Wall clock time and date at job start Tue Mar 31 2020 13:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48501 * 109.47131 * 269.99702 * 3 2 1 5 5 H 1.48497 * 109.47187 * 29.99615 * 3 2 1 6 6 H 1.48500 * 109.47368 * 149.99554 * 3 2 1 7 7 C 1.39942 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00011 * 162.28598 * 7 2 1 9 9 C 1.41389 * 120.00137 * 342.28958 * 7 2 1 10 10 C 1.40740 * 120.24323 * 335.23136 * 9 7 2 11 11 C 1.37596 * 119.74472 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.25038 * 0.02562 * 11 10 9 13 13 C 1.38610 * 120.50035 * 359.97223 * 12 11 10 14 14 S 1.76206 * 119.87438 * 179.74375 * 13 12 11 15 15 O 1.42097 * 106.40018 * 203.54275 * 14 13 12 16 16 O 1.42101 * 106.40254 * 336.46669 * 14 13 12 17 17 N 1.65606 * 107.21457 * 90.00362 * 14 13 12 18 18 C 1.46498 * 119.99588 * 65.00286 * 17 14 13 19 19 C 1.53007 * 109.46802 * 164.99842 * 18 17 14 20 20 H 1.08998 * 115.54752 * 330.58108 * 19 18 17 21 21 C 1.52997 * 117.49763 * 116.25084 * 19 18 17 22 22 C 1.53000 * 117.49620 * 184.91004 * 19 18 17 23 23 H 1.09000 * 117.49389 * 145.00212 * 22 19 18 24 24 C 1.50691 * 117.50221 * 359.97438 * 22 19 18 25 25 O 1.20826 * 119.99850 * 0.02562 * 24 22 19 26 26 O 1.34226 * 120.00337 * 179.97438 * 24 22 19 27 27 C 1.37637 * 120.25194 * 0.02590 * 13 12 11 28 28 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.12512 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87265 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.74760 * 179.97438 * 12 11 10 32 32 H 0.96996 * 119.99864 * 244.99672 * 17 14 13 33 33 H 1.09000 * 109.47209 * 284.99414 * 18 17 14 34 34 H 1.08997 * 109.47844 * 44.99909 * 18 17 14 35 35 H 1.08999 * 117.49959 * 214.98186 * 21 19 18 36 36 H 1.09003 * 117.49909 * 359.97438 * 21 19 18 37 37 H 0.96698 * 117.00803 * 180.02562 * 26 24 22 38 38 H 1.07994 * 120.12940 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0496 -1.2342 -0.2840 9 6 1.3513 -2.4072 0.3736 10 6 0.2228 -2.3637 1.2135 11 6 -0.4080 -3.5333 1.5705 12 6 0.0645 -4.7515 1.1064 13 6 1.1749 -4.8063 0.2787 14 16 1.7653 -6.3639 -0.2959 15 8 3.1372 -6.1794 -0.6168 16 8 1.3088 -7.3347 0.6360 17 7 0.9901 -6.6855 -1.7236 18 6 1.2227 -5.8323 -2.8916 19 6 0.7061 -6.5361 -4.1481 20 1 0.7338 -7.6254 -4.1218 21 6 -0.4506 -5.8768 -4.9020 22 6 0.9607 -5.8551 -5.4943 23 1 1.1559 -6.4965 -6.3538 24 6 1.7006 -4.5424 -5.4812 25 8 2.0688 -4.0669 -4.4333 26 8 1.9516 -3.9019 -6.6338 27 6 1.8218 -3.6491 -0.0913 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1465 -1.4160 1.5763 30 1 -1.2743 -3.5022 2.2145 31 1 -0.4367 -5.6646 1.3921 32 1 0.3822 -7.4387 -1.7864 33 1 0.6956 -4.8871 -2.7618 34 1 2.2908 -5.6414 -2.9953 35 1 -1.1836 -6.5323 -5.3720 36 1 -0.8438 -4.9419 -4.5026 37 1 2.4295 -3.0633 -6.5751 38 1 2.6870 -3.6942 -0.7359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:38 Heat of formation + Delta-G solvation = -147.928578 kcal Electronic energy + Delta-G solvation = -25427.449353 eV Core-core repulsion = 21554.289547 eV Total energy + Delta-G solvation = -3873.159806 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54803 -39.46418 -38.68472 -38.23199 -36.93128 -36.89778 -35.69167 -35.28554 -31.92985 -31.60646 -27.78468 -27.36101 -26.07811 -23.68782 -22.84699 -22.43901 -21.44862 -20.51216 -19.61127 -19.19575 -18.51694 -17.99465 -17.71292 -17.02377 -16.75377 -16.61648 -16.50031 -15.92369 -15.46861 -15.24721 -15.07366 -14.75684 -14.57679 -14.32249 -13.72926 -13.67021 -13.35177 -13.20870 -13.15649 -13.06492 -13.05265 -12.83895 -12.63512 -12.58243 -12.37379 -12.23556 -11.66071 -11.57468 -11.53557 -11.39139 -11.18965 -11.15741 -10.38251 -9.86944 -9.57202 -8.75318 -6.46888 -0.49872 0.38887 0.82731 1.11246 1.33747 1.41543 1.49321 2.01839 2.14374 2.15803 2.52761 2.72252 2.77023 3.39005 3.49956 3.64178 3.75335 3.83652 4.21277 4.29208 4.39158 4.43272 4.51504 4.69524 4.81331 4.83129 4.88172 4.89484 5.02293 5.05825 5.18219 5.26909 5.39172 5.55221 5.65762 5.86241 5.91903 6.09043 6.20755 6.50242 6.77220 6.83090 7.00697 8.23039 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.005324 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.513729 B = 5258.309420 C = 7301.670152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.062 3.938 10 C -0.140 4.140 11 C -0.123 4.123 12 C -0.147 4.147 13 C -0.641 4.641 14 S 2.721 3.279 15 O -0.997 6.997 16 O -0.984 6.984 17 N -1.099 6.099 18 C 0.149 3.851 19 C -0.129 4.129 20 H 0.164 0.836 21 C -0.129 4.129 22 C -0.159 4.159 23 H 0.176 0.824 24 C 0.493 3.507 25 O -0.545 6.545 26 O -0.510 6.510 27 C -0.143 4.143 28 H 0.292 0.708 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.430 0.570 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.086 0.914 37 H 0.426 0.574 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -9.229 -12.814 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.059 3.941 10 C -0.160 4.160 11 C -0.142 4.142 12 C -0.168 4.168 13 C -0.729 4.729 14 S 2.813 3.187 15 O -0.987 6.987 16 O -0.974 6.974 17 N -0.863 5.863 18 C 0.024 3.976 19 C -0.148 4.148 20 H 0.181 0.819 21 C -0.166 4.166 22 C -0.179 4.179 23 H 0.194 0.806 24 C 0.338 3.662 25 O -0.435 6.435 26 O -0.323 6.323 27 C -0.164 4.164 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.268 0.732 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.171 0.829 36 H 0.105 0.895 37 H 0.287 0.713 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.042 -9.690 -12.166 15.848 hybrid contribution 0.211 2.133 0.131 2.147 sum -2.831 -7.557 -12.035 14.490 Atomic orbital electron populations 1.69810 1.08844 1.30973 1.35067 1.26725 0.95578 1.04390 0.90978 0.85214 0.79163 0.75793 0.79661 1.18605 1.18350 1.18519 1.19811 0.98341 0.92460 1.42174 0.90872 1.18040 0.92718 0.92840 0.90486 1.21632 0.98225 0.97762 0.98353 1.21162 0.99940 0.92564 1.00519 1.20492 0.96749 0.98214 1.01321 1.30269 1.09311 1.19233 1.14125 1.00706 0.72867 0.72808 0.72351 1.93496 1.33847 1.86992 1.84342 1.93497 1.82444 1.59515 1.61965 1.55144 1.63939 1.41874 1.25367 1.20978 1.01250 0.91683 0.83738 1.22688 1.02456 1.01359 0.88297 0.81899 1.23404 0.89452 1.03394 1.00353 1.22015 1.01331 0.93312 1.01205 0.80644 1.23075 0.76202 0.86286 0.80674 1.90871 1.50697 1.67971 1.33990 1.84425 1.72037 1.40571 1.35310 1.20793 1.00938 0.92373 1.02270 0.89689 0.86779 0.85232 0.84696 0.73172 0.93066 0.91156 0.82864 0.89535 0.71307 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.33 10.97 21.83 0.24 -42.09 16 2 C 0.04 1.97 5.14 85.26 0.44 2.40 16 3 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.50 -27.83 9.05 23.46 0.21 -27.61 16 8 H 0.07 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.06 3.49 5.57 -21.29 -0.12 3.37 16 10 C -0.14 -7.36 8.70 22.73 0.20 -7.17 16 11 C -0.12 -5.63 10.02 22.22 0.22 -5.41 16 12 C -0.15 -6.49 9.53 22.46 0.21 -6.27 16 13 C -0.64 -29.50 5.94 22.22 0.13 -29.37 16 14 S 2.72 105.01 5.74 -56.49 -0.32 104.69 16 15 O -1.00 -44.64 16.73 -128.00 -2.14 -46.78 16 16 O -0.98 -39.07 17.27 -128.00 -2.21 -41.28 16 17 N -1.10 -31.48 6.00 -187.48 -1.12 -32.61 16 18 C 0.15 4.49 4.76 86.38 0.41 4.90 16 19 C -0.13 -2.34 5.83 -10.79 -0.06 -2.40 16 20 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 21 C -0.13 -1.92 9.88 30.62 0.30 -1.61 16 22 C -0.16 -2.63 6.30 -11.52 -0.07 -2.70 16 23 H 0.18 1.59 8.14 -2.39 -0.02 1.57 16 24 C 0.49 12.08 8.09 71.23 0.58 12.66 16 25 O -0.54 -19.08 13.87 21.96 0.30 -18.77 16 26 O -0.51 -9.60 13.42 -51.37 -0.69 -10.29 16 27 C -0.14 -7.51 9.26 22.73 0.21 -7.30 16 28 H 0.29 13.45 8.30 -92.70 -0.77 12.68 16 29 H 0.11 6.11 6.18 -2.91 -0.02 6.09 16 30 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.14 5.10 7.60 -2.91 -0.02 5.08 16 32 H 0.43 8.76 8.65 -96.75 -0.84 7.92 16 33 H 0.05 1.83 7.29 -2.39 -0.02 1.82 16 34 H 0.07 2.49 6.54 -2.39 -0.02 2.48 16 35 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.72 8.03 -2.39 -0.02 1.70 16 37 H 0.43 5.41 9.10 -74.06 -0.67 4.74 16 38 H 0.10 5.37 7.60 -2.91 -0.02 5.34 16 Total: -1.00 -77.70 342.68 -1.63 -79.33 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.38 Total: 33.83 kcal Atomic # 6 Polarization: -69.18 SS G_CDS: 2.66 Total: -66.52 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -0.88 Total: -74.70 kcal Atomic # 8 Polarization: -112.39 SS G_CDS: -4.74 Total: -117.13 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: 105.01 SS G_CDS: -0.32 Total: 104.69 kcal Total: -77.70 -1.63 -79.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.602 kcal (2) G-P(sol) polarization free energy of solvation -77.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds