Wall clock time and date at job start Tue Mar 31 2020 14:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.46978 * 2 1 4 4 C 1.50701 * 109.47078 * 120.00073 * 2 1 3 5 5 C 1.33078 * 120.00016 * 255.58836 * 4 2 1 6 6 C 1.46948 * 120.00163 * 10.82337 * 5 4 2 7 7 O 1.21533 * 119.99870 * 6.88022 * 6 5 4 8 8 O 1.34795 * 120.00020 * 186.88702 * 6 5 4 9 9 N 1.46502 * 109.46909 * 239.99829 * 2 1 3 10 10 S 1.65595 * 119.99599 * 95.00108 * 9 2 1 11 11 O 1.42098 * 106.40392 * 178.54021 * 10 9 2 12 12 O 1.42100 * 106.40518 * 311.45914 * 10 9 2 13 13 C 1.76201 * 107.21853 * 65.00042 * 10 9 2 14 14 C 1.38657 * 119.87492 * 269.71979 * 13 10 9 15 15 C 1.38616 * 120.49951 * 179.72147 * 14 13 10 16 16 C 1.37636 * 120.24723 * 0.55287 * 15 14 13 17 17 C 1.40699 * 119.74660 * 359.73564 * 16 15 14 18 18 C 1.41394 * 120.24529 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99751 * 208.29705 * 18 17 16 20 20 C 1.39944 * 120.00192 * 28.30309 * 18 17 16 21 21 N 1.30823 * 119.99703 * 14.94366 * 20 18 17 22 22 Si 1.86798 * 120.00121 * 194.94876 * 20 18 17 23 23 H 1.48499 * 109.47276 * 89.99830 * 22 20 18 24 24 H 1.48504 * 109.47067 * 209.99717 * 22 20 18 25 25 H 1.48495 * 109.47286 * 329.99501 * 22 20 18 26 26 C 1.37595 * 119.87465 * 90.00216 * 13 10 9 27 27 H 1.09002 * 109.47006 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47000 * 299.99969 * 1 2 3 29 29 H 1.09000 * 109.47195 * 59.99566 * 1 2 3 30 30 H 1.08004 * 119.99891 * 75.58723 * 4 2 1 31 31 H 1.08004 * 120.00148 * 190.83173 * 5 4 2 32 32 H 0.96702 * 117.00190 * 180.02562 * 8 6 5 33 33 H 0.96998 * 120.00058 * 275.00291 * 9 2 1 34 34 H 1.08004 * 119.75057 * 0.02562 * 14 13 10 35 35 H 1.08002 * 119.87694 * 180.26341 * 15 14 13 36 36 H 1.08000 * 120.12401 * 179.74325 * 16 15 14 37 37 H 0.97011 * 120.00072 * 180.02562 * 21 20 18 38 38 H 1.08003 * 120.13171 * 359.97356 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.5246 -0.0096 2.2491 6 6 2.3640 1.4507 2.2820 7 8 1.6763 2.0053 1.4474 8 8 2.9795 2.1751 3.2377 9 7 2.0184 -0.6907 -1.1962 10 16 2.4122 0.1771 -2.5504 11 8 2.8776 -0.7634 -3.5085 12 8 1.3247 1.0593 -2.7921 13 6 3.7928 1.1909 -2.1371 14 6 3.5870 2.4673 -1.6359 15 6 4.6636 3.2737 -1.3011 16 6 5.9509 2.8185 -1.4739 17 6 6.1718 1.5273 -1.9874 18 6 7.4899 1.0488 -2.1687 19 1 7.6983 0.3179 -2.9360 20 6 8.5245 1.5221 -1.3537 21 7 8.2450 2.1697 -0.2520 22 14 10.3043 1.2293 -1.8393 23 1 10.7815 2.3593 -2.6763 24 1 11.1413 1.1312 -0.6165 25 1 10.4053 -0.0354 -2.6109 26 6 5.0711 0.7152 -2.3184 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.9929 -1.7883 1.2856 31 1 3.0423 -0.5141 3.0516 32 1 2.8438 3.1323 3.2188 33 1 2.1109 -1.6562 -1.1949 34 1 2.5802 2.8341 -1.5008 35 1 4.4916 4.2646 -0.9076 36 1 6.7883 3.4500 -1.2163 37 1 8.9622 2.4982 0.3128 38 1 5.2292 -0.2778 -2.7128 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:05 Heat of formation + Delta-G solvation = -149.341214 kcal Electronic energy + Delta-G solvation = -25924.704482 eV Core-core repulsion = 22051.483420 eV Total energy + Delta-G solvation = -3873.221062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27601 -39.48233 -38.48065 -38.02152 -36.92779 -36.72479 -35.64912 -33.62659 -31.92566 -31.63549 -30.35319 -27.34897 -25.93642 -23.71170 -23.35301 -22.81819 -21.18346 -20.39978 -19.55458 -19.23658 -18.50042 -18.06922 -17.73391 -16.88643 -16.63537 -16.58376 -16.39361 -15.73100 -15.25834 -15.16076 -15.00463 -14.52155 -14.33181 -14.23862 -13.76768 -13.67155 -13.55400 -13.31523 -13.18581 -13.09277 -13.03361 -12.84121 -12.80066 -12.63022 -12.37620 -12.25258 -12.20992 -11.55981 -11.42486 -11.17224 -11.04052 -10.72431 -10.38756 -9.88041 -9.54683 -8.71308 -6.46614 -0.53959 0.13283 0.37362 0.81791 1.38147 1.45812 1.50902 1.87022 2.18409 2.20528 2.31846 2.55487 2.76490 3.43925 3.50745 3.65328 4.14141 4.24571 4.32187 4.32736 4.37986 4.40938 4.58233 4.80362 4.86060 4.90457 4.99781 5.03907 5.16059 5.20045 5.35132 5.39063 5.48507 5.53384 5.71328 5.85273 5.92503 6.06963 6.16459 6.50790 6.79440 6.83288 7.02846 8.27537 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.005015 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.766732 B = 5582.272459 C = 6808.135896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 H 0.111 0.889 4 C -0.043 4.043 5 C -0.196 4.196 6 C 0.497 3.503 7 O -0.533 6.533 8 O -0.514 6.514 9 N -1.099 6.099 10 S 2.717 3.283 11 O -0.992 6.992 12 O -0.984 6.984 13 C -0.642 4.642 14 C -0.141 4.141 15 C -0.123 4.123 16 C -0.132 4.132 17 C 0.065 3.935 18 C -0.499 4.499 19 H 0.079 0.921 20 C 0.039 3.961 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.259 1.259 26 C -0.138 4.138 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.184 0.816 31 H 0.173 0.827 32 H 0.426 0.574 33 H 0.428 0.572 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.291 0.709 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.845 -4.991 8.695 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 H 0.128 0.872 4 C -0.063 4.063 5 C -0.216 4.216 6 C 0.345 3.655 7 O -0.426 6.426 8 O -0.327 6.327 9 N -0.861 5.861 10 S 2.809 3.191 11 O -0.982 6.982 12 O -0.974 6.974 13 C -0.731 4.731 14 C -0.162 4.162 15 C -0.143 4.143 16 C -0.152 4.152 17 C 0.062 3.938 18 C -0.528 4.528 19 H 0.097 0.903 20 C -0.177 4.177 21 N -0.452 5.452 22 Si 0.804 3.196 23 H -0.188 1.188 24 H -0.190 1.190 25 H -0.183 1.183 26 C -0.159 4.159 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.201 0.799 31 H 0.191 0.809 32 H 0.287 0.713 33 H 0.266 0.734 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.319 -5.007 7.895 13.200 hybrid contribution 1.450 0.779 0.282 1.670 sum -7.870 -4.228 8.177 12.110 Atomic orbital electron populations 1.22093 0.92533 1.03598 1.02908 1.20884 0.96578 0.97441 0.82520 0.87184 1.24288 0.88662 1.02527 0.90798 1.22240 1.06131 0.88633 1.04586 1.21909 0.75734 0.90419 0.77453 1.90799 1.39810 1.74056 1.37929 1.84582 1.68807 1.27455 1.51861 1.55380 1.81660 1.19689 1.29367 1.00859 0.73070 0.72681 0.72471 1.93505 1.82655 1.62806 1.59279 1.93504 1.52591 1.67068 1.84218 1.30265 1.14982 1.10538 1.17306 1.20377 0.98426 0.93632 1.03744 1.21078 0.92852 0.99528 1.00797 1.21573 0.95921 0.95653 1.02042 1.18032 0.93524 0.91558 0.90719 1.19824 0.92577 1.23519 1.16920 0.90298 1.26698 1.05693 0.92332 0.92927 1.69805 1.37037 1.28678 1.09640 0.85177 0.75558 0.79917 0.78960 1.18786 1.18991 1.18296 1.20904 0.91227 0.98985 1.04772 0.89647 0.90900 0.92632 0.79865 0.80934 0.71345 0.73441 0.86153 0.86020 0.87102 0.89826 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.27 71.98 0.67 -2.88 16 2 C 0.13 3.48 2.32 44.25 0.10 3.59 16 3 H 0.11 3.67 4.07 -11.06 -0.05 3.63 16 4 C -0.04 -0.83 9.09 24.53 0.22 -0.61 16 5 C -0.20 -4.09 10.14 23.40 0.24 -3.85 16 6 C 0.50 13.10 8.11 70.10 0.57 13.67 16 7 O -0.53 -16.71 13.41 19.73 0.26 -16.45 16 8 O -0.51 -11.63 13.44 -57.07 -0.77 -12.40 16 9 N -1.10 -30.22 5.46 -172.51 -0.94 -31.16 16 10 S 2.72 102.42 5.65 -56.49 -0.32 102.10 16 11 O -0.99 -41.33 17.27 -128.00 -2.21 -43.54 16 12 O -0.98 -40.33 16.52 -128.00 -2.11 -42.44 16 13 C -0.64 -28.70 5.81 22.22 0.13 -28.57 16 14 C -0.14 -6.31 8.92 22.46 0.20 -6.11 16 15 C -0.12 -5.67 10.02 22.22 0.22 -5.45 16 16 C -0.13 -6.77 8.66 22.73 0.20 -6.58 16 17 C 0.06 3.45 5.54 -21.29 -0.12 3.34 16 18 C -0.50 -26.30 9.05 23.46 0.21 -26.09 16 19 H 0.08 4.04 7.89 -2.91 -0.02 4.02 16 20 C 0.04 1.88 5.17 85.26 0.44 2.32 16 21 N -0.83 -41.21 11.05 21.83 0.24 -40.97 16 22 Si 0.98 36.97 29.59 68.60 2.03 39.00 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 26 C -0.14 -6.80 9.26 22.73 0.21 -6.59 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.62 7.78 -2.39 -0.02 1.60 16 29 H 0.05 1.52 7.64 -2.39 -0.02 1.50 16 30 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.43 6.43 9.11 -74.06 -0.67 5.75 16 33 H 0.43 8.69 8.83 -96.75 -0.85 7.83 16 34 H 0.12 5.03 7.59 -2.91 -0.02 5.01 16 35 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.11 5.82 6.35 -2.91 -0.02 5.80 16 37 H 0.29 13.06 8.30 -92.70 -0.77 12.29 16 38 H 0.11 5.39 7.60 -2.91 -0.02 5.37 16 Total: -1.00 -71.76 342.54 -0.96 -72.72 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -0.43 Total: 36.95 kcal Atomic # 6 Polarization: -67.11 SS G_CDS: 3.29 Total: -63.82 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -0.70 Total: -72.13 kcal Atomic # 8 Polarization: -110.00 SS G_CDS: -4.83 Total: -114.82 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 102.42 SS G_CDS: -0.32 Total: 102.10 kcal Total: -71.76 -0.96 -72.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.621 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds