Wall clock time and date at job start Tue Mar 31 2020 14:40:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.47357 * 2 1
4 4 C 1.50696 * 109.46998 * 240.00382 * 2 1 3
5 5 C 1.33083 * 120.00360 * 125.00028 * 4 2 1
6 6 C 1.46949 * 120.00347 * 180.02562 * 5 4 2
7 7 O 1.21531 * 120.00010 * 359.97438 * 6 5 4
8 8 O 1.34800 * 120.00001 * 180.02562 * 6 5 4
9 9 N 1.46495 * 109.47039 * 120.00282 * 2 1 3
10 10 S 1.65606 * 120.00104 * 264.99870 * 9 2 1
11 11 O 1.42095 * 106.39828 * 311.45796 * 10 9 2
12 12 O 1.42099 * 106.40039 * 178.54185 * 10 9 2
13 13 C 1.76196 * 107.21539 * 65.00195 * 10 9 2
14 14 C 1.38661 * 119.87204 * 269.97491 * 13 10 9
15 15 C 1.38617 * 120.49583 * 180.02562 * 14 13 10
16 16 C 1.37635 * 120.25342 * 0.02562 * 15 14 13
17 17 C 1.40700 * 119.74061 * 0.02562 * 16 15 14
18 18 C 1.41398 * 120.24232 * 180.02562 * 17 16 15
19 19 H 1.07996 * 119.99853 * 335.57949 * 18 17 16
20 20 C 1.39945 * 119.99944 * 155.57438 * 18 17 16
21 21 N 1.30826 * 120.00259 * 341.92569 * 20 18 17
22 22 Si 1.86806 * 119.99911 * 161.92338 * 20 18 17
23 23 H 1.48501 * 109.46904 * 0.02562 * 22 20 18
24 24 H 1.48497 * 109.47094 * 120.00303 * 22 20 18
25 25 H 1.48500 * 109.46961 * 240.00232 * 22 20 18
26 26 C 1.37599 * 119.87557 * 90.00268 * 13 10 9
27 27 H 1.08999 * 109.47295 * 59.99483 * 1 2 3
28 28 H 1.09000 * 109.47357 * 179.97438 * 1 2 3
29 29 H 1.09003 * 109.47190 * 299.99934 * 1 2 3
30 30 H 1.08008 * 120.00061 * 304.99911 * 4 2 1
31 31 H 1.08003 * 119.99333 * 0.02562 * 5 4 2
32 32 H 0.96695 * 116.99858 * 179.97438 * 8 6 5
33 33 H 0.97007 * 119.99854 * 85.00130 * 9 2 1
34 34 H 1.07988 * 119.75201 * 0.02562 * 14 13 10
35 35 H 1.08003 * 119.86873 * 179.97438 * 15 14 13
36 36 H 1.07999 * 120.13160 * 180.02562 * 16 15 14
37 37 H 0.96997 * 120.00151 * 180.02562 * 21 20 18
38 38 H 1.07990 * 120.12801 * 0.25159 * 26 13 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 6 2.8773 -0.0962 -2.0550
6 6 3.3667 -0.7887 -3.2552
7 8 3.0001 -1.9224 -3.4946
8 8 4.2231 -0.1668 -4.0901
9 7 2.0183 -0.6906 1.1961
10 16 2.4122 0.1771 2.5505
11 8 3.2437 1.2441 2.1156
12 8 2.8124 -0.7700 3.5314
13 6 0.9275 0.9145 3.1474
14 6 0.5532 2.1728 2.7007
15 6 -0.6118 2.7653 3.1622
16 6 -1.4106 2.1092 4.0710
17 6 -1.0401 0.8326 4.5320
18 6 -1.8531 0.1488 5.4653
19 1 -2.5114 0.7042 6.1168
20 6 -1.8047 -1.2475 5.5445
21 7 -1.3017 -1.9418 4.5563
22 14 -2.4582 -2.1202 7.0614
23 1 -2.9707 -1.1159 8.0279
24 1 -3.5593 -3.0363 6.6696
25 1 -1.3647 -2.9020 7.6923
26 6 0.1441 0.2400 4.0555
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 1.7065 -1.7179 -1.4433
31 1 3.2034 0.9111 -1.8420
32 1 4.5175 -0.6627 -4.8662
33 1 2.1109 -1.6563 1.1947
34 1 1.1741 2.6949 1.9880
35 1 -0.8934 3.7459 2.8077
36 1 -2.3181 2.5726 4.4289
37 1 -1.2685 -2.9097 4.6111
38 1 0.4398 -0.7379 4.4055
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001604059137.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:40:02
Heat of formation + Delta-G solvation = -138.474725 kcal
Electronic energy + Delta-G solvation = -25111.474570 eV
Core-core repulsion = 21238.724714 eV
Total energy + Delta-G solvation = -3872.749856 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.086 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.28199 -37.74629 -37.31368 -36.56024 -36.18513 -35.29048 -33.88277 -32.64149
-30.35424 -29.64586 -29.38293 -25.53960 -25.18861 -22.02170 -21.86740 -21.20088
-20.07383 -18.94188 -18.42112 -17.94206 -17.12036 -16.94922 -16.19970 -15.78716
-15.61388 -15.09465 -14.85600 -14.52824 -14.23000 -13.71915 -13.49893 -13.35291
-13.11398 -12.73701 -12.39928 -12.27521 -11.88418 -11.80942 -11.59953 -11.57089
-11.45649 -11.38298 -11.23679 -11.15849 -11.07756 -10.85650 -10.77731 -10.64212
-9.97037 -9.94543 -9.72396 -9.41136 -9.19419 -8.16064 -7.68973 -6.99902
-4.57485 0.73082 1.15221 2.12866 2.64838 2.74992 2.86982 2.99161
3.03586 3.05116 3.58015 3.80147 4.21722 4.41835 4.57783 4.75198
5.00256 5.11599 5.17097 5.24513 5.33321 5.56030 5.88272 5.95671
5.97622 6.08144 6.19259 6.23644 6.27895 6.46041 6.51726 6.78932
6.79819 7.01849 7.14734 7.19779 7.40098 7.59418 7.68295 7.72395
7.95095 8.28407 8.62094 8.65973 9.96961
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.017332 B = 0.003479 C = 0.003315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.128708 B = 8047.447842 C = 8445.532240
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.174 3.826
3 H 0.103 0.897
4 C -0.042 4.042
5 C -0.191 4.191
6 C 0.516 3.484
7 O -0.522 6.522
8 O -0.513 6.513
9 N -1.113 6.113
10 S 2.688 3.312
11 O -0.976 6.976
12 O -0.967 6.967
13 C -0.639 4.639
14 C -0.162 4.162
15 C -0.104 4.104
16 C -0.187 4.187
17 C 0.091 3.909
18 C -0.457 4.457
19 H 0.083 0.917
20 C 0.074 3.926
21 N -0.790 5.790
22 Si 0.911 3.089
23 H -0.259 1.259
24 H -0.273 1.273
25 H -0.269 1.269
26 C -0.054 4.054
27 H 0.066 0.934
28 H 0.067 0.933
29 H 0.087 0.913
30 H 0.136 0.864
31 H 0.146 0.854
32 H 0.411 0.589
33 H 0.417 0.583
34 H 0.105 0.895
35 H 0.097 0.903
36 H 0.099 0.901
37 H 0.286 0.714
38 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.179 1.118 -11.209 12.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.067 3.933
3 H 0.121 0.879
4 C -0.062 4.062
5 C -0.211 4.211
6 C 0.361 3.639
7 O -0.413 6.413
8 O -0.324 6.324
9 N -0.869 5.869
10 S 2.784 3.216
11 O -0.966 6.966
12 O -0.957 6.957
13 C -0.732 4.732
14 C -0.183 4.183
15 C -0.123 4.123
16 C -0.207 4.207
17 C 0.088 3.912
18 C -0.486 4.486
19 H 0.101 0.899
20 C -0.145 4.145
21 N -0.414 5.414
22 Si 0.735 3.265
23 H -0.183 1.183
24 H -0.198 1.198
25 H -0.193 1.193
26 C -0.075 4.075
27 H 0.085 0.915
28 H 0.086 0.914
29 H 0.106 0.894
30 H 0.154 0.846
31 H 0.163 0.837
32 H 0.269 0.731
33 H 0.251 0.749
34 H 0.123 0.877
35 H 0.115 0.885
36 H 0.117 0.883
37 H 0.097 0.903
38 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 4.845 1.044 -10.650 11.747
hybrid contribution -0.916 -1.073 0.039 1.411
sum 3.929 -0.029 -10.610 11.315
Atomic orbital electron populations
1.22393 0.93135 1.03872 1.04067 1.19910 0.95370 0.96076 0.81952
0.87907 1.24115 0.90036 0.99817 0.92258 1.21976 1.02362 1.02669
0.94080 1.21291 0.75433 0.84012 0.83133 1.90913 1.56664 1.19410
1.74293 1.84636 1.59549 1.50299 1.37938 1.55696 1.84154 1.19843
1.27220 1.01692 0.74746 0.73101 0.72046 1.93508 1.65427 1.55844
1.81835 1.93557 1.82008 1.62367 1.57784 1.29846 1.22095 1.07002
1.14222 1.19972 0.99030 0.94513 1.04768 1.20618 0.95244 0.98137
0.98331 1.21217 1.00002 0.98118 1.01408 1.17691 0.91131 0.91343
0.91077 1.19647 1.20853 0.91263 1.16849 0.89893 1.25959 0.93594
0.98076 0.96841 1.69721 1.33799 1.08830 1.29066 0.86202 0.79227
0.79528 0.81535 1.18294 1.19822 1.19346 1.21224 0.92336 0.99337
0.94620 0.91514 0.91381 0.89387 0.84639 0.83670 0.73087 0.74940
0.87686 0.88486 0.88324 0.90303 0.84564
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.28 9.50 37.16 0.35 -1.93 16
2 C 0.17 2.20 3.27 -69.09 -0.23 1.98 16
3 H 0.10 1.26 7.18 -51.93 -0.37 0.89 16
4 C -0.04 -0.46 8.60 -36.10 -0.31 -0.77 16
5 C -0.19 -2.01 9.76 -37.85 -0.37 -2.38 16
6 C 0.52 5.72 8.28 34.26 0.28 6.00 16
7 O -0.52 -7.22 17.01 -19.29 -0.33 -7.54 16
8 O -0.51 -4.33 13.44 -40.77 -0.55 -4.88 16
9 N -1.11 -16.30 5.46 -5.89 -0.03 -16.34 16
10 S 2.69 50.89 5.71 -107.50 -0.61 50.27 16
11 O -0.98 -19.47 16.60 -57.17 -0.95 -20.41 16
12 O -0.97 -21.15 17.26 -57.17 -0.99 -22.14 16
13 C -0.64 -13.60 5.05 -39.66 -0.20 -13.80 16
14 C -0.16 -3.25 8.59 -39.29 -0.34 -3.58 16
15 C -0.10 -2.10 10.02 -39.66 -0.40 -2.50 16
16 C -0.19 -4.18 9.80 -38.87 -0.38 -4.56 16
17 C 0.09 2.25 5.58 -106.82 -0.60 1.66 16
18 C -0.46 -11.30 9.05 -37.74 -0.34 -11.64 16
19 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16
20 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16
21 N -0.79 -18.97 10.97 55.55 0.61 -18.36 16
22 Si 0.91 17.77 29.60 -169.99 -5.03 12.74 16
23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16
24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16
25 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16
26 C -0.05 -1.31 8.16 -38.87 -0.32 -1.62 16
27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
29 H 0.09 1.39 6.17 -51.93 -0.32 1.07 16
30 H 0.14 1.45 7.49 -52.48 -0.39 1.06 16
31 H 0.15 1.34 7.87 -52.48 -0.41 0.92 16
32 H 0.41 1.61 9.11 45.56 0.42 2.02 16
33 H 0.42 5.32 8.83 -34.48 -0.30 5.02 16
34 H 0.11 1.88 7.60 -52.49 -0.40 1.49 16
35 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16
36 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16
37 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16
38 H 0.14 3.47 5.71 -52.49 -0.30 3.17 16
LS Contribution 346.74 15.07 5.23 5.23
Total: -1.00 -31.58 346.74 -8.91 -40.49
By element:
Atomic # 1 Polarization: 15.75 SS G_CDS: -3.33 Total: 12.43 kcal
Atomic # 6 Polarization: -28.56 SS G_CDS: -2.93 Total: -31.49 kcal
Atomic # 7 Polarization: -35.27 SS G_CDS: 0.58 Total: -34.69 kcal
Atomic # 8 Polarization: -52.17 SS G_CDS: -2.81 Total: -54.98 kcal
Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal
Atomic # 16 Polarization: 50.89 SS G_CDS: -0.61 Total: 50.27 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -31.58 -8.91 -40.49 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001604059137.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.983 kcal
(2) G-P(sol) polarization free energy of solvation -31.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.475 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds