Wall clock time and date at job start Tue Mar 31 2020 13:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48493 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47077 * 59.99183 * 3 2 1 6 6 H 1.48498 * 109.46693 * 299.99370 * 3 2 1 7 7 C 1.39941 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00324 * 202.01773 * 7 2 1 9 9 C 1.41397 * 120.00169 * 22.02442 * 7 2 1 10 10 C 1.40733 * 120.24310 * 31.24478 * 9 7 2 11 11 C 1.37592 * 119.74703 * 179.69445 * 10 9 7 12 12 C 1.38660 * 120.24861 * 0.60553 * 11 10 9 13 13 C 1.38615 * 120.49669 * 359.66791 * 12 11 10 14 14 C 1.37645 * 120.25030 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.12667 * 179.97438 * 14 13 12 16 16 O 1.42103 * 106.39884 * 98.83512 * 15 14 13 17 17 O 1.42091 * 106.40176 * 231.75392 * 15 14 13 18 18 N 1.65597 * 107.21985 * 345.29721 * 15 14 13 19 19 C 1.46504 * 119.99980 * 69.03093 * 18 15 14 20 20 H 1.08997 * 112.84907 * 342.63435 * 19 18 15 21 21 C 1.53778 * 113.61560 * 113.83182 * 19 18 15 22 22 C 1.53781 * 87.08367 * 89.11366 * 21 19 18 23 23 C 1.53791 * 113.61245 * 211.43594 * 19 18 15 24 24 H 1.08995 * 113.60993 * 156.33200 * 23 19 18 25 25 C 1.50703 * 113.61094 * 25.43743 * 23 19 18 26 26 O 1.20825 * 120.00295 * 359.97438 * 25 23 19 27 27 O 1.34234 * 119.99482 * 180.02562 * 25 23 19 28 28 H 0.96999 * 120.00606 * 184.45847 * 1 2 3 29 29 H 1.08002 * 120.12859 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.88235 * 180.31471 * 11 10 9 31 31 H 1.07999 * 119.75402 * 179.69642 * 12 11 10 32 32 H 1.08000 * 119.87269 * 180.02562 * 13 12 11 33 33 H 0.97003 * 120.00109 * 249.03170 * 18 15 14 34 34 H 1.08999 * 113.61469 * 203.66324 * 21 19 18 35 35 H 1.08995 * 113.61546 * 334.56863 * 21 19 18 36 36 H 1.08997 * 113.61619 * 139.98003 * 22 21 19 37 37 H 1.09002 * 113.61911 * 270.80550 * 22 21 19 38 38 H 0.96698 * 116.99643 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3965 1.2124 6 1 1.8837 2.3963 -1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0289 -1.2460 0.3512 9 6 1.3783 -2.3920 -0.4581 10 6 0.4001 -2.3270 -1.4679 11 6 -0.2015 -3.4823 -1.9110 12 6 0.1436 -4.7061 -1.3577 13 6 1.1015 -4.7814 -0.3587 14 6 1.7209 -3.6392 0.0956 15 16 2.9377 -3.7386 1.3661 16 8 4.2006 -3.7038 0.7157 17 8 2.5519 -2.8045 2.3650 18 7 2.8070 -5.2393 2.0537 19 6 3.1913 -6.4302 1.2918 20 1 3.2549 -6.2444 0.2197 21 6 4.4185 -7.1585 1.8646 22 6 3.4373 -7.9647 2.7318 23 6 2.3748 -7.6825 1.6527 24 1 2.3484 -8.4299 0.8598 25 6 1.0103 -7.3727 2.2125 26 8 0.6556 -6.2247 2.3392 27 8 0.1894 -8.3724 2.5712 28 1 -0.4851 -0.8374 0.0653 29 1 0.1260 -1.3743 -1.8965 30 1 -0.9487 -3.4355 -2.6893 31 1 -0.3373 -5.6074 -1.7081 32 1 1.3629 -5.7399 0.0648 33 1 2.4759 -5.3300 2.9610 34 1 4.9499 -7.7630 1.1296 35 1 5.0805 -6.5119 2.4406 36 1 3.6988 -9.0190 2.8219 37 1 3.2197 -7.4990 3.6930 38 1 -0.6755 -8.1244 2.9255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:46 Heat of formation + Delta-G solvation = -122.248354 kcal Electronic energy + Delta-G solvation = -26620.261180 eV Core-core repulsion = 22748.214953 eV Total energy + Delta-G solvation = -3872.046228 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90771 -38.52273 -37.77951 -36.09719 -35.98241 -34.84956 -34.04155 -32.46042 -30.16768 -29.43868 -27.52359 -25.31589 -25.09319 -22.20392 -21.77915 -21.26231 -19.70690 -19.07295 -18.21910 -17.96090 -16.99873 -16.81719 -16.17258 -15.73136 -15.21316 -15.00663 -14.76826 -14.20412 -14.13845 -13.92988 -13.72406 -13.39210 -12.86129 -12.79367 -12.54061 -12.21126 -11.83357 -11.62786 -11.55370 -11.36796 -11.16800 -11.09591 -11.03090 -11.00835 -10.94593 -10.58698 -10.43592 -10.39423 -10.36583 -9.78577 -9.42974 -9.15071 -8.95088 -8.14737 -7.74764 -7.38449 -4.76369 1.46833 2.16719 2.29171 2.68926 2.96296 3.15308 3.25636 3.37680 3.79225 3.97084 4.08469 4.24536 4.41139 4.54821 4.72413 4.78564 5.11653 5.19237 5.21959 5.40505 5.52174 5.56821 5.67569 5.83006 5.87168 5.92133 6.04102 6.24612 6.35870 6.47270 6.60544 6.91512 7.17875 7.30085 7.37336 7.45497 7.59952 7.66220 7.88455 7.89334 8.03051 8.41453 8.64623 9.90198 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.005073 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.163488 B = 5518.234730 C = 6273.791958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.045 3.955 3 Si 1.071 2.929 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.168 3.832 10 C -0.205 4.205 11 C -0.058 4.058 12 C -0.264 4.264 13 C 0.010 3.990 14 C -0.766 4.766 15 S 2.708 3.292 16 O -0.984 6.984 17 O -0.962 6.962 18 N -1.095 6.095 19 C 0.153 3.847 20 H 0.110 0.890 21 C -0.153 4.153 22 C -0.119 4.119 23 C -0.123 4.123 24 H 0.134 0.866 25 C 0.478 3.522 26 O -0.483 6.483 27 O -0.522 6.522 28 H 0.302 0.698 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.415 0.585 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 -15.097 3.526 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.179 4.179 3 Si 0.893 3.107 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.100 0.900 9 C 0.162 3.838 10 C -0.225 4.225 11 C -0.077 4.077 12 C -0.284 4.284 13 C -0.009 4.009 14 C -0.860 4.860 15 S 2.804 3.196 16 O -0.974 6.974 17 O -0.952 6.952 18 N -0.851 5.851 19 C 0.043 3.957 20 H 0.128 0.872 21 C -0.192 4.192 22 C -0.156 4.156 23 C -0.144 4.144 24 H 0.152 0.848 25 C 0.318 3.682 26 O -0.368 6.368 27 O -0.334 6.334 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.251 0.749 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.956 -12.542 3.461 13.599 hybrid contribution -1.526 -2.061 0.129 2.568 sum 2.430 -14.603 3.589 15.233 Atomic orbital electron populations 1.70408 1.08094 1.34565 1.27158 1.27127 0.95587 1.04474 0.90737 0.83570 0.75861 0.72855 0.78386 1.19512 1.19715 1.19588 1.20873 1.01666 0.94061 1.37187 0.89968 1.16950 0.88809 0.90226 0.87767 1.21283 1.03265 0.97277 1.00676 1.20788 0.96678 0.93224 0.96992 1.20391 1.06088 0.96412 1.05491 1.20251 0.92867 0.94848 0.92969 1.29765 1.29566 1.00300 1.26334 1.01139 0.74125 0.70446 0.73927 1.93502 1.41427 1.85603 1.76906 1.93529 1.84062 1.58372 1.59231 1.55518 1.81589 1.22015 1.25968 1.21556 0.93141 0.84105 0.96869 0.87199 1.23412 0.96877 0.99018 0.99890 1.22896 0.94064 1.01680 0.96996 1.23134 0.87954 1.01781 1.01508 0.84799 1.23274 0.86627 0.83097 0.75179 1.90831 1.74916 1.21727 1.49318 1.84526 1.31059 1.41511 1.76353 0.88423 0.87137 0.88605 0.88882 0.88242 0.74919 0.88324 0.89491 0.89833 0.89521 0.73362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.18 12.52 55.55 0.70 -20.49 16 2 C 0.04 1.18 4.98 -17.34 -0.09 1.09 16 3 Si 1.07 22.68 29.99 -169.99 -5.10 17.59 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.51 -14.38 7.58 -37.74 -0.29 -14.67 16 8 H 0.08 2.34 7.09 -52.49 -0.37 1.96 16 9 C 0.17 4.61 5.19 -106.83 -0.55 4.05 16 10 C -0.21 -5.27 7.90 -38.88 -0.31 -5.57 16 11 C -0.06 -1.32 10.02 -39.66 -0.40 -1.72 16 12 C -0.26 -5.75 10.05 -39.29 -0.39 -6.15 16 13 C 0.01 0.22 8.80 -39.66 -0.35 -0.13 16 14 C -0.77 -19.18 5.89 -38.87 -0.23 -19.41 16 15 S 2.71 62.12 4.58 -107.50 -0.49 61.63 16 16 O -0.98 -23.93 17.69 -57.17 -1.01 -24.94 16 17 O -0.96 -25.26 16.90 -57.17 -0.97 -26.22 16 18 N -1.09 -18.45 3.69 -4.19 -0.02 -18.47 16 19 C 0.15 2.02 2.51 -67.11 -0.17 1.85 16 20 H 0.11 1.50 7.08 -51.93 -0.37 1.13 16 21 C -0.15 -1.49 7.88 -25.92 -0.20 -1.70 16 22 C -0.12 -0.99 7.48 -25.78 -0.19 -1.18 16 23 C -0.12 -1.24 4.04 -90.81 -0.37 -1.61 16 24 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 25 C 0.48 5.83 7.34 36.01 0.26 6.09 16 26 O -0.48 -7.84 13.24 -18.75 -0.25 -8.09 16 27 O -0.52 -4.98 13.42 -39.27 -0.53 -5.51 16 28 H 0.30 8.41 6.60 -40.82 -0.27 8.14 16 29 H 0.11 2.84 6.81 -52.49 -0.36 2.48 16 30 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.10 1.84 3.64 -52.49 -0.19 1.64 16 33 H 0.42 6.48 7.35 -34.47 -0.25 6.23 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.41 2.53 9.10 45.56 0.41 2.94 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -35.61 327.48 -9.15 -44.76 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -3.15 Total: 13.84 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: -3.27 Total: -39.04 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.68 Total: -38.95 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -2.75 Total: -64.75 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.10 Total: 17.59 kcal Atomic # 16 Polarization: 62.12 SS G_CDS: -0.49 Total: 61.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.61 -9.15 -44.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.489 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds