Wall clock time and date at job start Tue Mar 31 2020 13:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48493 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47077 * 59.99183 * 3 2 1 6 6 H 1.48498 * 109.46693 * 299.99370 * 3 2 1 7 7 C 1.39941 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00324 * 202.01773 * 7 2 1 9 9 C 1.41397 * 120.00169 * 22.02442 * 7 2 1 10 10 C 1.40733 * 120.24310 * 31.24478 * 9 7 2 11 11 C 1.37592 * 119.74703 * 179.69445 * 10 9 7 12 12 C 1.38660 * 120.24861 * 0.60553 * 11 10 9 13 13 C 1.38615 * 120.49669 * 359.66791 * 12 11 10 14 14 C 1.37645 * 120.25030 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.12667 * 179.97438 * 14 13 12 16 16 O 1.42103 * 106.39884 * 98.83512 * 15 14 13 17 17 O 1.42091 * 106.40176 * 231.75392 * 15 14 13 18 18 N 1.65597 * 107.21985 * 345.29721 * 15 14 13 19 19 C 1.46504 * 119.99980 * 69.03093 * 18 15 14 20 20 H 1.08997 * 112.84907 * 342.63435 * 19 18 15 21 21 C 1.53778 * 113.61560 * 113.83182 * 19 18 15 22 22 C 1.53781 * 87.08367 * 89.11366 * 21 19 18 23 23 C 1.53791 * 113.61245 * 211.43594 * 19 18 15 24 24 H 1.08995 * 113.60993 * 156.33200 * 23 19 18 25 25 C 1.50703 * 113.61094 * 25.43743 * 23 19 18 26 26 O 1.20825 * 120.00295 * 359.97438 * 25 23 19 27 27 O 1.34234 * 119.99482 * 180.02562 * 25 23 19 28 28 H 0.96999 * 120.00606 * 184.45847 * 1 2 3 29 29 H 1.08002 * 120.12859 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.88235 * 180.31471 * 11 10 9 31 31 H 1.07999 * 119.75402 * 179.69642 * 12 11 10 32 32 H 1.08000 * 119.87269 * 180.02562 * 13 12 11 33 33 H 0.97003 * 120.00109 * 249.03170 * 18 15 14 34 34 H 1.08999 * 113.61469 * 203.66324 * 21 19 18 35 35 H 1.08995 * 113.61546 * 334.56863 * 21 19 18 36 36 H 1.08997 * 113.61619 * 139.98003 * 22 21 19 37 37 H 1.09002 * 113.61911 * 270.80550 * 22 21 19 38 38 H 0.96698 * 116.99643 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3965 1.2124 6 1 1.8837 2.3963 -1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0289 -1.2460 0.3512 9 6 1.3783 -2.3920 -0.4581 10 6 0.4001 -2.3270 -1.4679 11 6 -0.2015 -3.4823 -1.9110 12 6 0.1436 -4.7061 -1.3577 13 6 1.1015 -4.7814 -0.3587 14 6 1.7209 -3.6392 0.0956 15 16 2.9377 -3.7386 1.3661 16 8 4.2006 -3.7038 0.7157 17 8 2.5519 -2.8045 2.3650 18 7 2.8070 -5.2393 2.0537 19 6 3.1913 -6.4302 1.2918 20 1 3.2549 -6.2444 0.2197 21 6 4.4185 -7.1585 1.8646 22 6 3.4373 -7.9647 2.7318 23 6 2.3748 -7.6825 1.6527 24 1 2.3484 -8.4299 0.8598 25 6 1.0103 -7.3727 2.2125 26 8 0.6556 -6.2247 2.3392 27 8 0.1894 -8.3724 2.5712 28 1 -0.4851 -0.8374 0.0653 29 1 0.1260 -1.3743 -1.8965 30 1 -0.9487 -3.4355 -2.6893 31 1 -0.3373 -5.6074 -1.7081 32 1 1.3629 -5.7399 0.0648 33 1 2.4759 -5.3300 2.9610 34 1 4.9499 -7.7630 1.1296 35 1 5.0805 -6.5119 2.4406 36 1 3.6988 -9.0190 2.8219 37 1 3.2197 -7.4990 3.6930 38 1 -0.6755 -8.1244 2.9255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:45 Heat of formation + Delta-G solvation = -149.834243 kcal Electronic energy + Delta-G solvation = -26621.457394 eV Core-core repulsion = 22748.214953 eV Total energy + Delta-G solvation = -3873.242442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.83325 -39.68694 -39.41134 -37.98343 -36.93713 -36.77586 -35.95719 -33.75174 -32.05893 -31.31862 -28.34835 -27.27639 -26.01119 -23.64277 -23.16465 -23.02220 -20.86046 -20.52884 -19.94632 -19.04378 -18.53570 -18.06608 -17.73772 -16.94388 -16.75157 -16.44320 -16.15794 -15.80354 -15.71554 -15.46710 -15.09805 -14.73602 -14.54308 -14.16003 -13.78979 -13.58277 -13.48721 -13.09739 -13.07413 -12.97473 -12.93318 -12.81661 -12.57818 -12.38428 -12.31321 -12.05078 -11.78528 -11.68775 -11.46548 -11.34407 -11.14825 -11.05446 -10.31142 -10.03211 -9.67475 -9.41331 -6.81359 -0.30353 0.39057 0.79486 1.25656 1.40841 1.55549 1.73188 2.13732 2.22668 2.30103 2.50271 2.85959 3.15549 3.23503 3.48153 3.77341 3.82163 4.02178 4.12520 4.18112 4.26878 4.47748 4.53052 4.70087 4.72891 4.76617 4.89653 4.99179 5.01719 5.14025 5.20597 5.40476 5.42822 5.51540 5.58618 5.68044 5.75230 5.90983 6.08788 6.12914 6.46670 6.67119 7.07071 7.84482 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.005073 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.163488 B = 5518.234730 C = 6273.791958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.009 3.991 3 Si 1.110 2.890 4 H -0.267 1.267 5 H -0.260 1.260 6 H -0.247 1.247 7 C -0.556 4.556 8 H 0.063 0.937 9 C 0.138 3.862 10 C -0.233 4.233 11 C -0.054 4.054 12 C -0.256 4.256 13 C 0.007 3.993 14 C -0.785 4.785 15 S 2.724 3.276 16 O -1.006 7.006 17 O -1.006 7.006 18 N -1.078 6.078 19 C 0.116 3.884 20 H 0.103 0.897 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.113 4.113 24 H 0.172 0.828 25 C 0.480 3.520 26 O -0.533 6.533 27 O -0.511 6.511 28 H 0.286 0.714 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.422 0.578 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -18.602 3.082 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.208 4.208 3 Si 0.925 3.075 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.171 1.171 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.133 3.867 10 C -0.253 4.253 11 C -0.072 4.072 12 C -0.275 4.275 13 C -0.012 4.012 14 C -0.878 4.878 15 S 2.819 3.181 16 O -0.996 6.996 17 O -0.996 6.996 18 N -0.839 5.839 19 C 0.008 3.992 20 H 0.121 0.879 21 C -0.185 4.185 22 C -0.143 4.143 23 C -0.134 4.134 24 H 0.189 0.811 25 C 0.323 3.677 26 O -0.422 6.422 27 O -0.325 6.325 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.260 0.740 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.937 -16.095 3.008 16.840 hybrid contribution -1.584 -1.342 0.259 2.092 sum 2.353 -17.437 3.267 17.896 Atomic orbital electron populations 1.70514 1.08442 1.33298 1.29887 1.28489 0.95771 1.07285 0.89273 0.83158 0.74875 0.69629 0.79822 1.19144 1.18449 1.17055 1.20942 1.01362 0.95784 1.40326 0.91918 1.17366 0.89730 0.91146 0.88461 1.21300 1.04468 0.98141 1.01399 1.21241 0.96327 0.92583 0.97082 1.20989 1.04885 0.97600 1.04054 1.20752 0.92242 0.95501 0.92738 1.30247 1.30002 1.00635 1.26900 1.00378 0.73339 0.71392 0.73023 1.93455 1.42147 1.86570 1.77396 1.93455 1.84466 1.61420 1.60252 1.54950 1.81599 1.21290 1.26087 1.22118 0.96835 0.83857 0.96389 0.87875 1.23471 0.95815 0.98692 1.00520 1.22892 0.92118 1.03416 0.95879 1.23276 0.86754 1.00242 1.03096 0.81078 1.23686 0.87308 0.82590 0.74090 1.90835 1.76069 1.23708 1.51636 1.84490 1.31828 1.40377 1.75763 0.90198 0.88373 0.85046 0.84510 0.84527 0.74042 0.85296 0.90652 0.86406 0.90180 0.71638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.56 12.52 21.83 0.27 -45.29 16 2 C 0.01 0.53 4.98 85.26 0.42 0.95 16 3 Si 1.11 47.20 29.99 68.60 2.06 49.26 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.56 -33.28 7.58 23.46 0.18 -33.10 16 8 H 0.06 3.85 7.09 -2.91 -0.02 3.82 16 9 C 0.14 7.89 5.19 -21.29 -0.11 7.78 16 10 C -0.23 -12.31 7.90 22.73 0.18 -12.13 16 11 C -0.05 -2.38 10.02 22.22 0.22 -2.16 16 12 C -0.26 -10.43 10.05 22.46 0.23 -10.21 16 13 C 0.01 0.28 8.80 22.22 0.20 0.48 16 14 C -0.79 -40.22 5.89 22.73 0.13 -40.08 16 15 S 2.72 129.32 4.58 -56.49 -0.26 129.07 16 16 O -1.01 -50.60 17.69 -128.00 -2.26 -52.86 16 17 O -1.01 -55.83 16.90 -128.00 -2.16 -58.00 16 18 N -1.08 -36.00 3.69 -167.18 -0.62 -36.62 16 19 C 0.12 2.80 2.51 45.52 0.11 2.92 16 20 H 0.10 2.60 7.08 -2.39 -0.02 2.59 16 21 C -0.15 -2.38 7.88 31.12 0.25 -2.14 16 22 C -0.11 -1.31 7.48 31.21 0.23 -1.08 16 23 C -0.11 -1.82 4.04 -10.92 -0.04 -1.86 16 24 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 25 C 0.48 10.25 7.34 71.24 0.52 10.77 16 26 O -0.53 -16.55 13.24 21.97 0.29 -16.26 16 27 O -0.51 -7.87 13.42 -51.45 -0.69 -8.56 16 28 H 0.29 16.88 6.60 -92.71 -0.61 16.27 16 29 H 0.10 5.30 6.81 -2.91 -0.02 5.28 16 30 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 31 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 32 H 0.14 4.72 3.64 -2.91 -0.01 4.71 16 33 H 0.42 13.16 7.35 -96.74 -0.71 12.45 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.42 3.97 9.10 -74.06 -0.67 3.29 16 Total: -1.00 -83.29 327.48 -0.94 -84.24 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.09 Total: 34.88 kcal Atomic # 6 Polarization: -82.38 SS G_CDS: 2.52 Total: -79.86 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -0.34 Total: -81.91 kcal Atomic # 8 Polarization: -130.85 SS G_CDS: -4.83 Total: -135.68 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.06 Total: 49.26 kcal Atomic # 16 Polarization: 129.32 SS G_CDS: -0.26 Total: 129.07 kcal Total: -83.29 -0.94 -84.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.599 kcal (2) G-P(sol) polarization free energy of solvation -83.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds