Wall clock time and date at job start Tue Mar 31 2020 13:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48505 * 109.46881 * 239.99687 * 3 2 1 5 5 H 1.48497 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47084 * 120.00251 * 3 2 1 7 7 C 1.38960 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00489 * 183.51600 * 7 2 1 9 9 N 1.36943 * 119.99700 * 3.51281 * 7 2 1 10 10 C 1.46499 * 119.99997 * 314.06118 * 9 7 2 11 11 C 1.52997 * 109.47111 * 274.41317 * 10 9 7 12 12 C 1.50700 * 109.47254 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99883 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00312 * 180.02562 * 12 11 10 15 15 C 1.34777 * 119.99513 * 134.05763 * 9 7 2 16 16 O 1.21844 * 119.99475 * 184.69983 * 15 9 7 17 17 C 1.41158 * 120.00408 * 4.70394 * 15 9 7 18 18 C 1.35216 * 120.00079 * 175.38030 * 17 15 9 19 19 S 1.76197 * 120.00249 * 0.02562 * 18 17 15 20 20 C 1.80998 * 100.00461 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47490 * 180.02562 * 20 19 18 22 22 C 1.34503 * 125.79355 * 89.99665 * 21 20 19 23 23 C 1.41384 * 106.84498 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.83611 * 359.97438 * 23 22 21 25 25 O 1.34298 * 108.42207 * 0.02562 * 24 23 22 26 26 H 0.96999 * 120.00335 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47390 * 34.41398 * 10 9 7 28 28 H 1.09007 * 109.46914 * 154.41518 * 10 9 7 29 29 H 1.09005 * 109.47138 * 299.99864 * 11 10 9 30 30 H 1.08998 * 109.47541 * 59.99987 * 11 10 9 31 31 H 0.96699 * 117.00509 * 180.02562 * 14 12 11 32 32 H 1.07998 * 119.99620 * 355.38061 * 17 15 9 33 33 H 1.08009 * 120.00222 * 179.97438 * 18 17 15 34 34 H 1.09002 * 109.47283 * 59.99158 * 20 19 18 35 35 H 1.09004 * 109.46596 * 300.00283 * 20 19 18 36 36 H 1.08002 * 126.58079 * 0.05635 * 22 21 20 37 37 H 1.07998 * 126.57975 * 180.02562 * 23 22 21 38 38 H 1.07998 * 125.78661 * 180.26227 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0092 -1.2034 -0.0005 8 1 3.0877 -1.2043 0.0568 9 7 1.3265 -2.3882 -0.0737 10 6 0.1495 -2.6087 0.7703 11 6 0.5933 -3.1326 2.1375 12 6 -0.6174 -3.3600 3.0055 13 8 -1.7220 -3.1266 2.5749 14 8 -0.4688 -3.8210 4.2574 15 6 1.7373 -3.3513 -0.9223 16 8 1.0819 -4.3705 -1.0504 17 6 2.9269 -3.1794 -1.6626 18 6 3.3887 -4.1827 -2.4427 19 16 2.5053 -5.7044 -2.5358 20 6 3.5671 -6.6145 -3.6848 21 6 2.9911 -7.9869 -3.9214 22 6 2.1128 -8.3159 -4.8854 23 6 1.8444 -9.6965 -4.7412 24 6 2.5753 -10.1287 -3.6980 25 8 3.2677 -9.0888 -3.2052 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3873 -1.6688 0.8981 28 1 -0.5057 -3.3397 0.2963 29 1 1.1300 -4.0727 2.0097 30 1 1.2485 -2.4017 2.6115 31 1 -1.2746 -3.9514 4.7758 32 1 3.4681 -2.2466 -1.6058 33 1 4.2987 -4.0510 -3.0094 34 1 4.5665 -6.7077 -3.2599 35 1 3.6235 -6.0764 -4.6311 36 1 1.6933 -7.6528 -5.6276 37 1 1.1806 -10.2904 -5.3521 38 1 2.6037 -11.1410 -3.3230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:34 Heat of formation + Delta-G solvation = -100.108505 kcal Electronic energy + Delta-G solvation = -24227.463660 eV Core-core repulsion = 20356.377489 eV Total energy + Delta-G solvation = -3871.086172 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.47339 -41.32878 -40.54978 -37.28084 -36.85108 -34.13254 -33.97294 -33.60158 -32.80725 -32.07188 -27.72868 -27.11736 -26.33711 -23.63710 -22.68524 -21.86730 -21.48368 -20.82927 -19.26862 -19.00093 -18.29285 -17.96765 -17.54203 -17.30708 -17.00532 -16.63198 -16.34159 -15.64924 -15.62461 -15.54643 -15.16847 -14.79241 -14.30302 -14.21098 -13.94914 -13.74673 -13.70309 -13.57397 -13.22373 -13.03632 -12.80242 -12.75667 -12.55200 -12.36922 -12.08328 -11.81635 -11.69011 -11.58816 -11.27358 -10.92374 -10.83475 -10.04494 -9.49664 -9.22224 -8.40365 -8.12719 -6.15703 0.30619 0.33117 1.19610 1.20749 1.51582 1.53678 1.61211 1.63103 1.87564 2.07088 2.09525 2.34503 2.65914 3.15313 3.25252 3.69731 4.05275 4.06489 4.13323 4.16544 4.26741 4.32833 4.46693 4.52730 4.76030 4.83492 4.91468 5.01047 5.03780 5.16190 5.19458 5.33207 5.38697 5.57132 5.59689 5.73271 6.11378 6.18634 6.45520 7.01782 7.13964 7.56756 8.01740 8.77234 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.003317 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.530210 B = 8438.150828 C =10183.927149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.349 4.349 8 H 0.107 0.893 9 N -0.445 5.445 10 C 0.112 3.888 11 C -0.111 4.111 12 C 0.494 3.506 13 O -0.549 6.549 14 O -0.508 6.508 15 C 0.482 3.518 16 O -0.603 6.603 17 C -0.189 4.189 18 C -0.108 4.108 19 S -0.033 6.033 20 C -0.092 4.092 21 C -0.015 4.015 22 C -0.207 4.207 23 C -0.227 4.227 24 C -0.039 4.039 25 O -0.193 6.193 26 H 0.270 0.730 27 H 0.113 0.887 28 H 0.032 0.968 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.426 0.574 32 H 0.155 0.845 33 H 0.180 0.820 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 -11.195 -3.493 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.202 4.202 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.476 4.476 8 H 0.125 0.875 9 N -0.162 5.162 10 C -0.012 4.012 11 C -0.150 4.150 12 C 0.338 3.662 13 O -0.440 6.440 14 O -0.321 6.321 15 C 0.276 3.724 16 O -0.494 6.494 17 C -0.223 4.223 18 C -0.243 4.243 19 S 0.212 5.788 20 C -0.238 4.238 21 C -0.065 4.065 22 C -0.229 4.229 23 C -0.246 4.246 24 C -0.107 4.107 25 O -0.090 6.090 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.050 0.950 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.287 0.713 32 H 0.172 0.828 33 H 0.197 0.803 34 H 0.128 0.872 35 H 0.147 0.853 36 H 0.175 0.825 37 H 0.189 0.811 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.583 -11.828 -3.134 14.395 hybrid contribution 0.288 1.300 -0.287 1.362 sum 7.872 -10.528 -3.420 13.583 Atomic orbital electron populations 1.69733 1.07918 1.28393 1.47860 1.26508 0.95951 1.03275 0.94426 0.85022 0.77687 0.76130 0.79742 1.18469 1.21714 1.18505 1.19770 0.92637 0.82188 1.53020 0.87527 1.43423 1.26015 1.14093 1.32697 1.21343 0.89315 1.02744 0.87779 1.21571 0.94413 1.04064 0.94949 1.23421 0.90636 0.71482 0.80678 1.90698 1.29349 1.49479 1.74473 1.84505 1.44247 1.77662 1.25714 1.17906 0.88156 0.84536 0.81820 1.90504 1.58936 1.30953 1.69026 1.21723 0.98180 1.01184 1.01178 1.26164 1.02424 0.95973 0.99762 1.88406 1.29504 1.07894 1.53016 1.22569 1.03500 0.91506 1.06224 1.21643 1.02505 0.87577 0.94806 1.21920 1.01299 0.97403 1.02248 1.22198 1.05307 0.95226 1.01875 1.24855 0.95799 0.92951 0.97098 1.84001 1.57056 1.17223 1.50739 0.91940 0.86941 0.94976 0.88500 0.86814 0.71250 0.82800 0.80279 0.87197 0.85338 0.82485 0.81080 0.74403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.16 10.74 21.67 0.23 -47.92 16 2 C 0.00 0.03 5.40 84.93 0.46 0.48 16 3 Si 0.99 37.68 29.55 68.60 2.03 39.71 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 7 C -0.35 -16.67 8.19 84.07 0.69 -15.98 16 8 H 0.11 4.61 6.98 -2.91 -0.02 4.59 16 9 N -0.44 -22.23 2.52 -645.98 -1.63 -23.86 16 10 C 0.11 5.67 4.44 86.38 0.38 6.05 16 11 C -0.11 -4.54 6.12 29.85 0.18 -4.35 16 12 C 0.49 18.72 8.33 71.24 0.59 19.31 16 13 O -0.55 -24.69 16.74 21.94 0.37 -24.32 16 14 O -0.51 -14.12 13.42 -51.39 -0.69 -14.81 16 15 C 0.48 23.29 7.37 84.96 0.63 23.92 16 16 O -0.60 -31.68 12.85 -4.81 -0.06 -31.74 16 17 C -0.19 -7.32 9.17 22.29 0.20 -7.12 16 18 C -0.11 -3.41 10.09 67.12 0.68 -2.73 16 19 S -0.03 -1.15 18.60 -56.49 -1.05 -2.20 16 20 C -0.09 -2.24 6.20 71.24 0.44 -1.80 16 21 C -0.01 -0.39 6.58 24.83 0.16 -0.23 16 22 C -0.21 -5.07 10.81 22.19 0.24 -4.83 16 23 C -0.23 -4.71 10.91 22.19 0.24 -4.46 16 24 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 25 O -0.19 -5.14 10.65 -2.44 -0.03 -5.16 16 26 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 27 H 0.11 6.25 5.11 -2.39 -0.01 6.24 16 28 H 0.03 1.77 7.19 -2.38 -0.02 1.75 16 29 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 30 H 0.11 4.39 8.14 -2.39 -0.02 4.37 16 31 H 0.43 7.45 9.10 -74.06 -0.67 6.78 16 32 H 0.15 5.48 6.52 -2.91 -0.02 5.46 16 33 H 0.18 3.84 8.03 -2.91 -0.02 3.81 16 34 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.24 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -72.33 350.08 5.32 -67.01 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.44 Total: 35.00 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.71 Total: 8.29 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.40 Total: -71.78 kcal Atomic # 8 Polarization: -75.62 SS G_CDS: -0.41 Total: -76.03 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -1.05 Total: -2.20 kcal Total: -72.33 5.32 -67.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.096 kcal (2) G-P(sol) polarization free energy of solvation -72.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds