Wall clock time and date at job start Tue Mar 31 2020 13:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86801 * 119.99978 * 2 1 4 4 H 1.48505 * 109.46864 * 275.40680 * 3 2 1 5 5 H 1.48490 * 109.47337 * 35.40620 * 3 2 1 6 6 H 1.48506 * 109.46943 * 155.41124 * 3 2 1 7 7 C 1.39946 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99863 * 341.74008 * 7 2 1 9 9 C 1.41393 * 120.00359 * 161.72954 * 7 2 1 10 10 C 1.40737 * 120.24278 * 330.23811 * 9 7 2 11 11 C 1.37599 * 119.74728 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24723 * 0.02562 * 11 10 9 13 13 C 1.38610 * 120.49963 * 0.02562 * 12 11 10 14 14 S 1.76199 * 119.87345 * 179.97438 * 13 12 11 15 15 O 1.42095 * 106.40242 * 336.45835 * 14 13 12 16 16 O 1.42104 * 106.40165 * 203.54108 * 14 13 12 17 17 N 1.65599 * 107.21983 * 90.00179 * 14 13 12 18 18 C 1.46495 * 120.00315 * 64.99693 * 17 14 13 19 19 H 1.09002 * 112.90859 * 346.25469 * 18 17 14 20 20 C 1.53960 * 113.61109 * 117.57565 * 18 17 14 21 21 C 1.53780 * 87.10839 * 89.16373 * 20 18 17 22 22 C 1.53778 * 113.61775 * 215.00077 * 18 17 14 23 23 H 1.08994 * 113.61450 * 156.24879 * 22 18 17 24 24 C 1.50703 * 113.61276 * 25.43084 * 22 18 17 25 25 O 1.20826 * 119.99996 * 1.53189 * 24 22 18 26 26 O 1.34228 * 119.99842 * 181.52532 * 24 22 18 27 27 C 1.37646 * 120.25153 * 0.25534 * 13 12 11 28 28 H 0.97002 * 120.00410 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.12532 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.87434 * 179.97438 * 11 10 9 31 31 H 1.08000 * 119.74889 * 179.97438 * 12 11 10 32 32 H 0.97002 * 119.99423 * 244.99427 * 17 14 13 33 33 H 1.08997 * 113.67152 * 334.59322 * 20 18 17 34 34 H 1.09003 * 113.61489 * 203.72230 * 20 18 17 35 35 H 1.09013 * 113.61006 * 270.80981 * 21 20 18 36 36 H 1.08997 * 113.69535 * 139.92223 * 21 20 18 37 37 H 0.96698 * 116.99359 * 180.02562 * 26 24 22 38 38 H 1.07997 * 120.12473 * 179.70651 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3754 2.1124 -1.3939 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4098 0.5826 7 6 2.0079 -1.2120 0.0005 8 1 1.5087 -2.1236 0.2940 9 6 3.3684 -1.2431 -0.3833 10 6 3.8636 -0.3114 -1.3147 11 6 5.1892 -0.3513 -1.6815 12 6 6.0361 -1.3050 -1.1374 13 6 5.5590 -2.2281 -0.2200 14 16 6.6495 -3.4332 0.4605 15 8 7.7154 -3.5795 -0.4677 16 8 5.8347 -4.5172 0.8855 17 7 7.3094 -2.7789 1.8311 18 6 6.4550 -2.4711 2.9807 19 1 5.3928 -2.4896 2.7368 20 6 6.8124 -3.2714 4.2464 21 6 7.7840 -2.1323 4.5978 22 6 6.8884 -1.2128 3.7510 23 1 6.0813 -0.7476 4.3169 24 6 7.6586 -0.2263 2.9115 25 8 7.8553 -0.4531 1.7411 26 8 8.1258 0.9043 3.4638 27 6 4.2353 -2.2105 0.1570 28 1 -0.4851 0.8400 -0.0004 29 1 3.2054 0.4314 -1.7407 30 1 5.5713 0.3624 -2.3964 31 1 7.0750 -1.3292 -1.4312 32 1 8.2618 -2.5994 1.8728 33 1 7.3081 -4.2197 4.0392 34 1 5.9844 -3.3711 4.9483 35 1 8.7839 -2.2685 4.1855 36 1 7.7944 -1.8767 5.6574 37 1 8.6135 1.5064 2.8854 38 1 3.8647 -2.9337 0.8684 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:16 Heat of formation + Delta-G solvation = -143.158852 kcal Electronic energy + Delta-G solvation = -26331.343454 eV Core-core repulsion = 22458.390479 eV Total energy + Delta-G solvation = -3872.952975 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73032 -39.69247 -39.36760 -38.24324 -36.93951 -36.88626 -35.64183 -33.68989 -32.53594 -31.91087 -28.29370 -27.23649 -25.95233 -24.09925 -23.00082 -22.70593 -20.96703 -20.47280 -19.75758 -18.99829 -18.59090 -18.08032 -17.78805 -17.07594 -16.83574 -16.65271 -16.47050 -15.84018 -15.79554 -15.36367 -14.87573 -14.71503 -14.68034 -14.07201 -13.90631 -13.58399 -13.54809 -13.41751 -13.23620 -13.18495 -13.08465 -12.86853 -12.60387 -12.55058 -12.35377 -12.00541 -11.82084 -11.73087 -11.57050 -11.41904 -11.31873 -11.08554 -10.30294 -9.99959 -9.68842 -8.96864 -6.59131 -0.51354 0.18704 0.64465 1.20386 1.29557 1.33346 1.41176 2.00343 2.04905 2.24813 2.41249 2.74669 3.28239 3.30143 3.43326 3.55487 3.84360 4.04813 4.11743 4.19433 4.31452 4.42095 4.53425 4.71710 4.75177 4.78771 4.83526 4.94596 5.04903 5.06877 5.16637 5.33168 5.43858 5.46478 5.62730 5.69535 5.75286 5.97495 6.13165 6.23699 6.57707 6.70037 7.09397 8.11213 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.005601 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.717508 B = 4997.529447 C = 5705.900676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.052 3.948 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.480 4.480 8 H 0.064 0.936 9 C 0.056 3.944 10 C -0.206 4.206 11 C -0.100 4.100 12 C -0.133 4.133 13 C -0.627 4.627 14 S 2.719 3.281 15 O -0.990 6.990 16 O -0.986 6.986 17 N -1.070 6.070 18 C 0.125 3.875 19 H 0.099 0.901 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.121 4.121 23 H 0.154 0.846 24 C 0.482 3.518 25 O -0.529 6.529 26 O -0.515 6.515 27 C -0.122 4.122 28 H 0.296 0.704 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.425 0.575 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.422 0.578 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.296 2.338 11.522 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.164 4.164 3 Si 0.780 3.220 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.053 3.947 10 C -0.225 4.225 11 C -0.119 4.119 12 C -0.153 4.153 13 C -0.716 4.716 14 S 2.810 3.190 15 O -0.981 6.981 16 O -0.976 6.976 17 N -0.830 5.830 18 C 0.016 3.984 19 H 0.117 0.883 20 C -0.180 4.180 21 C -0.142 4.142 22 C -0.142 4.142 23 H 0.171 0.829 24 C 0.325 3.675 25 O -0.418 6.418 26 O -0.328 6.328 27 C -0.142 4.142 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.262 0.738 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.283 0.717 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.837 1.216 11.117 18.580 hybrid contribution -0.100 1.859 -0.909 2.072 sum 14.737 3.076 10.209 18.189 Atomic orbital electron populations 1.69703 1.09052 1.31680 1.36103 1.26750 0.95300 1.03908 0.90395 0.85607 0.79689 0.76945 0.79713 1.18312 1.19673 1.17809 1.19451 0.93938 0.96025 1.41550 0.91820 1.17931 0.93003 0.92580 0.91221 1.21450 0.96670 1.03141 1.01240 1.21094 0.93131 0.98314 0.99334 1.20428 0.99399 0.96265 0.99226 1.30412 1.09625 1.18829 1.12686 1.00833 0.72455 0.73272 0.72394 1.93491 1.55322 1.86519 1.62726 1.93530 1.70572 1.51279 1.82234 1.54803 1.18779 1.81765 1.27658 1.21988 0.94627 0.94981 0.86814 0.88338 1.23452 1.00908 0.98477 0.95200 1.22856 0.97409 0.92670 1.01225 1.23202 1.01006 0.91800 0.98179 0.82862 1.23615 0.76505 0.80889 0.86531 1.90744 1.55878 1.76283 1.18865 1.84505 1.68200 1.31883 1.48230 1.20921 0.91371 1.00886 1.01057 0.89306 0.87487 0.84597 0.85384 0.73754 0.89539 0.86170 0.89370 0.87123 0.71718 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.53 13.93 21.83 0.30 -44.22 16 2 C 0.05 2.71 5.40 85.26 0.46 3.17 16 3 Si 0.96 40.89 24.52 68.60 1.68 42.57 16 4 H -0.26 -10.45 6.71 99.48 0.67 -9.79 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.25 -11.11 6.86 99.48 0.68 -10.42 16 7 C -0.48 -26.31 9.57 23.46 0.22 -26.09 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 C 0.06 2.85 5.10 -21.29 -0.11 2.74 16 10 C -0.21 -9.67 7.18 22.73 0.16 -9.51 16 11 C -0.10 -4.19 10.02 22.22 0.22 -3.96 16 12 C -0.13 -5.54 9.53 22.46 0.21 -5.33 16 13 C -0.63 -26.59 5.94 22.22 0.13 -26.45 16 14 S 2.72 99.10 5.68 -56.49 -0.32 98.78 16 15 O -0.99 -39.53 17.27 -128.00 -2.21 -41.74 16 16 O -0.99 -39.67 17.02 -128.00 -2.18 -41.85 16 17 N -1.07 -29.30 3.94 -166.95 -0.66 -29.96 16 18 C 0.12 2.89 4.23 45.58 0.19 3.09 16 19 H 0.10 2.61 7.79 -2.39 -0.02 2.59 16 20 C -0.14 -2.14 7.89 31.18 0.25 -1.90 16 21 C -0.10 -1.26 7.46 31.12 0.23 -1.03 16 22 C -0.12 -2.19 4.23 -11.01 -0.05 -2.24 16 23 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 24 C 0.48 10.77 7.68 71.24 0.55 11.32 16 25 O -0.53 -15.50 14.62 21.96 0.32 -15.18 16 26 O -0.51 -8.76 13.42 -51.40 -0.69 -9.45 16 27 C -0.12 -5.68 9.00 22.73 0.20 -5.47 16 28 H 0.30 14.02 8.30 -92.71 -0.77 13.25 16 29 H 0.11 4.91 4.73 -2.91 -0.01 4.90 16 30 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 31 H 0.13 4.89 7.60 -2.91 -0.02 4.87 16 32 H 0.42 10.15 7.59 -96.75 -0.73 9.42 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.04 8.07 -2.38 -0.02 1.02 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.42 4.28 9.10 -74.06 -0.67 3.61 16 38 H 0.12 5.41 7.60 -2.91 -0.02 5.39 16 Total: -1.00 -72.45 333.76 -1.41 -73.86 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.34 Total: 28.88 kcal Atomic # 6 Polarization: -64.35 SS G_CDS: 2.68 Total: -61.67 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -0.35 Total: -74.18 kcal Atomic # 8 Polarization: -103.47 SS G_CDS: -4.76 Total: -108.23 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.68 Total: 42.57 kcal Atomic # 16 Polarization: 99.10 SS G_CDS: -0.32 Total: 98.78 kcal Total: -72.45 -1.41 -73.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.302 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds