Wall clock time and date at job start Tue Mar 31 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99854 * 2 1 4 4 H 1.48504 * 109.46748 * 274.65635 * 3 2 1 5 5 H 1.48491 * 109.47277 * 34.65651 * 3 2 1 6 6 H 1.48497 * 109.47468 * 154.66145 * 3 2 1 7 7 C 1.39947 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99677 * 162.23754 * 7 2 1 9 9 C 1.41391 * 120.00154 * 342.23824 * 7 2 1 10 10 C 1.40710 * 120.24374 * 155.28957 * 9 7 2 11 11 C 1.37624 * 119.74281 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24861 * 0.02562 * 11 10 9 13 13 S 1.76203 * 119.74561 * 179.97438 * 12 11 10 14 14 O 1.42101 * 106.40410 * 336.45970 * 13 12 11 15 15 O 1.42105 * 106.39776 * 203.53642 * 13 12 11 16 16 N 1.65601 * 107.21522 * 90.00335 * 13 12 11 17 17 C 1.46496 * 120.00281 * 64.99776 * 16 13 12 18 18 H 1.09001 * 112.90878 * 343.25441 * 17 16 13 19 19 C 1.53786 * 113.61408 * 114.50316 * 17 16 13 20 20 C 1.53780 * 87.08134 * 89.11849 * 19 17 16 21 21 C 1.53780 * 87.08316 * 25.43074 * 20 19 17 22 22 H 1.09003 * 113.61647 * 89.11788 * 21 20 19 23 23 C 1.50700 * 113.61847 * 220.02096 * 21 20 19 24 24 O 1.20828 * 119.99801 * 97.49329 * 23 21 20 25 25 O 1.34227 * 119.99983 * 277.50038 * 23 21 20 26 26 C 1.38631 * 120.49938 * 0.25346 * 12 11 10 27 27 C 1.37615 * 120.25120 * 359.44896 * 26 12 11 28 28 H 0.96998 * 120.00109 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.12960 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.87152 * 179.97438 * 11 10 9 31 31 H 0.97005 * 119.99616 * 244.99060 * 16 13 12 32 32 H 1.08999 * 113.61369 * 203.66284 * 19 17 16 33 33 H 1.08992 * 113.61355 * 334.56744 * 19 17 16 34 34 H 1.08992 * 113.61797 * 139.97972 * 20 19 17 35 35 H 1.09002 * 113.61305 * 270.79867 * 20 19 17 36 36 H 0.96700 * 116.99762 * 179.97438 * 25 23 21 37 37 H 1.08002 * 119.86897 * 179.70435 * 26 12 11 38 38 H 1.07999 * 120.13142 * 180.27287 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6222 0.7961 6 1 3.5855 1.4139 0.5992 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2343 -0.2848 9 6 1.3516 -2.4071 0.3746 10 6 1.8220 -3.6493 -0.0900 11 6 1.1749 -4.8061 0.2801 12 6 0.0635 -4.7508 1.1069 13 16 -0.7552 -6.2401 1.5720 14 8 -0.4423 -7.1994 0.5714 15 8 -2.0865 -5.8770 1.9114 16 7 -0.0454 -6.7737 2.9698 17 6 -0.1558 -5.9806 4.1965 18 1 -0.4627 -4.9514 4.0101 19 6 -0.9636 -6.6728 5.3070 20 6 0.3610 -7.3021 5.7698 21 6 1.0679 -6.1009 5.1201 22 1 1.1929 -5.2519 5.7922 23 6 2.3375 -6.4671 4.3954 24 8 2.3230 -6.6358 3.1990 25 8 3.4843 -6.6060 5.0790 26 6 -0.4120 -3.5321 1.5659 27 6 0.2228 -2.3631 1.2136 28 1 -0.4850 0.8400 -0.0004 29 1 2.6868 -3.6946 -0.7351 30 1 1.5339 -5.7607 -0.0756 31 1 0.4434 -7.6116 2.9763 32 1 -1.3940 -5.9801 6.0303 33 1 -1.6853 -7.3992 4.9338 34 1 0.4714 -7.3399 6.8535 35 1 0.5837 -8.2543 5.2883 36 1 4.2724 -6.8421 4.5708 37 1 -1.2816 -3.5005 2.2057 38 1 -0.1467 -1.4151 1.5758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:48 Heat of formation + Delta-G solvation = -149.069124 kcal Electronic energy + Delta-G solvation = -25934.756937 eV Core-core repulsion = 22061.547673 eV Total energy + Delta-G solvation = -3873.209264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72154 -39.40696 -39.32070 -38.08583 -36.88658 -36.77344 -35.80360 -33.57055 -32.07030 -31.29098 -28.28332 -27.61700 -25.90876 -23.30751 -22.99093 -22.94893 -20.78597 -20.27493 -19.43350 -19.08572 -18.63483 -18.20403 -17.68649 -17.20356 -16.72349 -16.47593 -15.85543 -15.80435 -15.62072 -15.12931 -14.96319 -14.67800 -14.13343 -13.97388 -13.87932 -13.54852 -13.51077 -13.14070 -13.09340 -13.00613 -12.95876 -12.86632 -12.56818 -12.53618 -12.34424 -12.02958 -11.74703 -11.54797 -11.45860 -11.36547 -11.22233 -11.15866 -10.20300 -9.77565 -9.53939 -8.86828 -6.64976 -0.26460 0.50163 1.05744 1.30909 1.35236 1.41508 1.52388 2.11265 2.17765 2.30444 2.53175 2.94147 3.32118 3.51549 3.56261 3.64800 3.87736 4.07509 4.21880 4.30781 4.33932 4.54340 4.76799 4.81937 4.84959 4.92037 4.97913 5.05322 5.11128 5.17558 5.25186 5.49411 5.52294 5.59774 5.70889 5.76613 5.92292 6.15750 6.22224 6.48336 6.68394 6.81087 7.10826 8.08896 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.004280 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.852766 B = 6540.566767 C = 7240.538615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.089 0.911 9 C 0.113 3.887 10 C -0.262 4.262 11 C 0.006 3.994 12 C -0.790 4.790 13 S 2.726 3.274 14 O -1.010 7.010 15 O -0.998 6.998 16 N -1.077 6.077 17 C 0.129 3.871 18 H 0.098 0.902 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.117 4.117 22 H 0.158 0.842 23 C 0.481 3.519 24 O -0.532 6.532 25 O -0.515 6.515 26 C -0.020 4.020 27 C -0.204 4.204 28 H 0.299 0.701 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.420 0.580 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.421 0.579 37 H 0.121 0.879 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -7.391 14.801 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.178 1.178 7 C -0.497 4.497 8 H 0.107 0.893 9 C 0.109 3.891 10 C -0.282 4.282 11 C -0.014 4.014 12 C -0.883 4.883 13 S 2.821 3.179 14 O -1.001 7.001 15 O -0.988 6.988 16 N -0.836 5.836 17 C 0.020 3.980 18 H 0.116 0.884 19 C -0.183 4.183 20 C -0.143 4.143 21 C -0.137 4.137 22 H 0.176 0.824 23 C 0.324 3.676 24 O -0.421 6.421 25 O -0.328 6.328 26 C -0.040 4.040 27 C -0.225 4.225 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.282 0.718 37 H 0.139 0.861 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.537 -7.476 14.235 16.152 hybrid contribution 1.681 0.794 -0.971 2.097 sum 3.218 -6.683 13.264 15.197 Atomic orbital electron populations 1.69857 1.09412 1.31887 1.31048 1.27015 0.95554 1.05160 0.90620 0.85034 0.79213 0.74867 0.79752 1.18478 1.18397 1.17804 1.20188 0.98847 0.92185 1.38432 0.89337 1.18177 0.90809 0.92977 0.87090 1.21203 1.05150 0.93127 1.08713 1.20312 0.91777 0.97356 0.91929 1.29611 1.17577 1.16784 1.24287 1.00253 0.72890 0.72769 0.72012 1.93442 1.85792 1.62008 1.58838 1.93470 1.36078 1.84943 1.84345 1.54964 1.72156 1.33575 1.22942 1.21894 0.95824 0.95875 0.84418 0.88369 1.23450 0.96993 1.00900 0.96932 1.22847 0.93609 0.95075 1.02766 1.23181 0.86952 1.04335 0.99257 0.82426 1.23693 0.85623 0.72436 0.85843 1.90762 1.86360 1.47358 1.17583 1.84498 1.20105 1.81946 1.46267 1.20478 0.96121 0.91596 0.95796 1.21350 1.00557 0.97197 1.03352 0.88990 0.87732 0.87070 0.74287 0.85888 0.90069 0.86958 0.89832 0.71766 0.86125 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.36 10.97 21.83 0.24 -39.12 16 2 C 0.04 1.68 5.14 85.26 0.44 2.12 16 3 Si 0.99 34.92 29.60 68.60 2.03 36.95 16 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 6 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 7 C -0.47 -24.14 9.05 23.46 0.21 -23.93 16 8 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 9 C 0.11 6.07 5.57 -21.29 -0.12 5.95 16 10 C -0.26 -13.41 9.80 22.73 0.22 -13.19 16 11 C 0.01 0.30 9.49 22.22 0.21 0.51 16 12 C -0.79 -36.65 5.97 22.46 0.13 -36.51 16 13 S 2.73 109.40 5.69 -56.49 -0.32 109.08 16 14 O -1.01 -45.60 17.26 -128.00 -2.21 -47.81 16 15 O -1.00 -42.66 17.01 -128.00 -2.18 -44.84 16 16 N -1.08 -32.68 4.05 -167.19 -0.68 -33.36 16 17 C 0.13 3.12 4.22 45.52 0.19 3.31 16 18 H 0.10 2.58 7.74 -2.39 -0.02 2.56 16 19 C -0.14 -2.31 7.88 31.12 0.25 -2.06 16 20 C -0.11 -1.38 7.46 31.12 0.23 -1.15 16 21 C -0.12 -2.15 4.23 -11.01 -0.05 -2.20 16 22 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 23 C 0.48 11.38 7.69 71.24 0.55 11.93 16 24 O -0.53 -16.99 14.49 21.96 0.32 -16.67 16 25 O -0.51 -9.26 13.42 -51.39 -0.69 -9.94 16 26 C -0.02 -0.95 9.17 22.22 0.20 -0.75 16 27 C -0.20 -10.64 8.70 22.73 0.20 -10.44 16 28 H 0.30 13.02 8.30 -92.71 -0.77 12.25 16 29 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 30 H 0.11 5.11 7.60 -2.91 -0.02 5.08 16 31 H 0.42 11.70 7.39 -96.74 -0.71 10.99 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.42 4.83 9.10 -74.06 -0.67 4.15 16 37 H 0.12 5.14 7.59 -2.91 -0.02 5.12 16 38 H 0.11 5.97 6.17 -2.91 -0.02 5.95 16 Total: -1.00 -72.92 338.69 -1.08 -74.00 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -0.26 Total: 38.14 kcal Atomic # 6 Polarization: -69.10 SS G_CDS: 2.67 Total: -66.43 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.44 Total: -72.48 kcal Atomic # 8 Polarization: -114.50 SS G_CDS: -4.76 Total: -119.26 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Atomic # 16 Polarization: 109.40 SS G_CDS: -0.32 Total: 109.08 kcal Total: -72.92 -1.08 -74.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.070 kcal (2) G-P(sol) polarization free energy of solvation -72.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds