Wall clock time and date at job start Tue Mar 31 2020 13:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99559 * 2 1 4 4 H 1.48496 * 109.47214 * 269.99744 * 3 2 1 5 5 H 1.48496 * 109.47166 * 29.99887 * 3 2 1 6 6 H 1.48496 * 109.46623 * 149.99684 * 3 2 1 7 7 C 1.37873 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00093 * 180.02562 * 7 2 1 10 10 S 1.81399 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00125 * 179.97438 * 10 9 7 12 12 C 1.38782 * 120.10682 * 359.95629 * 11 10 9 13 13 C 1.38191 * 119.99201 * 180.02562 * 12 11 10 14 14 C 1.38304 * 120.20073 * 359.97438 * 13 12 11 15 15 C 1.38254 * 120.20737 * 0.02728 * 14 13 12 16 16 C 1.38648 * 120.00935 * 359.97261 * 15 14 13 17 17 N 1.40134 * 120.10201 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00068 * 24.81560 * 17 16 15 19 19 O 1.21297 * 119.99760 * 5.53391 * 18 17 16 20 20 C 1.50694 * 120.00342 * 185.53129 * 18 17 16 21 21 O 1.42901 * 109.47439 * 180.02562 * 20 18 17 22 22 C 1.42897 * 114.00150 * 179.97438 * 21 20 18 23 23 C 1.50704 * 109.47292 * 179.97438 * 22 21 20 24 24 O 1.20823 * 119.99749 * 359.97438 * 23 22 21 25 25 O 1.34221 * 120.00295 * 180.02562 * 23 22 21 26 26 H 0.96999 * 120.00173 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47597 * 60.00006 * 9 7 2 28 28 H 1.09002 * 109.47181 * 299.99979 * 9 7 2 29 29 H 1.08006 * 120.00413 * 359.97438 * 12 11 10 30 30 H 1.08001 * 119.90603 * 180.27597 * 13 12 11 31 31 H 1.07995 * 119.89742 * 180.02562 * 14 13 12 32 32 H 1.08003 * 119.99544 * 180.02562 * 15 14 13 33 33 H 0.97000 * 120.00215 * 204.82117 * 17 16 15 34 34 H 1.09003 * 109.47333 * 300.00350 * 20 18 17 35 35 H 1.09001 * 109.47396 * 60.00192 * 20 18 17 36 36 H 1.08998 * 109.47161 * 299.99883 * 22 21 20 37 37 H 1.09006 * 109.47229 * 60.00191 * 22 21 20 38 38 H 0.96695 * 117.00250 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 16 4.1163 -2.9041 0.0010 11 6 5.8671 -2.7055 0.0009 12 6 6.4234 -1.4340 0.0001 13 6 7.7968 -1.2810 -0.0005 14 6 8.6206 -2.3919 0.0003 15 6 8.0753 -3.6623 0.0011 16 6 6.6985 -3.8259 0.0017 17 7 6.1436 -5.1127 0.0031 18 6 6.8498 -6.1506 0.4937 19 8 7.9229 -5.9568 1.0249 20 6 6.3063 -7.5517 0.3823 21 8 7.2299 -8.4692 0.9714 22 6 6.8075 -9.8333 0.9189 23 6 7.8515 -10.7077 1.5643 24 8 8.8546 -10.2135 2.0218 25 8 7.6676 -12.0357 1.6299 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 5.7830 -0.5643 -0.0010 30 1 8.2283 -0.2909 0.0034 31 1 9.6933 -2.2666 0.0003 32 1 8.7218 -4.5274 0.0022 33 1 5.2514 -5.2566 -0.3492 34 1 5.3509 -7.6133 0.9035 35 1 6.1636 -7.8036 -0.6686 36 1 5.8626 -9.9419 1.4512 37 1 6.6754 -10.1330 -0.1208 38 1 8.3650 -12.5551 2.0528 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:34 Heat of formation + Delta-G solvation = -160.221965 kcal Electronic energy + Delta-G solvation = -23658.933087 eV Core-core repulsion = 19785.240200 eV Total energy + Delta-G solvation = -3873.692887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69503 -41.23624 -39.63017 -38.49164 -37.06485 -35.95495 -35.24187 -32.32156 -31.61984 -31.26614 -30.11298 -27.93840 -25.03939 -24.12751 -23.41000 -22.78943 -21.57226 -19.61855 -19.22624 -18.84379 -18.48564 -18.07806 -17.80106 -17.41834 -17.06805 -16.77398 -16.62432 -16.03401 -15.89096 -15.56836 -15.20746 -15.02674 -14.92777 -14.68673 -14.37303 -14.21831 -14.01187 -13.30570 -13.23756 -13.09979 -12.76569 -12.66072 -12.59381 -12.20406 -12.11542 -11.77230 -11.60322 -11.57835 -11.00993 -10.94641 -10.93263 -10.86407 -10.59175 -9.34657 -8.40154 -8.22199 -6.50598 0.16288 0.31173 0.66895 1.14854 1.28787 1.33854 1.35245 1.44658 1.46099 1.72022 2.05738 2.27083 2.76047 2.93247 3.11186 3.52176 3.85755 4.07679 4.14687 4.16942 4.20438 4.29624 4.31934 4.36076 4.44782 4.49063 4.54570 4.65852 4.85362 5.10896 5.24453 5.28609 5.41048 5.54091 5.55930 5.77843 5.98667 6.01901 6.30105 6.53204 6.95440 6.96688 7.12712 8.74824 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.002522 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.403172 B =11101.380310 C =12484.792220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.026 3.974 3 Si 0.944 3.056 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.245 1.245 7 C -0.531 4.531 8 H 0.046 0.954 9 C 0.034 3.966 10 S -0.132 6.132 11 C -0.124 4.124 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.150 3.850 17 N -0.655 5.655 18 C 0.508 3.492 19 O -0.543 6.543 20 C 0.051 3.949 21 O -0.387 6.387 22 C 0.065 3.935 23 C 0.481 3.519 24 O -0.549 6.549 25 O -0.504 6.504 26 H 0.273 0.727 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.124 0.876 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.423 0.577 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.753 -17.724 -2.095 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.064 0.936 9 C -0.114 4.114 10 S 0.113 5.887 11 C -0.239 4.239 12 C -0.156 4.156 13 C -0.135 4.135 14 C -0.129 4.129 15 C -0.149 4.149 16 C 0.049 3.951 17 N -0.302 5.302 18 C 0.297 3.703 19 O -0.420 6.420 20 C -0.027 4.027 21 O -0.306 6.306 22 C -0.011 4.011 23 C 0.324 3.676 24 O -0.439 6.439 25 O -0.318 6.318 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.142 0.858 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.262 0.738 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 14.686 -18.167 -1.696 23.422 hybrid contribution 0.369 1.527 0.201 1.584 sum 15.055 -16.640 -1.494 22.490 Atomic orbital electron populations 1.69989 1.08097 1.28815 1.50327 1.25785 0.95599 1.02914 0.93238 0.85756 0.79653 0.78282 0.79727 1.18470 1.20361 1.16894 1.20567 0.88802 0.94222 1.53371 0.93585 1.21493 0.98619 0.91065 1.00208 1.84847 0.95461 1.16651 1.91728 1.21831 0.97507 0.95907 1.08676 1.21272 0.96975 0.95058 1.02299 1.21343 0.91989 1.00387 0.99735 1.21375 1.01262 0.91070 0.99166 1.21403 0.92586 0.99492 1.01448 1.17314 0.92136 0.83044 1.02561 1.43405 1.20509 1.05082 1.61181 1.21128 0.84743 0.87580 0.76838 1.90708 1.23358 1.85610 1.42280 1.22392 0.93311 0.84220 1.02791 1.87991 1.45555 1.15658 1.81431 1.22020 0.94992 0.79925 1.04211 1.23382 0.86325 0.82088 0.75783 1.90795 1.31608 1.75797 1.45717 1.84413 1.53440 1.18669 1.75303 0.91739 0.93642 0.93417 0.85848 0.82949 0.82805 0.84142 0.73786 0.85796 0.84997 0.85092 0.84709 0.70477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 2 C 0.03 1.42 5.47 84.65 0.46 1.88 16 3 Si 0.94 40.96 27.47 68.60 1.88 42.84 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.25 -9.81 6.54 99.48 0.65 -9.16 16 7 C -0.53 -29.15 9.68 25.60 0.25 -28.90 16 8 H 0.05 2.81 7.96 -2.91 -0.02 2.78 16 9 C 0.03 1.54 3.16 71.23 0.23 1.77 16 10 S -0.13 -5.08 20.55 -56.49 -1.16 -6.24 16 11 C -0.12 -4.25 6.12 22.71 0.14 -4.12 16 12 C -0.13 -4.23 9.36 22.39 0.21 -4.02 16 13 C -0.11 -2.98 10.04 22.27 0.22 -2.75 16 14 C -0.11 -2.73 10.04 22.29 0.22 -2.51 16 15 C -0.13 -3.80 8.72 22.37 0.20 -3.61 16 16 C 0.15 4.71 6.44 38.22 0.25 4.95 16 17 N -0.66 -16.85 5.17 -303.01 -1.57 -18.42 16 18 C 0.51 12.87 7.71 87.66 0.68 13.54 16 19 O -0.54 -18.79 13.67 15.95 0.22 -18.57 16 20 C 0.05 0.73 6.42 71.23 0.46 1.19 16 21 O -0.39 -7.88 9.41 -120.75 -1.14 -9.01 16 22 C 0.06 0.67 6.53 71.24 0.47 1.13 16 23 C 0.48 7.77 8.40 71.24 0.60 8.36 16 24 O -0.55 -15.21 17.26 28.40 0.49 -14.72 16 25 O -0.50 -4.40 13.42 -51.33 -0.69 -5.09 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.05 2.02 6.81 -2.39 -0.02 2.01 16 28 H 0.05 2.06 7.17 -2.39 -0.02 2.04 16 29 H 0.12 4.06 5.88 -2.91 -0.02 4.04 16 30 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.14 4.35 5.79 -2.91 -0.02 4.34 16 33 H 0.42 9.20 7.65 -92.71 -0.71 8.49 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.14 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.43 0.67 9.10 -74.06 -0.67 0.00 16 Total: -1.00 -83.78 347.11 2.40 -81.37 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -0.30 Total: 16.03 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.37 Total: -13.08 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.27 Total: -73.53 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -1.12 Total: -47.40 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.84 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.16 Total: -6.24 kcal Total: -83.78 2.40 -81.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.848 kcal (2) G-P(sol) polarization free energy of solvation -83.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds