 * 120.00215 * 204.82117 * 17 16 15 34 34 H 1.09003 * 109.47333 * 300.00350 * 20 18 17 35 35 H 1.09001 * 109.47396 * 60.00192 * 20 18 17 36 36 H 1.08998 * 109.47161 * 299.99883 * 22 21 20 37 37 H 1.09006 * 109.47229 * 60.00191 * 22 21 20 38 38 H 0.96695 * 117.00250 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 16 4.1163 -2.9041 0.0010 11 6 5.8671 -2.7055 0.0009 12 6 6.4234 -1.4340 0.0001 13 6 7.7968 -1.2810 -0.0005 14 6 8.6206 -2.3919 0.0003 15 6 8.0753 -3.6623 0.0011 16 6 6.6985 -3.8259 0.0017 17 7 6.1436 -5.1127 0.0031 18 6 6.8498 -6.1506 0.4937 19 8 7.9229 -5.9568 1.0249 20 6 6.3063 -7.5517 0.3823 21 8 7.2299 -8.4692 0.9714 22 6 6.8075 -9.8333 0.9189 23 6 7.8515 -10.7077 1.5643 24 8 8.8546 -10.2135 2.0218 25 8 7.6676 -12.0357 1.6299 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 5.7830 -0.5643 -0.0010 30 1 8.2283 -0.2909 0.0034 31 1 9.6933 -2.2666 0.0003 32 1 8.7218 -4.5274 0.0022 33 1 5.2514 -5.2566 -0.3492 34 1 5.3509 -7.6133 0.9035 35 1 6.1636 -7.8036 -0.6686 36 1 5.8626 -9.9419 1.4512 37 1 6.6754 -10.1330 -0.1208 38 1 8.3650 -12.5551 2.0528 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:35 Heat of formation + Delta-G solvation = -134.120635 kcal Electronic energy + Delta-G solvation = -23657.801248 eV Core-core repulsion = 19785.240200 eV Total energy + Delta-G solvation = -3872.561048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75690 -40.47146 -38.64611 -37.66834 -36.42790 -34.81831 -33.22088 -30.99360 -30.71214 -29.47960 -29.26654 -27.17915 -23.37424 -22.84546 -22.25476 -22.07862 -20.50497 -18.69333 -18.15896 -17.69060 -17.24380 -17.15413 -16.87989 -16.55161 -16.24104 -15.96980 -15.05676 -14.97323 -14.70132 -14.27788 -14.10998 -13.70740 -13.43041 -13.36250 -13.33150 -12.86090 -12.58753 -12.52432 -12.47452 -11.94783 -11.88763 -11.36732 -10.94404 -10.89442 -10.66202 -10.43583 -10.39474 -10.32649 -9.85207 -9.77058 -9.34875 -9.33557 -8.83199 -8.15611 -6.77897 -6.32135 -4.36623 1.33906 1.53627 1.76448 1.86746 2.17825 2.45645 2.82284 3.12320 3.19313 3.20900 3.33161 3.76807 3.94893 4.18973 4.32545 4.52119 4.54420 4.66330 4.75212 4.77463 4.99174 5.10313 5.20502 5.43336 5.64224 5.65246 6.03158 6.03365 6.21043 6.34858 6.37902 6.41390 6.47881 6.56088 6.71653 7.13822 7.23604 7.30230 7.46227 7.95651 8.12752 8.66952 9.22526 10.79378 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002522 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.403172 B =11101.380310 C =12484.792220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.034 3.966 10 S -0.132 6.132 11 C -0.103 4.103 12 C -0.118 4.118 13 C -0.117 4.117 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.154 3.846 17 N -0.658 5.658 18 C 0.513 3.487 19 O -0.496 6.496 20 C 0.046 3.954 21 O -0.343 6.343 22 C 0.070 3.930 23 C 0.478 3.522 24 O -0.487 6.487 25 O -0.516 6.516 26 H 0.270 0.730 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.145 0.855 33 H 0.415 0.585 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.349 -17.509 -1.461 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.122 4.122 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.103 0.897 9 C -0.114 4.114 10 S 0.114 5.886 11 C -0.218 4.218 12 C -0.143 4.143 13 C -0.137 4.137 14 C -0.140 4.140 15 C -0.137 4.137 16 C 0.054 3.946 17 N -0.305 5.305 18 C 0.299 3.701 19 O -0.369 6.369 20 C -0.034 4.034 21 O -0.261 6.261 22 C -0.008 4.008 23 C 0.318 3.682 24 O -0.372 6.372 25 O -0.330 6.330 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.162 0.838 33 H 0.253 0.747 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 13.295 -17.893 -1.045 22.316 hybrid contribution 0.747 1.657 0.002 1.818 sum 14.042 -16.235 -1.043 21.491 Atomic orbital electron populations 1.69847 1.06148 1.27566 1.48729 1.24823 0.94770 0.98771 0.93823 0.86833 0.80423 0.83529 0.78996 1.19672 1.20591 1.18909 1.20377 0.86446 0.95498 1.53764 0.89696 1.21726 1.01357 0.88295 0.99974 1.85055 0.93339 1.19513 1.90700 1.21881 0.99084 0.94821 1.06050 1.21126 0.95710 0.95599 1.01849 1.21035 0.93083 0.98737 1.00887 1.20969 0.99583 0.91914 1.01580 1.21255 0.92831 0.98723 1.00872 1.17134 0.91875 0.82265 1.03348 1.43336 1.20125 1.05668 1.61356 1.20160 0.85521 0.85956 0.78435 1.90736 1.21232 1.84753 1.40194 1.22252 0.93356 0.87676 1.00066 1.88061 1.43872 1.13524 1.80651 1.21651 0.95015 0.82259 1.01859 1.22803 0.86880 0.81323 0.77211 1.90814 1.28999 1.74645 1.42733 1.84435 1.52918 1.19890 1.75726 0.91993 0.93770 0.94255 0.85263 0.86056 0.85930 0.83757 0.74739 0.88886 0.88992 0.88235 0.88332 0.72319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 20.05 27.47 -169.99 -4.67 15.38 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.26 -5.76 6.54 56.52 0.37 -5.40 16 7 C -0.52 -14.01 9.68 -34.44 -0.33 -14.34 16 8 H 0.09 2.47 7.96 -52.48 -0.42 2.06 16 9 C 0.03 0.77 3.16 36.00 0.11 0.89 16 10 S -0.13 -2.56 20.55 -107.50 -2.21 -4.76 16 11 C -0.10 -1.81 6.12 -38.90 -0.24 -2.05 16 12 C -0.12 -1.99 9.36 -39.40 -0.37 -2.36 16 13 C -0.12 -1.69 10.04 -39.57 -0.40 -2.08 16 14 C -0.12 -1.66 10.04 -39.55 -0.40 -2.06 16 15 C -0.12 -1.79 8.72 -39.42 -0.34 -2.13 16 16 C 0.15 2.48 6.44 -83.43 -0.54 1.94 16 17 N -0.66 -8.78 5.17 -9.71 -0.05 -8.83 16 18 C 0.51 6.74 7.71 -10.99 -0.08 6.66 16 19 O -0.50 -8.55 13.67 -14.37 -0.20 -8.75 16 20 C 0.05 0.39 6.42 36.00 0.23 0.62 16 21 O -0.34 -3.76 9.41 -64.76 -0.61 -4.37 16 22 C 0.07 0.45 6.53 36.01 0.24 0.69 16 23 C 0.48 4.13 8.40 36.01 0.30 4.43 16 24 O -0.49 -6.61 17.26 -25.47 -0.44 -7.05 16 25 O -0.52 -2.74 13.42 -39.23 -0.53 -3.27 16 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.04 1.00 6.81 -51.92 -0.35 0.65 16 28 H 0.04 0.86 7.17 -51.92 -0.37 0.49 16 29 H 0.13 2.23 5.88 -52.48 -0.31 1.92 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.14 2.27 5.79 -52.48 -0.30 1.97 16 33 H 0.42 4.75 7.65 -40.82 -0.31 4.43 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.42 0.61 9.10 45.56 0.41 1.03 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -36.52 347.11 -7.97 -44.49 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.36 Total: 4.41 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.92 Total: -7.61 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.72 Total: -33.71 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.77 Total: -23.43 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.21 Total: -4.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.52 -7.97 -44.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.627 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds