Wall clock time and date at job start Tue Mar 31 2020 14:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86801 * 119.99716 * 2 1 4 4 H 1.48499 * 109.46826 * 269.99952 * 3 2 1 5 5 H 1.48502 * 109.47258 * 29.99779 * 3 2 1 6 6 H 1.48492 * 109.47150 * 150.00052 * 3 2 1 7 7 C 1.40307 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99265 * 201.20967 * 7 2 1 9 9 C 1.40530 * 120.00277 * 21.21079 * 7 2 1 10 10 C 1.44192 * 123.71511 * 14.01013 * 9 7 2 11 11 C 1.32766 * 114.43258 * 180.29244 * 10 9 7 12 12 S 1.75472 * 111.36014 * 359.73589 * 11 10 9 13 13 C 1.39546 * 123.71801 * 193.80605 * 9 7 2 14 14 C 1.46239 * 125.22374 * 359.97438 * 13 9 7 15 15 O 1.21754 * 120.00338 * 48.63851 * 14 13 9 16 16 N 1.34782 * 119.99454 * 228.63936 * 14 13 9 17 17 C 1.47140 * 120.98715 * 356.41667 * 16 14 13 18 18 C 1.53299 * 108.38687 * 129.44351 * 17 16 14 19 19 O 1.42962 * 109.21890 * 52.30185 * 18 17 16 20 20 C 1.42966 * 114.16924 * 297.42016 * 19 18 17 21 21 C 1.47152 * 120.97500 * 176.39839 * 16 14 13 22 22 H 1.09000 * 109.68321 * 110.83374 * 21 16 14 23 23 C 1.53005 * 109.68675 * 350.31283 * 21 16 14 24 24 C 1.50698 * 109.46729 * 85.64537 * 23 21 16 25 25 O 1.20828 * 120.00276 * 0.02562 * 24 23 21 26 26 O 1.34226 * 120.00036 * 179.97438 * 24 23 21 27 27 H 0.96999 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.08001 * 122.78731 * 0.02750 * 10 9 7 29 29 H 1.07993 * 124.32239 * 179.77303 * 11 10 9 30 30 H 1.09001 * 109.68772 * 249.16892 * 17 16 14 31 31 H 1.09002 * 109.68137 * 9.72489 * 17 16 14 32 32 H 1.09001 * 109.51450 * 172.22813 * 18 17 16 33 33 H 1.08997 * 109.51360 * 292.38351 * 18 17 16 34 34 H 1.08996 * 109.50881 * 302.65512 * 20 19 18 35 35 H 1.08997 * 109.50835 * 182.50781 * 20 19 18 36 36 H 1.08999 * 109.47043 * 205.64964 * 23 21 16 37 37 H 1.08999 * 109.46755 * 325.64749 * 23 21 16 38 38 H 0.96698 * 117.00584 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4403 0.7000 7 6 2.0080 -1.2151 0.0005 8 1 3.0332 -1.2465 0.3390 9 6 1.3768 -2.3911 -0.4392 10 6 0.1346 -2.4071 -1.1712 11 6 -0.2994 -3.6206 -1.4900 12 16 0.7991 -4.8632 -0.9170 13 6 1.8853 -3.6719 -0.2192 14 6 3.1284 -3.9759 0.4885 15 8 3.3548 -3.4628 1.5692 16 7 4.0235 -4.8240 -0.0557 17 6 3.7381 -5.5164 -1.3223 18 6 4.9287 -5.3094 -2.2655 19 8 6.1328 -5.6864 -1.5931 20 6 6.4291 -4.8986 -0.4374 21 6 5.3152 -5.0846 0.5992 22 1 5.3345 -6.1058 0.9796 23 6 5.5154 -4.1008 1.7538 24 6 4.8539 -4.6418 2.9951 25 8 4.2816 -5.7053 2.9600 26 8 4.9015 -3.9427 4.1399 27 1 -0.4850 0.8400 -0.0004 28 1 -0.4007 -1.5068 -1.4345 29 1 -1.2117 -3.8179 -2.0332 30 1 3.5986 -6.5811 -1.1354 31 1 2.8365 -5.1010 -1.7727 32 1 4.8001 -5.9261 -3.1550 33 1 4.9863 -4.2600 -2.5542 34 1 6.4921 -3.8477 -0.7197 35 1 7.3798 -5.2197 -0.0120 36 1 6.5816 -3.9690 1.9382 37 1 5.0702 -3.1403 1.4940 38 1 4.4624 -4.3301 4.9095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189279.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:16 Heat of formation + Delta-G solvation = -144.766755 kcal Electronic energy + Delta-G solvation = -26598.320081 eV Core-core repulsion = 22725.297382 eV Total energy + Delta-G solvation = -3873.022699 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91077 -40.52693 -39.16886 -37.88245 -37.01204 -35.59288 -34.95987 -34.19099 -30.89825 -30.03688 -28.41844 -27.68279 -24.85234 -24.20963 -22.88649 -22.34762 -21.02653 -20.50578 -19.11646 -18.58454 -17.85831 -17.82223 -17.54191 -17.09528 -16.84854 -16.68382 -16.21006 -15.89179 -15.87946 -15.42531 -15.28705 -14.42548 -14.27569 -14.11951 -13.82371 -13.72084 -13.51220 -13.28854 -13.16219 -12.81821 -12.76194 -12.45466 -12.37983 -12.26650 -12.08698 -12.03697 -11.85833 -11.54254 -11.38473 -11.16046 -10.95069 -10.06934 -9.47156 -9.33967 -8.90158 -8.88626 -6.42300 0.40053 1.22944 1.31536 1.35910 1.44238 1.48216 1.67179 2.00561 2.07216 2.14249 2.27338 2.48690 2.86920 3.26468 3.63517 3.72655 3.96748 4.10105 4.20079 4.32371 4.35330 4.40018 4.56605 4.64493 4.67101 4.78152 4.86423 4.90345 4.97310 5.03926 5.27577 5.34928 5.54261 5.71979 5.72857 5.83827 6.07317 6.26431 6.52743 6.64260 6.78845 7.10933 7.52820 8.04866 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.005874 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.291682 B = 4765.777623 C = 5623.040904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.042 3.958 3 Si 0.985 3.015 4 H -0.250 1.250 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.426 4.426 8 H 0.071 0.929 9 C 0.116 3.884 10 C -0.130 4.130 11 C -0.201 4.201 12 S 0.012 5.988 13 C -0.480 4.480 14 C 0.621 3.379 15 O -0.584 6.584 16 N -0.617 5.617 17 C 0.064 3.936 18 C 0.055 3.945 19 O -0.385 6.385 20 C 0.061 3.939 21 C 0.119 3.881 22 H 0.075 0.925 23 C -0.116 4.116 24 C 0.511 3.489 25 O -0.568 6.568 26 O -0.516 6.516 27 H 0.301 0.699 28 H 0.141 0.859 29 H 0.173 0.827 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -3.325 -3.835 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.174 1.174 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.457 4.457 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.162 4.162 11 C -0.335 4.335 12 S 0.268 5.732 13 C -0.598 4.598 14 C 0.416 3.584 15 O -0.469 6.469 16 N -0.351 5.351 17 C -0.060 4.060 18 C -0.022 4.022 19 O -0.303 6.303 20 C -0.016 4.016 21 C 0.016 3.984 22 H 0.093 0.907 23 C -0.153 4.153 24 C 0.357 3.643 25 O -0.460 6.460 26 O -0.328 6.328 27 H 0.112 0.888 28 H 0.159 0.841 29 H 0.190 0.810 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 8.911 -4.750 -3.768 10.778 hybrid contribution -0.913 1.962 1.046 2.404 sum 7.998 -2.788 -2.722 8.897 Atomic orbital electron populations 1.69705 1.09134 1.32042 1.30467 1.26991 0.95557 1.04879 0.90465 0.85145 0.79044 0.75113 0.80251 1.17378 1.18444 1.18873 1.19507 0.99436 0.92040 1.34672 0.91118 1.18141 0.90205 0.91589 0.89516 1.21651 0.96932 0.97884 0.99719 1.25483 1.04545 0.96104 1.07375 1.82683 1.17688 1.11150 1.61642 1.22721 1.07773 0.95738 1.33531 1.17047 0.82141 0.75990 0.83217 1.90521 1.78507 1.55346 1.22547 1.48064 1.16810 1.45644 1.24540 1.22803 1.01366 0.97273 0.84532 1.23068 0.82638 1.01482 0.94986 1.87911 1.42002 1.59049 1.41321 1.23123 0.97128 0.96489 0.84896 1.21875 0.84407 0.99092 0.93042 0.90662 1.21754 1.02557 1.02608 0.88380 1.23252 0.75787 0.80667 0.84622 1.90619 1.43980 1.25777 1.85652 1.84462 1.73263 1.53609 1.21513 0.88759 0.84114 0.80985 0.91300 0.87616 0.84794 0.92707 0.91907 0.84250 0.84857 0.86069 0.72294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.51 10.87 21.89 0.24 -37.27 16 2 C 0.04 2.00 5.29 85.37 0.45 2.45 16 3 Si 0.99 35.86 29.61 68.60 2.03 37.89 16 4 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 5 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.43 -22.55 8.66 23.33 0.20 -22.34 16 8 H 0.07 3.90 7.21 -2.91 -0.02 3.88 16 9 C 0.12 6.10 5.74 -20.89 -0.12 5.98 16 10 C -0.13 -6.18 9.11 22.61 0.21 -5.97 16 11 C -0.20 -8.36 11.07 66.64 0.74 -7.62 16 12 S 0.01 0.49 20.35 -56.49 -1.15 -0.66 16 13 C -0.48 -23.99 5.39 24.67 0.13 -23.86 16 14 C 0.62 30.00 6.77 86.32 0.58 30.58 16 15 O -0.58 -30.56 10.46 6.78 0.07 -30.49 16 16 N -0.62 -24.11 3.02 -798.65 -2.41 -26.53 16 17 C 0.06 2.11 6.04 86.36 0.52 2.63 16 18 C 0.06 1.44 6.99 72.08 0.50 1.94 16 19 O -0.38 -10.18 10.74 -148.98 -1.60 -11.78 16 20 C 0.06 1.49 6.16 72.08 0.44 1.93 16 21 C 0.12 3.88 2.80 44.97 0.13 4.01 16 22 H 0.08 2.61 7.14 -2.39 -0.02 2.59 16 23 C -0.12 -3.80 4.93 29.85 0.15 -3.66 16 24 C 0.51 19.33 5.93 71.24 0.42 19.75 16 25 O -0.57 -24.98 16.19 26.44 0.43 -24.55 16 26 O -0.52 -16.85 13.42 -51.38 -0.69 -17.54 16 27 H 0.30 12.55 8.29 -92.71 -0.77 11.78 16 28 H 0.14 6.72 6.22 -2.91 -0.02 6.70 16 29 H 0.17 5.77 8.06 -2.91 -0.02 5.75 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.11 3.79 4.48 -11.03 -0.05 3.75 16 32 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.13 3.00 7.92 -2.39 -0.02 2.98 16 37 H 0.12 4.82 5.54 -15.62 -0.09 4.73 16 38 H 0.42 10.13 9.10 -74.06 -0.67 9.45 16 Total: -1.00 -70.18 325.52 1.62 -68.56 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.35 Total: 36.54 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.36 Total: 5.82 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -2.17 Total: -63.80 kcal Atomic # 8 Polarization: -82.58 SS G_CDS: -1.79 Total: -84.37 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -1.15 Total: -0.66 kcal Total: -70.18 1.62 -68.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189279.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.203 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds