Wall clock time and date at job start Tue Mar 31 2020 14:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.46978 * 2 1 4 4 C 1.50701 * 109.47078 * 120.00073 * 2 1 3 5 5 C 1.33078 * 120.00016 * 255.58836 * 4 2 1 6 6 C 1.46948 * 120.00163 * 10.82337 * 5 4 2 7 7 O 1.21533 * 119.99870 * 6.88022 * 6 5 4 8 8 O 1.34795 * 120.00020 * 186.88702 * 6 5 4 9 9 N 1.46502 * 109.46909 * 239.99829 * 2 1 3 10 10 S 1.65595 * 119.99599 * 95.00108 * 9 2 1 11 11 O 1.42098 * 106.40392 * 178.54021 * 10 9 2 12 12 O 1.42100 * 106.40518 * 311.45914 * 10 9 2 13 13 C 1.76201 * 107.21853 * 65.00042 * 10 9 2 14 14 C 1.38657 * 119.87492 * 269.71979 * 13 10 9 15 15 C 1.38616 * 120.49951 * 179.72147 * 14 13 10 16 16 C 1.37636 * 120.24723 * 0.55287 * 15 14 13 17 17 C 1.40699 * 119.74660 * 359.73564 * 16 15 14 18 18 C 1.41394 * 120.24529 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99751 * 208.29705 * 18 17 16 20 20 C 1.39944 * 120.00192 * 28.30309 * 18 17 16 21 21 N 1.30823 * 119.99703 * 14.94366 * 20 18 17 22 22 Si 1.86798 * 120.00121 * 194.94876 * 20 18 17 23 23 H 1.48499 * 109.47276 * 89.99830 * 22 20 18 24 24 H 1.48504 * 109.47067 * 209.99717 * 22 20 18 25 25 H 1.48495 * 109.47286 * 329.99501 * 22 20 18 26 26 C 1.37595 * 119.87465 * 90.00216 * 13 10 9 27 27 H 1.09002 * 109.47006 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47000 * 299.99969 * 1 2 3 29 29 H 1.09000 * 109.47195 * 59.99566 * 1 2 3 30 30 H 1.08004 * 119.99891 * 75.58723 * 4 2 1 31 31 H 1.08004 * 120.00148 * 190.83173 * 5 4 2 32 32 H 0.96702 * 117.00190 * 180.02562 * 8 6 5 33 33 H 0.96998 * 120.00058 * 275.00291 * 9 2 1 34 34 H 1.08004 * 119.75057 * 0.02562 * 14 13 10 35 35 H 1.08002 * 119.87694 * 180.26341 * 15 14 13 36 36 H 1.08000 * 120.12401 * 179.74325 * 16 15 14 37 37 H 0.97011 * 120.00072 * 180.02562 * 21 20 18 38 38 H 1.08003 * 120.13171 * 359.97356 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.5246 -0.0096 2.2491 6 6 2.3640 1.4507 2.2820 7 8 1.6763 2.0053 1.4474 8 8 2.9795 2.1751 3.2377 9 7 2.0184 -0.6907 -1.1962 10 16 2.4122 0.1771 -2.5504 11 8 2.8776 -0.7634 -3.5085 12 8 1.3247 1.0593 -2.7921 13 6 3.7928 1.1909 -2.1371 14 6 3.5870 2.4673 -1.6359 15 6 4.6636 3.2737 -1.3011 16 6 5.9509 2.8185 -1.4739 17 6 6.1718 1.5273 -1.9874 18 6 7.4899 1.0488 -2.1687 19 1 7.6983 0.3179 -2.9360 20 6 8.5245 1.5221 -1.3537 21 7 8.2450 2.1697 -0.2520 22 14 10.3043 1.2293 -1.8393 23 1 10.7815 2.3593 -2.6763 24 1 11.1413 1.1312 -0.6165 25 1 10.4053 -0.0354 -2.6109 26 6 5.0711 0.7152 -2.3184 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.9929 -1.7883 1.2856 31 1 3.0423 -0.5141 3.0516 32 1 2.8438 3.1323 3.2188 33 1 2.1109 -1.6562 -1.1949 34 1 2.5802 2.8341 -1.5008 35 1 4.4916 4.2646 -0.9076 36 1 6.7883 3.4500 -1.2163 37 1 8.9622 2.4982 0.3128 38 1 5.2292 -0.2778 -2.7128 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:05 Heat of formation + Delta-G solvation = -125.219192 kcal Electronic energy + Delta-G solvation = -25923.658473 eV Core-core repulsion = 22051.483420 eV Total energy + Delta-G solvation = -3872.175053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26520 -37.65589 -37.26510 -36.55472 -35.66712 -35.27644 -33.80839 -32.60191 -30.06237 -29.80943 -29.27306 -25.47225 -24.96989 -22.29918 -21.88904 -21.00038 -20.07139 -18.92109 -18.23285 -17.88910 -17.16816 -16.79298 -15.91333 -15.57637 -15.23954 -15.02671 -14.77019 -14.47041 -14.04276 -13.52914 -13.49615 -13.35153 -13.21025 -12.69277 -12.57630 -12.32422 -11.92477 -11.79362 -11.58209 -11.52042 -11.39419 -11.36542 -11.23696 -11.14368 -10.99441 -10.87759 -10.60716 -10.04501 -9.83174 -9.72513 -9.61596 -9.36754 -9.14893 -8.04361 -7.66285 -6.89641 -4.53676 0.89747 1.17441 2.19228 2.63517 2.89147 3.00600 3.04657 3.06746 3.17799 3.61558 3.84421 4.24291 4.45128 4.61218 4.94418 5.06670 5.26053 5.35587 5.38410 5.42312 5.55355 5.88274 5.92799 6.03285 6.07191 6.20589 6.35229 6.41235 6.64411 6.65747 6.75116 6.84831 7.04561 7.20036 7.24461 7.38487 7.72119 7.81787 7.93935 7.95102 8.40742 8.67958 8.72679 10.06994 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.005015 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.766732 B = 5582.272459 C = 6808.135896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.138 0.862 4 C -0.049 4.049 5 C -0.188 4.188 6 C 0.508 3.492 7 O -0.503 6.503 8 O -0.513 6.513 9 N -1.117 6.117 10 S 2.689 3.311 11 O -0.973 6.973 12 O -0.970 6.970 13 C -0.636 4.636 14 C -0.139 4.139 15 C -0.123 4.123 16 C -0.111 4.111 17 C 0.092 3.908 18 C -0.464 4.464 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.800 5.800 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.412 0.588 33 H 0.410 0.590 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.282 0.718 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -3.662 7.680 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.155 0.845 4 C -0.069 4.069 5 C -0.207 4.207 6 C 0.354 3.646 7 O -0.394 6.394 8 O -0.324 6.324 9 N -0.874 5.874 10 S 2.784 3.216 11 O -0.964 6.964 12 O -0.960 6.960 13 C -0.728 4.728 14 C -0.161 4.161 15 C -0.142 4.142 16 C -0.131 4.131 17 C 0.089 3.911 18 C -0.494 4.494 19 H 0.100 0.900 20 C -0.142 4.142 21 N -0.426 5.426 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.141 4.141 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.271 0.729 33 H 0.243 0.757 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.093 0.907 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.217 -3.702 6.861 12.072 hybrid contribution 1.546 0.329 0.529 1.666 sum -7.672 -3.373 7.390 11.173 Atomic orbital electron populations 1.22126 0.93766 1.01884 1.03679 1.20773 0.95449 0.98281 0.81697 0.84500 1.24072 0.89620 1.00617 0.92556 1.21905 1.05765 0.89715 1.03361 1.21343 0.76185 0.89301 0.77780 1.90805 1.38441 1.73286 1.36877 1.84604 1.69229 1.26125 1.52434 1.55834 1.82485 1.18950 1.30146 1.01693 0.74335 0.73361 0.72164 1.93536 1.82472 1.62683 1.57693 1.93521 1.52822 1.66136 1.83518 1.29763 1.14243 1.09896 1.18938 1.20153 0.98020 0.93567 1.04312 1.20804 0.93496 0.98381 1.01533 1.21600 0.95344 0.95674 1.00482 1.17680 0.92635 0.90828 0.89998 1.19589 0.91611 1.22280 1.15917 0.89974 1.25896 1.01820 0.93036 0.93473 1.69769 1.35353 1.28471 1.09013 0.86239 0.81009 0.80081 0.79018 1.19219 1.20251 1.18489 1.20818 0.90677 0.98802 1.03824 0.92622 0.91415 0.90548 0.84117 0.83652 0.72948 0.75650 0.87372 0.88452 0.86006 0.90693 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.27 37.16 0.34 -1.62 16 2 C 0.14 2.04 2.32 -69.08 -0.16 1.88 16 3 H 0.14 2.33 4.07 -52.48 -0.21 2.12 16 4 C -0.05 -0.54 9.09 -36.10 -0.33 -0.87 16 5 C -0.19 -2.17 10.14 -37.85 -0.38 -2.56 16 6 C 0.51 6.93 8.11 34.26 0.28 7.20 16 7 O -0.50 -7.96 13.41 -19.29 -0.26 -8.22 16 8 O -0.51 -6.02 13.44 -40.75 -0.55 -6.56 16 9 N -1.12 -16.44 5.46 -5.88 -0.03 -16.48 16 10 S 2.69 51.68 5.65 -107.50 -0.61 51.08 16 11 O -0.97 -20.62 17.27 -57.17 -0.99 -21.61 16 12 O -0.97 -20.20 16.52 -57.17 -0.94 -21.14 16 13 C -0.64 -14.17 5.81 -39.66 -0.23 -14.40 16 14 C -0.14 -3.11 8.92 -39.29 -0.35 -3.46 16 15 C -0.12 -2.79 10.02 -39.66 -0.40 -3.19 16 16 C -0.11 -2.78 8.66 -38.87 -0.34 -3.12 16 17 C 0.09 2.38 5.54 -106.82 -0.59 1.79 16 18 C -0.46 -11.94 9.05 -37.74 -0.34 -12.28 16 19 H 0.08 2.04 7.89 -52.49 -0.41 1.63 16 20 C 0.08 1.81 5.17 -17.34 -0.09 1.72 16 21 N -0.80 -19.79 11.05 55.55 0.61 -19.18 16 22 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 26 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.81 7.78 -51.93 -0.40 0.40 16 29 H 0.08 1.09 7.64 -51.93 -0.40 0.70 16 30 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.41 3.20 9.11 45.56 0.42 3.62 16 33 H 0.41 4.74 8.83 -34.47 -0.30 4.44 16 34 H 0.11 2.27 7.59 -52.48 -0.40 1.87 16 35 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.12 3.09 6.35 -52.49 -0.33 2.76 16 37 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.11 2.59 7.60 -52.48 -0.40 2.19 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -32.81 342.54 -8.85 -41.66 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -3.27 Total: 14.33 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -2.95 Total: -32.15 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.58 Total: -35.65 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -2.74 Total: -57.54 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 51.68 SS G_CDS: -0.61 Total: 51.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.81 -8.85 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.558 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds