Wall clock time and date at job start Tue Mar 31 2020 13:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86795 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47411 * 270.00163 * 3 2 1 5 5 H 1.48500 * 109.47084 * 30.00316 * 3 2 1 6 6 H 1.48503 * 109.47156 * 149.99789 * 3 2 1 7 7 C 1.38963 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 160.24810 * 7 2 1 9 9 N 1.36933 * 120.00020 * 340.24313 * 7 2 1 10 10 C 1.46500 * 120.00358 * 318.55904 * 9 7 2 11 11 C 1.52996 * 109.47347 * 266.24199 * 10 9 7 12 12 C 1.50700 * 109.47183 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99848 * 359.97438 * 12 11 10 14 14 O 1.34234 * 120.00020 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99877 * 138.56694 * 9 7 2 16 16 O 1.21845 * 119.99792 * 183.40223 * 15 9 7 17 17 C 1.41157 * 120.00051 * 3.39669 * 15 9 7 18 18 C 1.35223 * 120.00001 * 181.99164 * 17 15 9 19 19 S 1.76203 * 120.00110 * 179.97438 * 18 17 15 20 20 C 1.80992 * 100.00171 * 180.02562 * 19 18 17 21 21 C 1.50695 * 109.47115 * 180.02562 * 20 19 18 22 22 C 1.34521 * 125.78873 * 89.71780 * 21 20 19 23 23 C 1.41389 * 106.83962 * 179.88755 * 22 21 20 24 24 C 1.34518 * 106.83732 * 0.37121 * 23 22 21 25 25 O 1.34302 * 108.42326 * 359.76984 * 24 23 22 26 26 H 0.96997 * 119.99693 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46887 * 26.23748 * 10 9 7 28 28 H 1.08997 * 109.47169 * 146.23858 * 10 9 7 29 29 H 1.08999 * 109.47133 * 299.99372 * 11 10 9 30 30 H 1.09004 * 109.47557 * 59.99485 * 11 10 9 31 31 H 0.96694 * 116.99994 * 179.97438 * 14 12 11 32 32 H 1.07996 * 120.00106 * 1.98847 * 17 15 9 33 33 H 1.07999 * 120.00293 * 0.02562 * 18 17 15 34 34 H 1.09001 * 109.47030 * 60.00081 * 20 19 18 35 35 H 1.09007 * 109.47092 * 300.00031 * 20 19 18 36 36 H 1.07991 * 126.58242 * 0.02562 * 22 21 20 37 37 H 1.07998 * 126.58125 * 180.15763 * 23 22 21 38 38 H 1.08000 * 125.78713 * 179.75018 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5460 1.4401 0.7001 7 6 2.0091 -1.2035 -0.0005 8 1 3.0414 -1.2309 -0.3166 9 7 1.3848 -2.3546 0.3998 10 6 0.4972 -2.3394 1.5653 11 6 1.2881 -2.7349 2.8138 12 6 0.3752 -2.7186 4.0128 13 8 -0.7884 -2.4207 3.8821 14 8 0.8549 -3.0350 5.2259 15 6 1.5869 -3.5017 -0.2783 16 8 0.9840 -4.5116 0.0396 17 6 2.4971 -3.5330 -1.3568 18 6 2.6700 -4.6734 -2.0626 19 16 3.8056 -4.7123 -3.4093 20 6 3.6076 -6.4320 -3.9379 21 6 4.5103 -6.7032 -5.1137 22 6 5.7804 -7.1411 -5.0457 23 6 6.2445 -7.2597 -6.3760 24 6 5.2329 -6.8793 -7.1769 25 8 4.1851 -6.5435 -6.4069 26 1 -0.4849 0.8400 0.0004 27 1 0.0875 -1.3379 1.6968 28 1 -0.3168 -3.0477 1.4113 29 1 1.6978 -3.7363 2.6823 30 1 2.1022 -2.0266 2.9678 31 1 0.2315 -3.0101 5.9646 32 1 3.0553 -2.6462 -1.6182 33 1 2.1115 -5.5601 -1.8015 34 1 2.5712 -6.6061 -4.2273 35 1 3.8721 -7.0975 -3.1161 36 1 6.3379 -7.3619 -4.1476 37 1 7.2243 -7.5888 -6.6889 38 1 5.2590 -6.8489 -8.2562 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:32 Heat of formation + Delta-G solvation = -85.955586 kcal Electronic energy + Delta-G solvation = -23708.144880 eV Core-core repulsion = 19837.672425 eV Total energy + Delta-G solvation = -3870.472455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.74835 -39.87333 -38.79771 -35.86045 -35.09127 -33.39905 -32.42871 -32.15715 -31.88422 -30.45416 -26.98447 -25.29828 -24.86318 -22.26193 -21.96000 -20.82251 -20.23197 -19.07140 -17.83879 -17.59890 -17.05278 -16.69237 -16.41006 -15.98320 -15.68140 -15.34903 -14.90228 -14.63010 -14.46171 -14.10913 -13.76476 -13.50120 -13.03840 -12.98981 -12.80529 -12.68600 -12.50361 -12.16681 -12.08796 -11.72799 -11.33462 -11.19309 -11.12020 -10.81102 -10.49380 -10.21552 -10.19368 -10.10416 -10.09151 -9.99766 -9.26968 -8.71229 -8.58144 -7.67271 -7.21740 -6.49005 -4.22032 1.07195 1.79253 1.97937 2.44828 2.59119 2.63498 2.77552 3.08273 3.17361 3.20129 3.41008 4.01812 4.34055 4.36189 4.70783 4.81376 4.88902 4.94511 4.99180 5.20097 5.55734 5.58021 5.67204 5.70237 5.75532 5.85013 5.97472 6.26274 6.27354 6.36326 6.59247 6.71865 6.80175 6.90757 6.94061 7.21354 7.34515 7.80962 8.21485 8.27895 8.94889 9.33854 9.79064 10.53143 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.002684 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.921643 B =10430.233386 C =11824.960691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.049 3.951 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.423 5.423 10 C 0.131 3.869 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.524 6.524 15 C 0.501 3.499 16 O -0.611 6.611 17 C -0.123 4.123 18 C -0.137 4.137 19 S -0.104 6.104 20 C -0.036 4.036 21 C 0.000 4.000 22 C -0.188 4.188 23 C -0.216 4.216 24 C -0.034 4.034 25 O -0.170 6.170 26 H 0.273 0.727 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.401 0.599 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.979 -9.330 -5.386 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.160 4.160 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.111 0.889 9 N -0.139 5.139 10 C 0.006 3.994 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.291 3.709 16 O -0.500 6.500 17 C -0.155 4.155 18 C -0.271 4.271 19 S 0.138 5.862 20 C -0.183 4.183 21 C -0.051 4.051 22 C -0.210 4.210 23 C -0.235 4.235 24 C -0.103 4.103 25 O -0.066 6.066 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.259 0.741 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.866 -8.662 -6.172 14.507 hybrid contribution -0.623 0.009 1.007 1.184 sum 9.243 -8.653 -5.165 13.674 Atomic orbital electron populations 1.69977 1.06355 1.28343 1.43395 1.25500 0.95105 1.00158 0.95209 0.86154 0.79795 0.81291 0.78850 1.19943 1.20596 1.19045 1.19392 0.96191 0.84655 1.47880 0.88882 1.43319 1.40685 1.07528 1.22362 1.21084 0.91633 1.04629 0.82025 1.21858 0.99031 1.05119 0.90414 1.23754 0.88003 0.71871 0.83824 1.90708 1.19233 1.44413 1.85795 1.84588 1.47739 1.82392 1.18873 1.16977 0.85227 0.84788 0.83868 1.90684 1.53272 1.35013 1.70992 1.21770 0.99464 0.97445 0.96786 1.25398 1.01255 1.02329 0.98165 1.86004 1.52480 1.11727 1.35984 1.21913 1.02018 0.98955 0.95433 1.21416 0.95595 1.05458 0.82664 1.21641 0.94532 1.06074 0.98733 1.21850 1.01072 1.07734 0.92842 1.24093 0.85640 1.03405 0.97145 1.84037 1.38963 1.67276 1.16329 0.91634 0.87476 0.91333 0.88285 0.87637 0.74085 0.84948 0.84283 0.87579 0.86476 0.83041 0.83250 0.77927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.20 11.71 55.50 0.65 -21.55 16 2 C 0.05 1.20 4.92 -17.45 -0.09 1.11 16 3 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 7 C -0.35 -8.58 8.34 -15.00 -0.13 -8.71 16 8 H 0.09 2.13 6.79 -52.49 -0.36 1.78 16 9 N -0.42 -10.32 2.49 -118.19 -0.29 -10.61 16 10 C 0.13 3.08 4.23 -4.04 -0.02 3.06 16 11 C -0.13 -2.41 6.11 -27.88 -0.17 -2.58 16 12 C 0.48 8.71 8.33 36.01 0.30 9.01 16 13 O -0.51 -10.83 16.74 -18.75 -0.31 -11.14 16 14 O -0.52 -7.31 13.42 -39.27 -0.53 -7.84 16 15 C 0.50 12.03 7.37 -15.15 -0.11 11.92 16 16 O -0.61 -15.77 15.72 5.06 0.08 -15.69 16 17 C -0.12 -2.55 8.86 -39.55 -0.35 -2.90 16 18 C -0.14 -2.43 9.53 29.66 0.28 -2.14 16 19 S -0.10 -1.54 22.02 -107.50 -2.37 -3.91 16 20 C -0.04 -0.42 6.20 36.00 0.22 -0.19 16 21 C 0.00 0.00 6.58 -35.62 -0.23 -0.24 16 22 C -0.19 -1.97 10.81 -39.70 -0.43 -2.40 16 23 C -0.22 -1.97 10.91 -39.70 -0.43 -2.40 16 24 C -0.03 -0.31 12.09 29.42 0.36 0.05 16 25 O -0.17 -2.04 10.65 5.72 0.06 -1.98 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.11 2.73 5.77 -51.93 -0.30 2.43 16 28 H 0.07 1.74 7.45 -51.93 -0.39 1.36 16 29 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 30 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 31 H 0.40 3.66 9.10 45.56 0.41 4.07 16 32 H 0.13 2.68 6.38 -52.49 -0.34 2.35 16 33 H 0.14 2.45 7.42 -52.49 -0.39 2.06 16 34 H 0.11 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.12 1.13 8.14 -51.91 -0.42 0.71 16 36 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -32.03 355.91 -6.62 -38.65 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -3.45 Total: 11.40 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.80 Total: 3.58 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.36 Total: -32.16 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.70 Total: -36.65 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.37 Total: -3.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.03 -6.62 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.306 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds