Wall clock time and date at job start Tue Mar 31 2020 13:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99854 * 2 1 4 4 H 1.48504 * 109.46748 * 274.65635 * 3 2 1 5 5 H 1.48491 * 109.47277 * 34.65651 * 3 2 1 6 6 H 1.48497 * 109.47468 * 154.66145 * 3 2 1 7 7 C 1.39947 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99677 * 162.23754 * 7 2 1 9 9 C 1.41391 * 120.00154 * 342.23824 * 7 2 1 10 10 C 1.40710 * 120.24374 * 155.28957 * 9 7 2 11 11 C 1.37624 * 119.74281 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24861 * 0.02562 * 11 10 9 13 13 S 1.76203 * 119.74561 * 179.97438 * 12 11 10 14 14 O 1.42101 * 106.40410 * 336.45970 * 13 12 11 15 15 O 1.42105 * 106.39776 * 203.53642 * 13 12 11 16 16 N 1.65601 * 107.21522 * 90.00335 * 13 12 11 17 17 C 1.46496 * 120.00281 * 64.99776 * 16 13 12 18 18 H 1.09001 * 112.90878 * 343.25441 * 17 16 13 19 19 C 1.53786 * 113.61408 * 114.50316 * 17 16 13 20 20 C 1.53780 * 87.08134 * 89.11849 * 19 17 16 21 21 C 1.53780 * 87.08316 * 25.43074 * 20 19 17 22 22 H 1.09003 * 113.61647 * 89.11788 * 21 20 19 23 23 C 1.50700 * 113.61847 * 220.02096 * 21 20 19 24 24 O 1.20828 * 119.99801 * 97.49329 * 23 21 20 25 25 O 1.34227 * 119.99983 * 277.50038 * 23 21 20 26 26 C 1.38631 * 120.49938 * 0.25346 * 12 11 10 27 27 C 1.37615 * 120.25120 * 359.44896 * 26 12 11 28 28 H 0.96998 * 120.00109 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.12960 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.87152 * 179.97438 * 11 10 9 31 31 H 0.97005 * 119.99616 * 244.99060 * 16 13 12 32 32 H 1.08999 * 113.61369 * 203.66284 * 19 17 16 33 33 H 1.08992 * 113.61355 * 334.56744 * 19 17 16 34 34 H 1.08992 * 113.61797 * 139.97972 * 20 19 17 35 35 H 1.09002 * 113.61305 * 270.79867 * 20 19 17 36 36 H 0.96700 * 116.99762 * 179.97438 * 25 23 21 37 37 H 1.08002 * 119.86897 * 179.70435 * 26 12 11 38 38 H 1.07999 * 120.13142 * 180.27287 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6222 0.7961 6 1 3.5855 1.4139 0.5992 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2343 -0.2848 9 6 1.3516 -2.4071 0.3746 10 6 1.8220 -3.6493 -0.0900 11 6 1.1749 -4.8061 0.2801 12 6 0.0635 -4.7508 1.1069 13 16 -0.7552 -6.2401 1.5720 14 8 -0.4423 -7.1994 0.5714 15 8 -2.0865 -5.8770 1.9114 16 7 -0.0454 -6.7737 2.9698 17 6 -0.1558 -5.9806 4.1965 18 1 -0.4627 -4.9514 4.0101 19 6 -0.9636 -6.6728 5.3070 20 6 0.3610 -7.3021 5.7698 21 6 1.0679 -6.1009 5.1201 22 1 1.1929 -5.2519 5.7922 23 6 2.3375 -6.4671 4.3954 24 8 2.3230 -6.6358 3.1990 25 8 3.4843 -6.6060 5.0790 26 6 -0.4120 -3.5321 1.5659 27 6 0.2228 -2.3631 1.2136 28 1 -0.4850 0.8400 -0.0004 29 1 2.6868 -3.6946 -0.7351 30 1 1.5339 -5.7607 -0.0756 31 1 0.4434 -7.6116 2.9763 32 1 -1.3940 -5.9801 6.0303 33 1 -1.6853 -7.3992 4.9338 34 1 0.4714 -7.3399 6.8535 35 1 0.5837 -8.2543 5.2883 36 1 4.2724 -6.8421 4.5708 37 1 -1.2816 -3.5005 2.2057 38 1 -0.1467 -1.4151 1.5758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:49 Heat of formation + Delta-G solvation = -125.200510 kcal Electronic energy + Delta-G solvation = -25933.721916 eV Core-core repulsion = 22061.547673 eV Total energy + Delta-G solvation = -3872.174243 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79007 -38.44615 -37.50601 -36.37764 -35.92420 -35.04762 -33.98558 -32.38075 -30.20321 -29.39735 -27.44766 -25.76500 -25.02164 -22.13370 -21.45385 -21.07998 -19.66569 -19.02600 -18.01169 -17.56609 -17.22271 -16.82604 -16.37888 -15.64849 -15.47759 -15.12260 -14.88513 -14.27563 -14.11689 -13.81693 -13.32124 -13.17951 -12.88780 -12.73523 -12.38003 -12.13654 -11.82925 -11.69318 -11.58693 -11.41122 -11.40144 -11.31264 -11.24273 -11.16437 -10.95052 -10.82029 -10.50087 -10.40815 -10.31290 -9.69084 -9.58262 -9.44124 -8.94645 -7.89059 -7.62716 -7.09356 -4.74742 1.34330 2.25773 2.32545 2.89459 2.90978 2.97460 2.99212 3.05303 3.68517 3.73707 4.15992 4.29078 4.31983 4.56317 4.74039 4.78136 5.23125 5.29963 5.36745 5.44627 5.47360 5.58598 5.75572 5.80979 5.89165 6.14472 6.19738 6.37911 6.53899 6.72944 6.77057 6.97600 7.12074 7.37805 7.42082 7.49953 7.69176 7.82354 7.97256 8.03227 8.36829 8.56925 8.71049 9.82355 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.004280 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.852766 B = 6540.566767 C = 7240.538615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.439 4.439 8 H 0.086 0.914 9 C 0.141 3.859 10 C -0.242 4.242 11 C 0.014 3.986 12 C -0.780 4.780 13 S 2.696 3.304 14 O -0.985 6.985 15 O -0.985 6.985 16 N -1.092 6.092 17 C 0.161 3.839 18 H 0.110 0.890 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.119 4.119 22 H 0.133 0.867 23 C 0.482 3.518 24 O -0.487 6.487 25 O -0.523 6.523 26 C -0.021 4.021 27 C -0.183 4.183 28 H 0.288 0.712 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.412 0.588 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.407 0.593 37 H 0.102 0.898 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -7.515 12.602 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.137 3.863 10 C -0.262 4.262 11 C -0.006 4.006 12 C -0.876 4.876 13 S 2.794 3.206 14 O -0.976 6.976 15 O -0.975 6.975 16 N -0.846 5.846 17 C 0.051 3.949 18 H 0.128 0.872 19 C -0.193 4.193 20 C -0.158 4.158 21 C -0.140 4.140 22 H 0.151 0.849 23 C 0.322 3.678 24 O -0.372 6.372 25 O -0.335 6.335 26 C -0.041 4.041 27 C -0.204 4.204 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.247 0.753 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.265 0.735 37 H 0.120 0.880 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.252 -7.607 12.028 14.286 hybrid contribution 1.765 0.940 -0.355 2.031 sum 3.017 -6.667 11.672 13.777 Atomic orbital electron populations 1.69829 1.07884 1.30248 1.31033 1.26117 0.94856 1.02019 0.91871 0.86173 0.80748 0.79766 0.79479 1.19138 1.19618 1.18083 1.19903 0.98447 0.91243 1.37097 0.89608 1.17835 0.90034 0.92090 0.86305 1.21006 1.04370 0.92861 1.07979 1.20121 0.91407 0.97286 0.91781 1.29110 1.18217 1.15267 1.24971 1.01158 0.73449 0.74205 0.71748 1.93485 1.85509 1.61853 1.56734 1.93493 1.35228 1.84853 1.83948 1.55469 1.72310 1.33365 1.23492 1.21420 0.92678 0.96261 0.84532 0.87226 1.23423 0.96695 1.00903 0.98264 1.22856 0.95541 0.96287 1.01123 1.23027 0.88858 1.02223 0.99853 0.84903 1.23245 0.84606 0.73621 0.86299 1.90773 1.85616 1.45117 1.15680 1.84534 1.19953 1.82560 1.46468 1.20259 0.95910 0.91878 0.96035 1.21315 0.99800 0.96827 1.02420 0.90049 0.88397 0.87923 0.75274 0.88408 0.89669 0.89966 0.89688 0.73477 0.87970 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.65 10.97 55.55 0.61 -18.05 16 2 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.92 17.22 29.60 -169.99 -5.03 12.19 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -11.01 9.05 -37.74 -0.34 -11.35 16 8 H 0.09 2.04 7.91 -52.48 -0.41 1.62 16 9 C 0.14 3.66 5.57 -106.83 -0.60 3.06 16 10 C -0.24 -5.97 9.80 -38.87 -0.38 -6.36 16 11 C 0.01 0.34 9.49 -39.66 -0.38 -0.04 16 12 C -0.78 -17.79 5.97 -39.29 -0.23 -18.03 16 13 S 2.70 54.18 5.69 -107.50 -0.61 53.57 16 14 O -0.99 -22.16 17.26 -57.17 -0.99 -23.15 16 15 O -0.98 -21.28 17.01 -57.17 -0.97 -22.26 16 16 N -1.09 -16.96 4.05 -4.20 -0.02 -16.98 16 17 C 0.16 2.08 4.22 -67.12 -0.28 1.79 16 18 H 0.11 1.49 7.74 -51.93 -0.40 1.08 16 19 C -0.15 -1.47 7.88 -25.92 -0.20 -1.67 16 20 C -0.12 -1.00 7.46 -25.92 -0.19 -1.20 16 21 C -0.12 -1.25 4.23 -90.96 -0.38 -1.63 16 22 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 23 C 0.48 6.05 7.69 36.01 0.28 6.33 16 24 O -0.49 -7.84 14.49 -18.75 -0.27 -8.11 16 25 O -0.52 -5.23 13.42 -39.25 -0.53 -5.76 16 26 C -0.02 -0.48 9.17 -39.66 -0.36 -0.84 16 27 C -0.18 -4.63 8.70 -38.87 -0.34 -4.96 16 28 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 2.29 7.60 -52.48 -0.40 1.90 16 31 H 0.41 5.90 7.39 -34.47 -0.25 5.64 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.41 2.65 9.10 45.56 0.41 3.06 16 37 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 38 H 0.12 3.07 6.17 -52.49 -0.32 2.74 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -33.16 338.69 -9.66 -42.82 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -3.45 Total: 13.88 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: -3.51 Total: -33.27 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.59 Total: -35.03 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -2.76 Total: -59.27 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: 54.18 SS G_CDS: -0.61 Total: 53.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.16 -9.66 -42.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.378 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds