Wall clock time and date at job start Tue Mar 31 2020 13:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00136 * 2 1 4 4 H 1.48500 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46880 * 299.99865 * 3 2 1 6 6 H 1.48489 * 109.46924 * 60.00143 * 3 2 1 7 7 C 1.38733 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00019 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00320 * 359.97438 * 7 2 1 10 10 C 1.76193 * 99.99997 * 185.12012 * 9 7 2 11 11 C 1.39228 * 120.02382 * 265.52799 * 10 9 7 12 12 C 1.38128 * 120.20437 * 179.97438 * 11 10 9 13 13 C 1.38085 * 120.24522 * 359.77177 * 12 11 10 14 14 C 1.39638 * 120.03754 * 0.50602 * 13 12 11 15 15 C 1.47853 * 120.10240 * 179.74354 * 14 13 12 16 16 O 1.21557 * 120.00324 * 179.72401 * 15 14 13 17 17 N 1.34778 * 120.00128 * 359.72856 * 15 14 13 18 18 C 1.46500 * 120.00355 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47554 * 179.97438 * 18 17 15 20 20 H 1.09005 * 109.46528 * 60.00116 * 19 18 17 21 21 O 1.42897 * 109.47272 * 300.00397 * 19 18 17 22 22 C 1.52997 * 109.47584 * 179.97438 * 19 18 17 23 23 C 1.50698 * 109.47549 * 184.99699 * 22 19 18 24 24 O 1.20828 * 119.99489 * 0.02562 * 23 22 19 25 25 O 1.34224 * 120.00083 * 179.72415 * 23 22 19 26 26 C 1.38841 * 120.02120 * 85.50999 * 10 9 7 27 27 H 0.96999 * 119.99507 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.89310 * 359.97438 * 11 10 9 29 29 H 1.07997 * 119.88106 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.98091 * 180.25386 * 13 12 11 31 31 H 0.97001 * 119.99995 * 0.02562 * 17 15 14 32 32 H 1.09004 * 109.47067 * 59.99394 * 18 17 15 33 33 H 1.09010 * 109.46978 * 299.99996 * 18 17 15 34 34 H 0.96703 * 113.99579 * 300.00019 * 21 19 18 35 35 H 1.09001 * 109.46684 * 65.00155 * 22 19 18 36 36 H 1.08995 * 109.47458 * 305.00858 * 22 19 18 37 37 H 0.96698 * 116.99667 * 180.27923 * 25 23 22 38 38 H 1.07999 * 120.12040 * 0.04703 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3963 1.2124 7 6 2.0099 -1.2015 -0.0005 8 1 3.0899 -1.2016 -0.0010 9 16 1.1289 -2.7274 -0.0005 10 6 2.4727 -3.8566 0.1535 11 6 3.0360 -4.4284 -0.9840 12 6 4.0900 -5.3136 -0.8676 13 6 4.5950 -5.6339 0.3770 14 6 4.0340 -5.0708 1.5251 15 6 4.5700 -5.4171 2.8588 16 8 4.0835 -4.9220 3.8567 17 7 5.5981 -6.2816 2.9682 18 6 6.1289 -6.6252 4.2898 19 6 7.2822 -7.6184 4.1338 20 1 8.0709 -7.1676 3.5315 21 8 6.8077 -8.8019 3.4887 22 6 7.8369 -7.9768 5.5139 23 6 9.0492 -8.8577 5.3549 24 8 9.4307 -9.1668 4.2508 25 8 9.7088 -9.2940 6.4395 26 6 2.9707 -4.1764 1.4095 27 1 -0.4849 0.8401 -0.0004 28 1 2.6477 -4.1790 -1.9605 29 1 4.5233 -5.7538 -1.7535 30 1 5.4219 -6.3234 0.4628 31 1 5.9867 -6.6764 2.1719 32 1 5.3403 -7.0763 4.8920 33 1 6.4905 -5.7223 4.7820 34 1 6.1027 -9.2564 3.9699 35 1 7.0750 -8.5070 6.0852 36 1 8.1170 -7.0648 6.0410 37 1 10.4828 -9.8531 6.2871 38 1 2.5354 -3.7348 2.2937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:38 Heat of formation + Delta-G solvation = -160.323012 kcal Electronic energy + Delta-G solvation = -23622.922509 eV Core-core repulsion = 19749.225240 eV Total energy + Delta-G solvation = -3873.697269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84039 -40.01364 -38.35812 -37.59213 -36.46501 -34.49825 -32.50747 -32.29539 -30.91994 -30.51400 -27.74923 -25.57134 -23.97058 -22.85170 -22.08242 -21.66813 -20.32160 -18.68750 -18.33117 -17.69697 -17.20339 -17.10072 -16.28722 -16.07853 -15.83483 -15.46760 -14.98482 -14.85014 -14.75910 -14.40831 -13.97433 -13.70912 -13.49661 -13.35324 -13.09213 -12.91444 -12.60781 -12.18681 -11.95979 -11.68451 -11.54078 -11.15568 -11.12158 -11.10078 -11.05713 -10.76384 -10.69652 -9.99026 -9.81076 -9.27445 -9.16967 -9.00854 -8.58901 -8.02568 -6.71219 -6.28830 -4.02586 1.15565 1.67179 1.74675 2.38935 3.00778 3.06124 3.19444 3.22499 3.28800 3.47245 3.85183 4.04018 4.08770 4.19777 4.26282 4.40386 4.80746 4.81861 4.89320 4.97018 5.07496 5.11181 5.25066 5.31706 5.47496 5.48549 5.74003 5.87513 5.98608 6.02853 6.23103 6.26420 6.58229 6.64776 6.93132 7.10788 7.19064 7.41352 7.44292 7.57821 8.23174 8.32983 9.17158 10.77941 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.002235 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.793351 B =12522.493657 C =13068.931346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.076 0.924 9 S -0.035 6.035 10 C -0.108 4.108 11 C -0.054 4.054 12 C -0.141 4.141 13 C -0.088 4.088 14 C -0.156 4.156 15 C 0.565 3.435 16 O -0.536 6.536 17 N -0.727 5.727 18 C 0.089 3.911 19 C 0.108 3.892 20 H 0.116 0.884 21 O -0.544 6.544 22 C -0.147 4.147 23 C 0.478 3.522 24 O -0.498 6.498 25 O -0.521 6.521 26 C -0.018 4.018 27 H 0.269 0.731 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.405 0.595 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.375 0.625 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.412 0.588 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.627 -18.235 9.171 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.666 4.666 8 H 0.094 0.906 9 S 0.199 5.801 10 C -0.218 4.218 11 C -0.075 4.075 12 C -0.161 4.161 13 C -0.107 4.107 14 C -0.160 4.160 15 C 0.354 3.646 16 O -0.413 6.413 17 N -0.381 5.381 18 C -0.035 4.035 19 C 0.048 3.952 20 H 0.133 0.867 21 O -0.349 6.349 22 C -0.185 4.185 23 C 0.319 3.681 24 O -0.384 6.384 25 O -0.334 6.334 26 C -0.040 4.040 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.242 0.758 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.223 0.777 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.271 0.729 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.142 -17.585 9.132 24.938 hybrid contribution 2.248 0.499 0.176 2.310 sum 17.390 -17.086 9.308 26.096 Atomic orbital electron populations 1.70000 1.05892 1.27555 1.47088 1.25014 0.95141 0.99138 0.94371 0.86060 0.79721 0.81539 0.77947 1.19510 1.20484 1.20438 1.22882 0.94912 0.90166 1.58647 0.90567 1.83608 1.04291 0.97157 1.95020 1.22854 1.03003 1.02139 0.93853 1.21971 0.93297 0.93391 0.98860 1.21068 0.98159 0.99878 0.96991 1.21172 0.98678 0.98568 0.92296 1.19816 1.00834 1.03403 0.91996 1.18420 0.78954 0.77971 0.89278 1.90776 1.59270 1.52755 1.38505 1.45712 1.35997 1.47408 1.09004 1.21962 0.96201 0.99196 0.86176 1.21984 0.95608 0.85805 0.91845 0.86654 1.86732 1.57675 1.39330 1.51114 1.22055 0.94728 1.00886 1.00840 1.23174 0.84264 0.78735 0.81917 1.90798 1.66045 1.54634 1.26946 1.84520 1.44691 1.65243 1.38897 1.21944 0.91935 0.91957 0.98179 0.92115 0.85054 0.85806 0.86372 0.75829 0.90724 0.90119 0.77732 0.86759 0.86140 0.72931 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.45 13.22 55.49 0.73 -24.71 16 2 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.65 9.46 30.92 0.29 -14.36 16 8 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 9 S -0.04 -0.91 21.41 -107.50 -2.30 -3.21 16 10 C -0.11 -2.31 5.45 -38.99 -0.21 -2.52 16 11 C -0.05 -0.97 9.79 -39.25 -0.38 -1.35 16 12 C -0.14 -2.04 10.02 -39.68 -0.40 -2.44 16 13 C -0.09 -1.22 9.54 -39.12 -0.37 -1.59 16 14 C -0.16 -2.60 5.87 -105.00 -0.62 -3.22 16 15 C 0.57 8.80 7.77 -12.33 -0.10 8.70 16 16 O -0.54 -10.20 16.34 5.32 0.09 -10.11 16 17 N -0.73 -7.86 5.40 -61.24 -0.33 -8.19 16 18 C 0.09 0.71 5.34 -4.04 -0.02 0.69 16 19 C 0.11 0.67 2.60 -26.73 -0.07 0.60 16 20 H 0.12 0.84 7.96 -51.93 -0.41 0.42 16 21 O -0.54 -4.05 12.32 -49.66 -0.61 -4.66 16 22 C -0.15 -0.62 5.49 -27.89 -0.15 -0.77 16 23 C 0.48 3.20 8.21 36.00 0.30 3.49 16 24 O -0.50 -5.25 16.18 -24.05 -0.39 -5.64 16 25 O -0.52 -2.51 13.42 -39.24 -0.53 -3.04 16 26 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.20 6.40 -52.49 -0.34 0.86 16 31 H 0.41 3.74 6.38 -40.82 -0.26 3.48 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.38 1.55 9.05 45.56 0.41 1.96 16 35 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.41 0.49 9.10 45.56 0.41 0.91 16 38 H 0.14 3.03 7.65 -52.49 -0.40 2.63 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -37.36 354.86 -7.87 -45.23 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.66 Total: 4.10 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -2.20 Total: -11.57 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.40 Total: -32.90 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.44 Total: -23.45 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.36 -7.87 -45.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.089 kcal (2) G-P(sol) polarization free energy of solvation -37.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds