Wall clock time and date at job start Tue Mar 31 2020 13:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99507 * 2 1 4 4 H 1.48495 * 109.47389 * 240.00018 * 3 2 1 5 5 H 1.48500 * 109.47541 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46884 * 120.00457 * 3 2 1 7 7 C 1.38805 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00230 * 165.42566 * 7 2 1 9 9 N 1.36937 * 119.99965 * 345.42630 * 7 2 1 10 10 C 1.46503 * 119.99719 * 307.67045 * 9 7 2 11 11 C 1.52997 * 117.49931 * 1.76028 * 10 9 7 12 12 C 1.52997 * 60.00163 * 252.50854 * 11 10 9 13 13 S 1.65599 * 120.00246 * 127.67598 * 9 7 2 14 14 O 1.42101 * 104.27560 * 153.92469 * 13 9 7 15 15 O 1.42099 * 104.27531 * 26.06833 * 13 9 7 16 16 C 1.81397 * 104.44910 * 269.99795 * 13 9 7 17 17 C 1.50702 * 109.47215 * 179.97438 * 16 13 9 18 18 C 1.38363 * 119.84886 * 90.00127 * 17 16 13 19 19 C 1.37939 * 120.14979 * 180.27926 * 18 17 16 20 20 C 1.39623 * 119.84869 * 359.48897 * 19 18 17 21 21 C 1.47728 * 120.15175 * 180.23728 * 20 19 18 22 22 O 1.21474 * 120.00251 * 180.27592 * 21 20 19 23 23 O 1.34705 * 120.00014 * 0.26969 * 21 20 19 24 24 C 1.39637 * 119.70092 * 0.50719 * 20 19 18 25 25 C 1.37940 * 119.84300 * 359.74650 * 24 20 19 26 26 H 0.96998 * 120.00444 * 357.80949 * 1 2 3 27 27 H 1.09007 * 115.54677 * 147.46292 * 10 9 7 28 28 H 1.09004 * 117.50004 * 359.97438 * 11 10 9 29 29 H 1.08997 * 117.49958 * 145.01335 * 11 10 9 30 30 H 1.09000 * 117.49907 * 252.51358 * 12 11 10 31 31 H 1.08999 * 117.52377 * 107.47948 * 12 11 10 32 32 H 1.09007 * 109.46881 * 59.99847 * 16 13 9 33 33 H 1.09005 * 109.47102 * 300.00369 * 16 13 9 34 34 H 1.07999 * 119.92272 * 359.97438 * 18 17 16 35 35 H 1.08003 * 120.07910 * 179.72114 * 19 18 17 36 36 H 0.96702 * 117.00098 * 180.02562 * 23 21 20 37 37 H 1.07998 * 120.07483 * 179.72421 * 24 20 19 38 38 H 1.08000 * 119.92553 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0642 -1.2170 -0.2359 9 7 1.3587 -2.3690 0.2973 10 6 0.5683 -2.4735 1.5264 11 6 0.4763 -1.2313 2.4149 12 6 1.3220 -2.4271 2.8571 13 16 1.4643 -3.6623 -0.7316 14 8 1.2503 -4.7924 0.1029 15 8 2.7005 -3.4733 -1.4062 16 6 0.0744 -3.4442 -1.8767 17 6 0.0639 -4.5733 -2.8748 18 6 -0.6443 -5.7296 -2.5991 19 6 -0.6534 -6.7692 -3.5056 20 6 0.0453 -6.6485 -4.7084 21 6 0.0358 -7.7557 -5.6864 22 8 0.6488 -7.6498 -6.7298 23 8 -0.6526 -8.8827 -5.4211 24 6 0.7579 -5.4788 -4.9802 25 6 0.7628 -4.4491 -4.0625 26 1 -0.4851 0.8394 0.0321 27 1 -0.3098 -3.1166 1.4674 28 1 1.0042 -0.3364 2.0851 29 1 -0.4625 -1.0568 2.9404 30 1 0.9395 -3.0395 3.6737 31 1 2.4059 -2.3194 2.8182 32 1 0.1825 -2.4956 -2.4028 33 1 -0.8610 -3.4447 -1.3170 34 1 -1.1871 -5.8202 -1.6698 35 1 -1.2029 -7.6730 -3.2873 36 1 -0.6289 -9.5796 -6.0911 37 1 1.3042 -5.3808 -5.9067 38 1 1.3139 -3.5440 -4.2712 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:48 Heat of formation + Delta-G solvation = -102.850679 kcal Electronic energy + Delta-G solvation = -25332.486709 eV Core-core repulsion = 21461.281628 eV Total energy + Delta-G solvation = -3871.205081 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43954 -38.77371 -37.36928 -36.19131 -35.77501 -34.59353 -33.13491 -32.86276 -31.17930 -30.97771 -27.70520 -25.12502 -23.51075 -22.62902 -21.41515 -20.92985 -20.79944 -18.52699 -18.20634 -17.48355 -16.99408 -16.70294 -15.81308 -15.69357 -15.29529 -15.13513 -14.86784 -14.57480 -14.34473 -13.89404 -13.59643 -13.45742 -13.15951 -12.68521 -12.42531 -12.05434 -11.93303 -11.71337 -11.62301 -11.53010 -11.28265 -11.00177 -10.87945 -10.80975 -10.75218 -10.69713 -10.52794 -10.47475 -10.21665 -9.88727 -9.33704 -8.97337 -8.88266 -8.58885 -7.66349 -6.73561 -4.45236 0.60251 1.41600 1.53048 2.53184 2.92056 3.02723 3.06380 3.09903 3.79028 3.81518 4.11167 4.52718 4.73062 4.79683 4.92682 4.98343 5.04429 5.24634 5.28809 5.43290 5.55754 5.79017 5.83506 5.86192 6.00778 6.04692 6.11954 6.19452 6.30230 6.33458 6.35424 6.43298 6.49820 6.64294 6.86124 6.89387 7.09679 7.18984 7.44903 7.78129 8.16728 8.51686 9.06348 10.22454 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.003526 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.493009 B = 7939.832225 C = 8573.848937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.048 3.952 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.254 4.254 8 H 0.102 0.898 9 N -0.780 5.780 10 C 0.120 3.880 11 C -0.150 4.150 12 C -0.208 4.208 13 S 2.486 3.514 14 O -0.996 6.996 15 O -0.972 6.972 16 C -0.615 4.615 17 C -0.021 4.021 18 C -0.135 4.135 19 C -0.056 4.056 20 C -0.149 4.149 21 C 0.532 3.468 22 O -0.520 6.520 23 O -0.513 6.513 24 C -0.048 4.048 25 C -0.131 4.131 26 H 0.278 0.722 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.412 0.588 37 H 0.139 0.861 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -5.684 -3.156 7.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.167 4.167 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.402 4.402 8 H 0.119 0.881 9 N -0.602 5.602 10 C 0.011 3.989 11 C -0.189 4.189 12 C -0.248 4.248 13 S 2.588 3.412 14 O -0.986 6.986 15 O -0.962 6.962 16 C -0.732 4.732 17 C -0.023 4.023 18 C -0.154 4.154 19 C -0.074 4.074 20 C -0.151 4.151 21 C 0.377 3.623 22 O -0.410 6.410 23 O -0.324 6.324 24 C -0.066 4.066 25 C -0.149 4.149 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.270 0.730 37 H 0.157 0.843 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.029 -6.197 -3.294 8.092 hybrid contribution -0.444 0.729 -0.829 1.190 sum -4.473 -5.468 -4.123 8.179 Atomic orbital electron populations 1.70060 1.06378 1.29135 1.38993 1.25965 0.95452 1.01035 0.94286 0.86173 0.79739 0.80069 0.80135 1.18859 1.20380 1.18975 1.19598 0.93509 0.82910 1.44188 0.88070 1.52758 1.56246 1.28476 1.22685 1.20857 0.95218 1.01188 0.81624 1.23109 1.00052 0.94012 1.01745 1.23372 0.99519 1.03304 0.98599 1.12989 0.77603 0.76149 0.74470 1.93361 1.87210 1.53658 1.64369 1.93380 1.40536 1.85997 1.76306 1.30245 1.25688 1.02918 1.14305 1.19775 0.94193 0.94191 0.94093 1.21188 1.00672 0.93115 1.00397 1.21394 0.95730 0.98569 0.91725 1.18974 1.06455 0.93951 0.95703 1.20938 0.74804 0.81505 0.85052 1.90869 1.42277 1.81177 1.26663 1.84573 1.68419 1.27222 1.52222 1.21223 0.95150 0.90924 0.99322 1.21193 1.00500 0.99954 0.93288 0.91159 0.87834 0.87320 0.90556 0.90015 0.89120 0.84758 0.85619 0.84519 0.84324 0.73014 0.84332 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.87 11.64 55.49 0.65 -17.22 16 2 C 0.05 1.05 3.14 -17.43 -0.05 1.00 16 3 Si 0.91 17.27 29.44 -169.99 -5.00 12.27 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.25 -5.94 8.21 -15.06 -0.12 -6.06 16 8 H 0.10 2.43 7.69 -52.48 -0.40 2.02 16 9 N -0.78 -17.74 2.94 -53.42 -0.16 -17.90 16 10 C 0.12 2.49 5.41 -67.93 -0.37 2.12 16 11 C -0.15 -2.89 8.36 -26.73 -0.22 -3.12 16 12 C -0.21 -3.90 10.38 -26.73 -0.28 -4.18 16 13 S 2.49 56.12 5.37 -107.50 -0.58 55.55 16 14 O -1.00 -23.97 17.26 -57.54 -0.99 -24.96 16 15 O -0.97 -24.59 17.11 -57.54 -0.98 -25.58 16 16 C -0.61 -11.62 6.30 36.01 0.23 -11.39 16 17 C -0.02 -0.37 5.15 -104.53 -0.54 -0.90 16 18 C -0.14 -2.14 9.68 -39.65 -0.38 -2.52 16 19 C -0.06 -0.79 9.62 -39.17 -0.38 -1.16 16 20 C -0.15 -2.19 5.87 -104.98 -0.62 -2.81 16 21 C 0.53 7.18 8.27 34.61 0.29 7.46 16 22 O -0.52 -8.19 17.13 -19.25 -0.33 -8.52 16 23 O -0.51 -5.07 12.68 -40.50 -0.51 -5.59 16 24 C -0.05 -0.73 9.60 -39.17 -0.38 -1.11 16 25 C -0.13 -2.17 9.68 -39.64 -0.38 -2.56 16 26 H 0.28 5.78 8.31 -40.82 -0.34 5.44 16 27 H 0.10 2.02 8.13 -51.93 -0.42 1.60 16 28 H 0.11 2.25 5.12 -51.93 -0.27 1.98 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 32 H 0.13 2.54 8.08 -51.92 -0.42 2.12 16 33 H 0.13 2.20 8.08 -51.92 -0.42 1.78 16 34 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.14 1.58 7.61 -52.48 -0.40 1.18 16 36 H 0.41 2.06 9.11 45.56 0.42 2.47 16 37 H 0.14 1.91 7.65 -52.49 -0.40 1.50 16 38 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -29.96 344.87 -9.49 -39.45 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -3.57 Total: 12.53 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -3.21 Total: -25.23 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.49 Total: -35.12 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -2.82 Total: -64.64 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.00 Total: 12.27 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.58 Total: 55.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.96 -9.49 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.403 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds