Wall clock time and date at job start Tue Mar 31 2020 13:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00092 * 2 1 4 4 H 1.48501 * 109.47337 * 270.00230 * 3 2 1 5 5 H 1.48503 * 109.47209 * 30.00913 * 3 2 1 6 6 H 1.48507 * 109.47117 * 150.00144 * 3 2 1 7 7 C 1.38735 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99573 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99999 * 179.97438 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25662 * 10 9 7 12 12 C 1.38136 * 120.20068 * 179.69570 * 11 10 9 13 13 C 1.38083 * 120.24270 * 0.59899 * 12 11 10 14 14 C 1.39629 * 120.03871 * 359.67840 * 13 12 11 15 15 C 1.47865 * 120.09952 * 180.02562 * 14 13 12 16 16 O 1.21553 * 120.00105 * 179.97438 * 15 14 13 17 17 N 1.34773 * 120.00337 * 359.97438 * 15 14 13 18 18 O 1.41595 * 120.00517 * 180.02562 * 17 15 14 19 19 C 1.42900 * 114.00302 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47180 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47134 * 180.02562 * 20 19 18 22 22 C 1.50698 * 109.47039 * 179.97438 * 21 20 19 23 23 O 1.20824 * 120.00412 * 0.02562 * 22 21 20 24 24 O 1.34229 * 119.99949 * 179.97438 * 22 21 20 25 25 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 26 26 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.89882 * 359.97193 * 11 10 9 28 28 H 1.08002 * 119.87655 * 180.27610 * 12 11 10 29 29 H 1.08002 * 119.98159 * 179.70047 * 13 12 11 30 30 H 0.97001 * 119.99868 * 359.97438 * 17 15 14 31 31 H 1.08999 * 109.47348 * 299.99988 * 19 18 17 32 32 H 1.08999 * 109.46849 * 59.99986 * 19 18 17 33 33 H 1.09007 * 109.46973 * 300.00035 * 20 19 18 34 34 H 1.09007 * 109.47213 * 59.99679 * 20 19 18 35 35 H 1.08999 * 109.47332 * 300.00091 * 21 20 19 36 36 H 1.09001 * 109.47413 * 60.00178 * 21 20 19 37 37 H 0.96703 * 117.00208 * 180.02562 * 24 22 21 38 38 H 1.07996 * 120.11843 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0099 -1.2015 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2016 -0.0012 10 6 4.0778 -2.9298 -0.1565 11 6 4.2973 -3.7032 0.9801 12 6 4.5313 -5.0596 0.8631 13 6 4.5612 -5.6553 -0.3822 14 6 4.3481 -4.8882 -1.5293 15 6 4.3793 -5.5248 -2.8635 16 8 4.1930 -4.8554 -3.8608 17 7 4.6143 -6.8473 -2.9739 18 8 4.6447 -7.4569 -4.2515 19 6 4.9044 -8.8617 -4.2193 20 6 4.9137 -9.4115 -5.6471 21 6 5.1911 -10.9157 -5.6125 22 6 5.1996 -11.4573 -7.0188 23 8 5.0043 -10.7163 -7.9529 24 8 5.4251 -12.7630 -7.2338 25 6 4.1056 -3.5202 -1.4128 26 1 -0.4850 0.8400 0.0004 27 1 4.2803 -3.2421 1.9565 28 1 4.6965 -5.6554 1.7487 29 1 4.7493 -6.7152 -0.4691 30 1 4.7633 -7.3815 -2.1780 31 1 5.8736 -9.0415 -3.7541 32 1 4.1262 -9.3619 -3.6428 33 1 3.9442 -9.2318 -6.1119 34 1 5.6916 -8.9113 -6.2241 35 1 6.1603 -11.0959 -5.1475 36 1 4.4129 -11.4156 -5.0358 37 1 5.4213 -13.0637 -8.1528 38 1 3.9395 -2.9220 -2.2965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:47 Heat of formation + Delta-G solvation = -131.718959 kcal Electronic energy + Delta-G solvation = -23020.583525 eV Core-core repulsion = 19148.126621 eV Total energy + Delta-G solvation = -3872.456904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28424 -41.15669 -39.37368 -38.44752 -37.18964 -35.23929 -34.70985 -33.66094 -32.03278 -31.46696 -28.39688 -27.91225 -25.08066 -23.97522 -23.68375 -22.11546 -21.52797 -20.17643 -19.59122 -19.03372 -18.58456 -17.59721 -17.56740 -17.19761 -17.12860 -16.77908 -16.68658 -15.88056 -15.86215 -15.62688 -14.98948 -14.81205 -14.70205 -14.48629 -14.01899 -13.93049 -13.62968 -13.45259 -13.15436 -13.07104 -12.70730 -12.65173 -12.49817 -12.49399 -12.29389 -11.84924 -11.70641 -11.69225 -11.34009 -11.21466 -10.96418 -10.20212 -9.91477 -9.76079 -9.13771 -8.53265 -6.27401 -0.25606 0.19211 0.64769 1.07845 1.20647 1.32366 1.44358 1.64239 1.74453 2.14570 2.22113 2.57758 2.84975 2.95128 3.25386 3.52335 3.85332 3.86040 3.89705 3.97554 4.03104 4.29764 4.34817 4.39679 4.41437 4.51681 4.60511 4.68525 4.88363 4.94818 5.08616 5.14051 5.27842 5.42721 5.61343 5.66608 5.69373 5.80248 6.11133 6.22364 6.89229 6.97311 7.12622 8.60153 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025578 B = 0.001931 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.414342 B =14496.905828 C =15111.713477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.040 3.960 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.225 1.225 7 C -0.525 4.525 8 H 0.048 0.952 9 S -0.114 6.114 10 C -0.119 4.119 11 C -0.054 4.054 12 C -0.117 4.117 13 C -0.056 4.056 14 C -0.146 4.146 15 C 0.574 3.426 16 O -0.574 6.574 17 N -0.573 5.573 18 O -0.175 6.175 19 C 0.026 3.974 20 C -0.105 4.105 21 C -0.099 4.099 22 C 0.480 3.520 23 O -0.563 6.563 24 O -0.513 6.513 25 C -0.041 4.041 26 H 0.278 0.722 27 H 0.143 0.857 28 H 0.184 0.816 29 H 0.181 0.819 30 H 0.429 0.571 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.427 0.573 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.256 -28.701 -1.891 32.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.148 1.148 7 C -0.672 4.672 8 H 0.066 0.934 9 S 0.120 5.880 10 C -0.230 4.230 11 C -0.074 4.074 12 C -0.136 4.136 13 C -0.074 4.074 14 C -0.151 4.151 15 C 0.363 3.637 16 O -0.453 6.453 17 N -0.276 5.276 18 O -0.180 6.180 19 C -0.050 4.050 20 C -0.144 4.144 21 C -0.136 4.136 22 C 0.325 3.675 23 O -0.454 6.454 24 O -0.327 6.327 25 C -0.063 4.063 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.201 0.799 29 H 0.198 0.802 30 H 0.275 0.725 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.289 0.711 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.593 -26.800 -2.536 31.110 hybrid contribution -1.323 -0.481 -1.131 1.806 sum 14.270 -27.281 -3.667 31.005 Atomic orbital electron populations 1.70033 1.07623 1.29169 1.48798 1.25737 0.95439 1.02644 0.92692 0.85775 0.80905 0.78845 0.80246 1.18908 1.18148 1.14832 1.22406 0.89939 0.96243 1.58651 0.93395 1.82642 1.07051 1.02541 1.95759 1.22070 1.06062 0.99130 0.95723 1.22148 0.92737 0.94836 0.97712 1.21608 0.99480 0.93431 0.99102 1.21810 0.94391 1.00915 0.90309 1.19526 1.09853 0.93641 0.92081 1.18440 0.75919 0.80282 0.89067 1.90793 1.50798 1.63821 1.39882 1.46982 1.74380 1.06386 0.99869 1.90625 1.95022 1.24332 1.08038 1.23274 1.03760 0.79161 0.98827 1.21179 1.03663 0.94533 0.95002 1.21223 1.08872 0.93633 0.89906 1.23884 0.70624 0.79827 0.93186 1.90778 1.47345 1.60047 1.47240 1.84488 1.83065 1.26178 1.38923 1.21628 0.93494 0.94225 0.96932 0.91295 0.83898 0.79907 0.80163 0.72485 0.88499 0.88874 0.91841 0.91569 0.84014 0.84222 0.71147 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.18 13.97 21.64 0.30 -56.88 16 2 C 0.04 2.37 5.50 84.84 0.47 2.84 16 3 Si 0.92 44.18 27.73 68.60 1.90 46.08 16 4 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.22 -10.18 6.74 99.48 0.67 -9.51 16 7 C -0.53 -31.49 10.01 67.94 0.68 -30.81 16 8 H 0.05 3.17 8.02 -2.91 -0.02 3.15 16 9 S -0.11 -5.62 19.38 -56.49 -1.09 -6.71 16 10 C -0.12 -4.90 5.45 22.65 0.12 -4.78 16 11 C -0.05 -1.66 9.79 22.48 0.22 -1.44 16 12 C -0.12 -2.37 10.02 22.21 0.22 -2.15 16 13 C -0.06 -1.08 9.54 22.57 0.22 -0.86 16 14 C -0.15 -4.49 5.87 -20.11 -0.12 -4.61 16 15 C 0.57 18.73 7.92 86.79 0.69 19.42 16 16 O -0.57 -25.60 16.75 13.48 0.23 -25.38 16 17 N -0.57 -12.30 6.34 -175.59 -1.11 -13.42 16 18 O -0.17 -4.10 11.11 -21.42 -0.24 -4.34 16 19 C 0.03 0.26 6.23 71.98 0.45 0.71 16 20 C -0.10 -1.26 4.87 30.59 0.15 -1.11 16 21 C -0.10 -0.46 5.81 29.85 0.17 -0.28 16 22 C 0.48 5.51 8.33 71.24 0.59 6.11 16 23 O -0.56 -12.09 16.74 21.97 0.37 -11.72 16 24 O -0.51 -3.39 13.42 -51.41 -0.69 -4.08 16 25 C -0.04 -1.67 9.34 22.70 0.21 -1.45 16 26 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.18 1.24 6.40 -2.91 -0.02 1.22 16 30 H 0.43 4.36 6.57 -92.71 -0.61 3.75 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 1.07 8.10 -2.38 -0.02 1.05 16 34 H 0.07 1.07 8.10 -2.38 -0.02 1.05 16 35 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.43 0.01 9.10 -74.06 -0.67 -0.67 16 38 H 0.11 4.99 7.65 -2.91 -0.02 4.97 16 Total: -1.00 -94.43 356.01 3.54 -90.90 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -0.20 Total: 3.95 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.07 Total: -18.41 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -0.81 Total: -70.29 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.33 Total: -45.52 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Atomic # 16 Polarization: -5.62 SS G_CDS: -1.09 Total: -6.71 kcal Total: -94.43 3.54 -90.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.823 kcal (2) G-P(sol) polarization free energy of solvation -94.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds