Wall clock time and date at job start Tue Mar 31 2020 13:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99507 * 2 1 4 4 H 1.48495 * 109.47389 * 240.00018 * 3 2 1 5 5 H 1.48500 * 109.47541 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46884 * 120.00457 * 3 2 1 7 7 C 1.38805 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00230 * 165.42566 * 7 2 1 9 9 N 1.36937 * 119.99965 * 345.42630 * 7 2 1 10 10 C 1.46503 * 119.99719 * 307.67045 * 9 7 2 11 11 C 1.52997 * 117.49931 * 1.76028 * 10 9 7 12 12 C 1.52997 * 60.00163 * 252.50854 * 11 10 9 13 13 S 1.65599 * 120.00246 * 127.67598 * 9 7 2 14 14 O 1.42101 * 104.27560 * 153.92469 * 13 9 7 15 15 O 1.42099 * 104.27531 * 26.06833 * 13 9 7 16 16 C 1.81397 * 104.44910 * 269.99795 * 13 9 7 17 17 C 1.50702 * 109.47215 * 179.97438 * 16 13 9 18 18 C 1.38363 * 119.84886 * 90.00127 * 17 16 13 19 19 C 1.37939 * 120.14979 * 180.27926 * 18 17 16 20 20 C 1.39623 * 119.84869 * 359.48897 * 19 18 17 21 21 C 1.47728 * 120.15175 * 180.23728 * 20 19 18 22 22 O 1.21474 * 120.00251 * 180.27592 * 21 20 19 23 23 O 1.34705 * 120.00014 * 0.26969 * 21 20 19 24 24 C 1.39637 * 119.70092 * 0.50719 * 20 19 18 25 25 C 1.37940 * 119.84300 * 359.74650 * 24 20 19 26 26 H 0.96998 * 120.00444 * 357.80949 * 1 2 3 27 27 H 1.09007 * 115.54677 * 147.46292 * 10 9 7 28 28 H 1.09004 * 117.50004 * 359.97438 * 11 10 9 29 29 H 1.08997 * 117.49958 * 145.01335 * 11 10 9 30 30 H 1.09000 * 117.49907 * 252.51358 * 12 11 10 31 31 H 1.08999 * 117.52377 * 107.47948 * 12 11 10 32 32 H 1.09007 * 109.46881 * 59.99847 * 16 13 9 33 33 H 1.09005 * 109.47102 * 300.00369 * 16 13 9 34 34 H 1.07999 * 119.92272 * 359.97438 * 18 17 16 35 35 H 1.08003 * 120.07910 * 179.72114 * 19 18 17 36 36 H 0.96702 * 117.00098 * 180.02562 * 23 21 20 37 37 H 1.07998 * 120.07483 * 179.72421 * 24 20 19 38 38 H 1.08000 * 119.92553 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0642 -1.2170 -0.2359 9 7 1.3587 -2.3690 0.2973 10 6 0.5683 -2.4735 1.5264 11 6 0.4763 -1.2313 2.4149 12 6 1.3220 -2.4271 2.8571 13 16 1.4643 -3.6623 -0.7316 14 8 1.2503 -4.7924 0.1029 15 8 2.7005 -3.4733 -1.4062 16 6 0.0744 -3.4442 -1.8767 17 6 0.0639 -4.5733 -2.8748 18 6 -0.6443 -5.7296 -2.5991 19 6 -0.6534 -6.7692 -3.5056 20 6 0.0453 -6.6485 -4.7084 21 6 0.0358 -7.7557 -5.6864 22 8 0.6488 -7.6498 -6.7298 23 8 -0.6526 -8.8827 -5.4211 24 6 0.7579 -5.4788 -4.9802 25 6 0.7628 -4.4491 -4.0625 26 1 -0.4851 0.8394 0.0321 27 1 -0.3098 -3.1166 1.4674 28 1 1.0042 -0.3364 2.0851 29 1 -0.4625 -1.0568 2.9404 30 1 0.9395 -3.0395 3.6737 31 1 2.4059 -2.3194 2.8182 32 1 0.1825 -2.4956 -2.4028 33 1 -0.8610 -3.4447 -1.3170 34 1 -1.1871 -5.8202 -1.6698 35 1 -1.2029 -7.6730 -3.2873 36 1 -0.6289 -9.5796 -6.0911 37 1 1.3042 -5.3808 -5.9067 38 1 1.3139 -3.5440 -4.2712 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:47 Heat of formation + Delta-G solvation = -122.212539 kcal Electronic energy + Delta-G solvation = -25333.326302 eV Core-core repulsion = 21461.281628 eV Total energy + Delta-G solvation = -3872.044675 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51058 -39.94095 -38.96500 -37.64790 -37.15216 -36.47440 -34.76941 -34.16675 -32.85842 -32.17450 -29.05375 -26.82828 -24.69590 -23.82987 -22.93289 -22.47883 -22.00511 -20.24066 -19.22298 -18.74919 -18.56459 -18.40111 -17.38633 -16.84997 -16.71648 -16.57863 -16.29764 -16.08820 -15.56781 -15.46252 -15.19300 -14.63719 -14.30270 -14.02952 -13.93132 -13.66330 -13.45475 -13.20638 -12.95269 -12.85310 -12.74660 -12.65092 -12.64354 -12.54782 -12.16868 -12.06580 -11.97807 -11.88963 -11.73045 -11.50446 -10.89997 -10.51917 -10.16694 -9.95770 -9.30553 -8.39468 -6.20338 -0.68893 -0.08317 0.21551 1.40196 1.50812 1.52478 1.58711 1.97018 2.17088 2.47011 2.61031 2.85543 3.17752 3.42334 3.50325 3.60444 3.73674 3.85638 4.02038 4.21154 4.27945 4.30789 4.42944 4.50016 4.51068 4.57651 4.75685 4.85628 4.90515 5.02658 5.06789 5.18576 5.32227 5.35894 5.41160 5.50201 5.64699 5.67532 5.83309 6.44569 6.80104 6.91297 7.35566 8.56994 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.003526 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.493009 B = 7939.832225 C = 8573.848937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.284 4.284 8 H 0.081 0.919 9 N -0.792 5.792 10 C 0.091 3.909 11 C -0.141 4.141 12 C -0.200 4.200 13 S 2.493 3.507 14 O -1.015 7.015 15 O -1.009 7.009 16 C -0.594 4.594 17 C -0.050 4.050 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.152 4.152 21 C 0.541 3.459 22 O -0.545 6.545 23 O -0.499 6.499 24 C -0.053 4.053 25 C -0.144 4.144 26 H 0.284 0.716 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.435 0.565 37 H 0.149 0.851 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 -6.629 -3.225 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.431 4.431 8 H 0.099 0.901 9 N -0.614 5.614 10 C -0.017 4.017 11 C -0.180 4.180 12 C -0.240 4.240 13 S 2.599 3.401 14 O -1.005 7.005 15 O -0.999 6.999 16 C -0.716 4.716 17 C -0.052 4.052 18 C -0.160 4.160 19 C -0.064 4.064 20 C -0.154 4.154 21 C 0.387 3.613 22 O -0.438 6.438 23 O -0.313 6.313 24 C -0.071 4.071 25 C -0.162 4.162 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.189 0.811 36 H 0.298 0.702 37 H 0.167 0.833 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.527 -7.148 -3.317 9.625 hybrid contribution -0.065 0.832 -0.915 1.239 sum -5.593 -6.316 -4.232 9.438 Atomic orbital electron populations 1.70078 1.06916 1.29953 1.38881 1.26362 0.96014 1.02545 0.93434 0.85443 0.78847 0.77395 0.79694 1.19536 1.19265 1.18794 1.19499 0.93108 0.83990 1.46515 0.90111 1.52618 1.57169 1.27980 1.23627 1.21183 0.96074 1.02804 0.81649 1.23063 1.00802 0.93060 1.01104 1.23432 0.98845 1.03356 0.98363 1.12195 0.77602 0.75655 0.74620 1.93324 1.87579 1.54351 1.65232 1.93328 1.43092 1.86408 1.77071 1.29895 1.24144 1.03648 1.13932 1.19822 0.96299 0.94664 0.94429 1.21446 1.00354 0.92821 1.01381 1.21704 0.94985 0.99017 0.90705 1.19241 1.05669 0.94173 0.96268 1.20634 0.74557 0.81987 0.84112 1.90872 1.43504 1.81822 1.27589 1.84507 1.67004 1.26739 1.53039 1.21367 0.95350 0.90955 0.99420 1.21301 1.00704 1.00632 0.93604 0.90626 0.86867 0.88899 0.88435 0.87208 0.90362 0.85146 0.84184 0.83108 0.81124 0.70202 0.83282 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -36.03 11.64 21.65 0.25 -35.78 16 2 C 0.03 1.35 3.14 84.86 0.27 1.62 16 3 Si 0.96 35.38 29.44 68.60 2.02 37.40 16 4 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.28 -13.66 8.21 84.03 0.69 -12.97 16 8 H 0.08 4.09 7.69 -2.91 -0.02 4.07 16 9 N -0.79 -36.67 2.94 -322.93 -0.95 -37.62 16 10 C 0.09 3.75 5.41 44.99 0.24 4.00 16 11 C -0.14 -5.32 8.36 30.59 0.26 -5.06 16 12 C -0.20 -7.36 10.38 30.59 0.32 -7.04 16 13 S 2.49 114.74 5.37 -56.49 -0.30 114.44 16 14 O -1.02 -49.13 17.26 -127.65 -2.20 -51.33 16 15 O -1.01 -52.92 17.11 -127.65 -2.18 -55.10 16 16 C -0.59 -22.53 6.30 71.24 0.45 -22.08 16 17 C -0.05 -1.75 5.15 -19.80 -0.10 -1.86 16 18 C -0.14 -4.22 9.68 22.23 0.22 -4.01 16 19 C -0.05 -1.18 9.62 22.53 0.22 -0.96 16 20 C -0.15 -4.15 5.87 -20.10 -0.12 -4.27 16 21 C 0.54 13.21 8.27 70.33 0.58 13.79 16 22 O -0.55 -16.16 17.13 19.92 0.34 -15.82 16 23 O -0.50 -8.02 12.68 -56.15 -0.71 -8.73 16 24 C -0.05 -1.57 9.60 22.54 0.22 -1.35 16 25 C -0.14 -4.78 9.68 22.23 0.22 -4.57 16 26 H 0.28 11.55 8.31 -92.71 -0.77 10.78 16 27 H 0.11 4.34 8.13 -2.38 -0.02 4.32 16 28 H 0.09 3.81 5.12 -2.38 -0.01 3.80 16 29 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.13 5.03 8.08 -2.39 -0.02 5.01 16 33 H 0.14 4.82 8.08 -2.39 -0.02 4.80 16 34 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.17 3.18 7.61 -2.91 -0.02 3.16 16 36 H 0.44 2.68 9.11 -74.06 -0.67 2.00 16 37 H 0.15 4.01 7.65 -2.91 -0.02 3.99 16 38 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -64.41 344.87 0.14 -64.27 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.43 Total: 33.03 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 3.45 Total: -44.76 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -0.70 Total: -73.40 kcal Atomic # 8 Polarization: -126.22 SS G_CDS: -4.76 Total: -130.98 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.02 Total: 37.40 kcal Atomic # 16 Polarization: 114.74 SS G_CDS: -0.30 Total: 114.44 kcal Total: -64.41 0.14 -64.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.939 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds