Wall clock time and date at job start Tue Mar 31 2020 13:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48505 * 109.46881 * 239.99687 * 3 2 1 5 5 H 1.48497 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47084 * 120.00251 * 3 2 1 7 7 C 1.38960 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00489 * 183.51600 * 7 2 1 9 9 N 1.36943 * 119.99700 * 3.51281 * 7 2 1 10 10 C 1.46499 * 119.99997 * 314.06118 * 9 7 2 11 11 C 1.52997 * 109.47111 * 274.41317 * 10 9 7 12 12 C 1.50700 * 109.47254 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99883 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00312 * 180.02562 * 12 11 10 15 15 C 1.34777 * 119.99513 * 134.05763 * 9 7 2 16 16 O 1.21844 * 119.99475 * 184.69983 * 15 9 7 17 17 C 1.41158 * 120.00408 * 4.70394 * 15 9 7 18 18 C 1.35216 * 120.00079 * 175.38030 * 17 15 9 19 19 S 1.76197 * 120.00249 * 0.02562 * 18 17 15 20 20 C 1.80998 * 100.00461 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47490 * 180.02562 * 20 19 18 22 22 C 1.34503 * 125.79355 * 89.99665 * 21 20 19 23 23 C 1.41384 * 106.84498 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.83611 * 359.97438 * 23 22 21 25 25 O 1.34298 * 108.42207 * 0.02562 * 24 23 22 26 26 H 0.96999 * 120.00335 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47390 * 34.41398 * 10 9 7 28 28 H 1.09007 * 109.46914 * 154.41518 * 10 9 7 29 29 H 1.09005 * 109.47138 * 299.99864 * 11 10 9 30 30 H 1.08998 * 109.47541 * 59.99987 * 11 10 9 31 31 H 0.96699 * 117.00509 * 180.02562 * 14 12 11 32 32 H 1.07998 * 119.99620 * 355.38061 * 17 15 9 33 33 H 1.08009 * 120.00222 * 179.97438 * 18 17 15 34 34 H 1.09002 * 109.47283 * 59.99158 * 20 19 18 35 35 H 1.09004 * 109.46596 * 300.00283 * 20 19 18 36 36 H 1.08002 * 126.58079 * 0.05635 * 22 21 20 37 37 H 1.07998 * 126.57975 * 180.02562 * 23 22 21 38 38 H 1.07998 * 125.78661 * 180.26227 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0092 -1.2034 -0.0005 8 1 3.0877 -1.2043 0.0568 9 7 1.3265 -2.3882 -0.0737 10 6 0.1495 -2.6087 0.7703 11 6 0.5933 -3.1326 2.1375 12 6 -0.6174 -3.3600 3.0055 13 8 -1.7220 -3.1266 2.5749 14 8 -0.4688 -3.8210 4.2574 15 6 1.7373 -3.3513 -0.9223 16 8 1.0819 -4.3705 -1.0504 17 6 2.9269 -3.1794 -1.6626 18 6 3.3887 -4.1827 -2.4427 19 16 2.5053 -5.7044 -2.5358 20 6 3.5671 -6.6145 -3.6848 21 6 2.9911 -7.9869 -3.9214 22 6 2.1128 -8.3159 -4.8854 23 6 1.8444 -9.6965 -4.7412 24 6 2.5753 -10.1287 -3.6980 25 8 3.2677 -9.0888 -3.2052 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3873 -1.6688 0.8981 28 1 -0.5057 -3.3397 0.2963 29 1 1.1300 -4.0727 2.0097 30 1 1.2485 -2.4017 2.6115 31 1 -1.2746 -3.9514 4.7758 32 1 3.4681 -2.2466 -1.6058 33 1 4.2987 -4.0510 -3.0094 34 1 4.5665 -6.7077 -3.2599 35 1 3.6235 -6.0764 -4.6311 36 1 1.6933 -7.6528 -5.6276 37 1 1.1806 -10.2904 -5.3521 38 1 2.6037 -11.1410 -3.3230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:35 Heat of formation + Delta-G solvation = -80.431385 kcal Electronic energy + Delta-G solvation = -24226.610397 eV Core-core repulsion = 20356.377489 eV Total energy + Delta-G solvation = -3870.232908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.52212 -39.78385 -38.84876 -35.79442 -35.14062 -33.15061 -32.37213 -31.94062 -31.75170 -30.40348 -26.71222 -25.33217 -24.70310 -22.12819 -21.74322 -20.63836 -20.08182 -19.17320 -17.76561 -17.53753 -17.14575 -16.41504 -16.22828 -15.89914 -15.47463 -15.10894 -14.78940 -14.59546 -14.16110 -13.91808 -13.66670 -13.63751 -12.85548 -12.79686 -12.70745 -12.59905 -12.39431 -12.17420 -11.89653 -11.57741 -11.25010 -11.09893 -11.06774 -10.73922 -10.47110 -10.20377 -10.04902 -10.00436 -9.91079 -9.82115 -9.16312 -8.62709 -8.04252 -7.69232 -6.91297 -6.35563 -4.30354 1.43714 1.80138 2.26327 2.73018 2.74531 2.96791 3.02595 3.08599 3.14337 3.15754 3.49484 3.99459 4.36932 4.62599 4.87439 4.92752 4.94093 5.02547 5.22393 5.44310 5.56161 5.67894 5.79640 5.87734 5.92361 6.08002 6.09015 6.32165 6.40760 6.48744 6.62834 6.69968 6.88239 7.01051 7.13281 7.22769 7.60957 7.89977 8.27549 8.36574 8.94824 9.33496 9.78403 10.55797 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.003317 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.530210 B = 8438.150828 C =10183.927149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.048 3.952 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.344 4.344 8 H 0.091 0.909 9 N -0.427 5.427 10 C 0.107 3.893 11 C -0.120 4.120 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.526 6.526 15 C 0.491 3.509 16 O -0.572 6.572 17 C -0.149 4.149 18 C -0.154 4.154 19 S 0.040 5.960 20 C -0.118 4.118 21 C 0.018 3.982 22 C -0.201 4.201 23 C -0.213 4.213 24 C -0.044 4.044 25 O -0.173 6.173 26 H 0.274 0.726 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.400 0.600 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -10.252 -2.951 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.159 4.159 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.108 0.892 9 N -0.144 5.144 10 C -0.017 4.017 11 C -0.159 4.159 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.284 3.716 16 O -0.462 6.462 17 C -0.183 4.183 18 C -0.289 4.289 19 S 0.282 5.718 20 C -0.263 4.263 21 C -0.033 4.033 22 C -0.223 4.223 23 C -0.232 4.232 24 C -0.113 4.113 25 O -0.070 6.070 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.258 0.742 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.164 -10.868 -2.627 12.316 hybrid contribution 1.032 1.325 -0.362 1.718 sum 6.196 -9.543 -2.989 11.764 Atomic orbital electron populations 1.69549 1.06162 1.27989 1.45931 1.25631 0.95417 0.99982 0.94880 0.86079 0.79155 0.80806 0.79145 1.19533 1.20751 1.19691 1.19375 0.91889 0.82266 1.53690 0.89162 1.43212 1.25966 1.13376 1.31844 1.21638 0.89264 1.04888 0.85902 1.21813 0.93781 1.03806 0.96514 1.23796 0.91835 0.72074 0.79768 1.90701 1.28257 1.47701 1.73403 1.84592 1.42686 1.78894 1.27562 1.17280 0.87200 0.85230 0.81926 1.90488 1.57561 1.30059 1.68064 1.21851 0.98335 0.99341 0.98800 1.25785 1.02498 0.98183 1.02451 1.88120 1.26582 1.05914 1.51162 1.22711 1.04434 0.92334 1.06856 1.21472 1.00919 0.87148 0.93790 1.21571 1.02056 0.96246 1.02446 1.21813 1.04612 0.95605 1.01179 1.23991 0.97376 0.92157 0.97770 1.84012 1.56240 1.16552 1.50149 0.91498 0.84639 0.91631 0.89039 0.87779 0.74217 0.83993 0.84972 0.88910 0.87695 0.83326 0.83489 0.78183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.13 10.74 55.50 0.60 -21.53 16 2 C 0.05 1.14 5.40 -17.45 -0.09 1.05 16 3 Si 0.92 18.44 29.55 -169.99 -5.02 13.42 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.34 -8.16 8.19 -15.00 -0.12 -8.28 16 8 H 0.09 1.99 6.98 -52.49 -0.37 1.62 16 9 N -0.43 -10.33 2.52 -118.19 -0.30 -10.63 16 10 C 0.11 2.56 4.44 -4.04 -0.02 2.54 16 11 C -0.12 -2.39 6.12 -27.88 -0.17 -2.56 16 12 C 0.48 9.06 8.33 36.01 0.30 9.36 16 13 O -0.51 -11.18 16.74 -18.76 -0.31 -11.49 16 14 O -0.53 -7.70 13.42 -39.25 -0.53 -8.23 16 15 C 0.49 11.55 7.37 -15.15 -0.11 11.44 16 16 O -0.57 -14.43 12.85 5.06 0.07 -14.36 16 17 C -0.15 -2.94 9.17 -39.55 -0.36 -3.30 16 18 C -0.15 -2.58 10.09 29.66 0.30 -2.28 16 19 S 0.04 0.71 18.60 -107.50 -2.00 -1.29 16 20 C -0.12 -1.57 6.20 36.01 0.22 -1.35 16 21 C 0.02 0.25 6.58 -35.63 -0.23 0.02 16 22 C -0.20 -2.63 10.81 -39.71 -0.43 -3.06 16 23 C -0.21 -2.44 10.91 -39.70 -0.43 -2.87 16 24 C -0.04 -0.50 12.09 29.42 0.36 -0.14 16 25 O -0.17 -2.45 10.65 5.72 0.06 -2.38 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.14 3.55 5.11 -51.93 -0.27 3.28 16 28 H 0.07 1.69 7.19 -51.92 -0.37 1.31 16 29 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 30 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 31 H 0.40 3.92 9.10 45.56 0.41 4.33 16 32 H 0.14 2.61 6.52 -52.49 -0.34 2.26 16 33 H 0.13 1.70 8.03 -52.48 -0.42 1.28 16 34 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.10 1.19 8.14 -51.91 -0.42 0.76 16 36 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.20 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -31.44 350.08 -6.41 -37.85 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.45 Total: 12.82 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.80 Total: 0.56 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.30 Total: -32.16 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.71 Total: -36.47 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.00 Total: -1.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.44 -6.41 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.584 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds