Wall clock time and date at job start Tue Mar 31 2020 14:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39704 * 120.12556 * 182.07197 * 3 2 1 5 5 C 1.37829 * 119.87139 * 179.97438 * 4 3 2 6 6 C 1.38655 * 120.12819 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.87357 * 179.97438 * 6 5 4 8 8 C 1.38619 * 120.25025 * 0.02562 * 6 5 4 9 9 C 1.50699 * 119.93652 * 179.97438 * 8 6 5 10 10 O 1.45202 * 109.47429 * 179.97438 * 9 8 6 11 11 C 1.34702 * 117.00003 * 179.97438 * 10 9 8 12 12 O 1.21465 * 120.00326 * 0.02562 * 11 10 9 13 13 C 1.47775 * 119.99705 * 180.02562 * 11 10 9 14 14 C 1.39962 * 120.02618 * 359.71997 * 13 11 10 15 15 C 1.38324 * 120.34922 * 179.78966 * 14 13 11 16 16 C 1.37757 * 120.41647 * 0.46865 * 15 14 13 17 17 C 1.40759 * 120.05347 * 359.78911 * 16 15 14 18 18 C 1.41437 * 120.17711 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99632 * 334.92639 * 18 17 16 20 20 C 1.39931 * 119.99963 * 154.92428 * 18 17 16 21 21 N 1.30831 * 119.99943 * 342.58746 * 20 18 17 22 22 Si 1.86798 * 119.99928 * 162.58620 * 20 18 17 23 23 H 1.48497 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47200 * 120.00190 * 22 20 18 25 25 H 1.48498 * 109.47372 * 240.00177 * 22 20 18 26 26 C 1.39052 * 120.02942 * 180.02562 * 13 11 10 27 27 C 1.37868 * 120.12688 * 0.24583 * 8 6 5 28 28 H 1.07997 * 120.05987 * 359.97072 * 4 3 2 29 29 H 1.07995 * 119.93242 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47703 * 59.99470 * 9 8 6 31 31 H 1.09002 * 109.47218 * 299.99336 * 9 8 6 32 32 H 1.07998 * 119.82852 * 0.02562 * 14 13 11 33 33 H 1.08000 * 119.79216 * 180.24328 * 15 14 13 34 34 H 1.08007 * 119.97480 * 179.76680 * 16 15 14 35 35 H 0.97004 * 119.99657 * 179.97438 * 21 20 18 36 36 H 1.07995 * 120.20489 * 359.95231 * 26 13 11 37 37 H 1.07999 * 120.06049 * 179.73210 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2687 1.2085 0.0437 5 6 4.6470 1.2030 0.0440 6 6 5.3381 0.0018 0.0005 7 9 6.6891 0.0024 0.0005 8 6 4.6482 -1.1997 -0.0440 9 6 5.4065 -2.5011 -0.0917 10 8 4.4671 -3.6076 -0.1322 11 6 4.9867 -4.8495 -0.1782 12 8 6.1915 -5.0041 -0.1839 13 6 4.0909 -6.0240 -0.2218 14 6 2.7026 -5.8467 -0.2094 15 6 1.8579 -6.9412 -0.2544 16 6 2.3726 -8.2180 -0.3022 17 6 3.7662 -8.4164 -0.3100 18 6 4.2975 -9.7263 -0.3585 19 1 3.7154 -10.5590 0.0077 20 6 5.5774 -9.9432 -0.8809 21 7 6.1443 -9.0279 -1.6242 22 14 6.4765 -11.5396 -0.5170 23 1 5.6255 -12.4026 0.3409 24 1 6.7706 -12.2436 -1.7910 25 1 7.7485 -11.2416 0.1889 26 6 4.6265 -7.3063 -0.2688 27 6 3.2695 -1.2061 -0.0504 28 1 2.7313 2.1447 0.0771 29 1 5.1896 2.1361 0.0773 30 1 6.0332 -2.5893 0.7958 31 1 6.0337 -2.5238 -0.9829 32 1 2.2886 -4.8501 -0.1683 33 1 0.7880 -6.7938 -0.2483 34 1 1.7065 -9.0676 -0.3333 35 1 7.0318 -9.1781 -1.9860 36 1 5.6971 -7.4481 -0.2744 37 1 2.7331 -2.1427 -0.0895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051538030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:10 Heat of formation + Delta-G solvation = -72.878481 kcal Electronic energy + Delta-G solvation = -25095.208241 eV Core-core repulsion = 21102.231690 eV Total energy + Delta-G solvation = -3992.976551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.08319 -41.60193 -40.40814 -39.19541 -37.73806 -37.29797 -35.62625 -33.55328 -32.14173 -32.07545 -31.37183 -28.11391 -27.20452 -25.17754 -24.69888 -23.15121 -22.84511 -21.53589 -19.88839 -19.50424 -18.67876 -18.31347 -17.71746 -17.64888 -17.37339 -16.72293 -16.70309 -16.48644 -15.49746 -15.22798 -15.15739 -15.08372 -14.84546 -14.74338 -14.73176 -14.53531 -14.36606 -13.84929 -13.61501 -13.53070 -13.06585 -13.01320 -12.96859 -12.81992 -12.58740 -12.23392 -12.17123 -12.05069 -12.00399 -11.55190 -11.33226 -11.10565 -10.11947 -9.80251 -9.62621 -9.45052 -8.69337 -6.40517 -0.48887 0.06438 0.10887 0.95485 1.38215 1.44549 1.50370 1.54018 1.57494 1.71530 1.77797 2.19094 2.66877 2.71387 2.73546 3.06109 3.30316 3.61822 3.66061 3.87251 4.02575 4.07702 4.11549 4.33005 4.42438 4.54053 4.60496 4.78555 4.83935 4.96089 5.00318 5.04834 5.10931 5.12168 5.26690 5.28098 5.43604 5.61151 5.79873 5.88032 6.00282 6.22246 6.40409 6.52159 6.76057 6.85817 6.87595 8.28448 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002823 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.199165 B = 9915.880474 C =11405.296963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.280 3.720 3 C -0.041 4.041 4 C -0.020 4.020 5 C -0.135 4.135 6 C 0.134 3.866 7 F -0.135 7.135 8 C -0.134 4.134 9 C 0.104 3.896 10 O -0.342 6.342 11 C 0.521 3.479 12 O -0.541 6.541 13 C -0.127 4.127 14 C -0.180 4.180 15 C -0.100 4.100 16 C -0.204 4.204 17 C 0.066 3.934 18 C -0.493 4.493 19 H 0.086 0.914 20 C 0.031 3.969 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.270 1.270 26 C -0.121 4.121 27 C -0.027 4.027 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.288 0.712 36 H 0.106 0.894 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 19.641 2.769 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.035 4.035 3 C -0.045 4.045 4 C -0.040 4.040 5 C -0.153 4.153 6 C 0.113 3.887 7 F -0.113 7.113 8 C -0.135 4.135 9 C 0.030 3.970 10 O -0.258 6.258 11 C 0.368 3.632 12 O -0.433 6.433 13 C -0.128 4.128 14 C -0.199 4.199 15 C -0.118 4.118 16 C -0.223 4.223 17 C 0.064 3.936 18 C -0.522 4.522 19 H 0.104 0.896 20 C -0.184 4.184 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.175 1.175 24 H -0.190 1.190 25 H -0.195 1.195 26 C -0.141 4.141 27 C -0.047 4.047 28 H 0.197 0.803 29 H 0.202 0.798 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.410 19.684 2.620 20.004 hybrid contribution 1.557 -1.074 -0.112 1.895 sum -0.853 18.610 2.507 18.797 Atomic orbital electron populations 1.81311 1.13291 1.08331 1.10284 1.25667 0.92525 0.92748 0.92558 1.15994 0.83746 0.95087 1.09651 1.21419 0.93042 0.97435 0.92069 1.21344 0.94284 0.97289 1.02368 1.17812 0.76813 0.93829 1.00198 1.91545 1.29125 1.97382 1.93274 1.19344 0.94421 0.92295 1.07432 1.21654 0.90163 0.81280 1.03879 1.86469 1.40411 1.14540 1.84414 1.21597 0.87010 0.83243 0.71309 1.90766 1.17564 1.86960 1.47995 1.19031 0.93744 0.89676 1.10345 1.20945 0.90718 0.99273 1.08952 1.20952 0.99612 0.91888 0.99330 1.21505 0.94360 0.97154 1.09313 1.17893 0.92055 0.93464 0.90170 1.19875 1.00951 0.93980 1.37437 0.89568 1.26832 0.97746 1.02098 0.91751 1.69866 1.15560 1.36478 1.23223 0.85143 0.78160 0.77106 0.79268 1.17516 1.18975 1.19454 1.21462 0.99934 0.90640 1.02033 1.20902 0.92236 0.98330 0.93243 0.80267 0.79805 0.89378 0.89627 0.84792 0.84413 0.86851 0.90130 0.87569 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.22 18.54 19.01 0.35 -10.87 16 2 C 0.28 5.29 15.33 88.33 1.35 6.65 16 3 C -0.04 -0.59 5.73 -21.33 -0.12 -0.71 16 4 C -0.02 -0.15 9.75 22.53 0.22 0.07 16 5 C -0.13 -1.08 10.01 22.27 0.22 -0.86 16 6 C 0.13 2.04 7.25 22.46 0.16 2.20 16 7 F -0.13 -2.42 16.79 44.97 0.75 -1.67 16 8 C -0.13 -2.62 5.88 -19.86 -0.12 -2.74 16 9 C 0.10 2.75 5.43 71.24 0.39 3.14 16 10 O -0.34 -11.33 7.92 -56.12 -0.44 -11.78 16 11 C 0.52 22.31 7.90 70.34 0.56 22.86 16 12 O -0.54 -26.04 16.12 19.95 0.32 -25.72 16 13 C -0.13 -5.91 5.87 -20.14 -0.12 -6.03 16 14 C -0.18 -7.24 9.62 22.71 0.22 -7.02 16 15 C -0.10 -3.96 10.01 22.18 0.22 -3.74 16 16 C -0.20 -9.28 9.78 22.77 0.22 -9.06 16 17 C 0.07 3.50 5.57 -21.32 -0.12 3.38 16 18 C -0.49 -25.97 9.05 23.47 0.21 -25.76 16 19 H 0.09 4.29 7.90 -2.91 -0.02 4.26 16 20 C 0.03 1.55 5.14 85.25 0.44 1.99 16 21 N -0.83 -44.38 10.97 21.82 0.24 -44.14 16 22 Si 0.98 38.35 29.59 68.60 2.03 40.38 16 23 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 26 C -0.12 -6.48 8.23 23.02 0.19 -6.29 16 27 C -0.03 -0.49 9.09 22.53 0.20 -0.29 16 28 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 29 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.13 4.50 7.59 -2.91 -0.02 4.48 16 33 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 36 H 0.11 6.25 5.77 -2.91 -0.02 6.23 16 37 H 0.14 2.99 6.98 -2.91 -0.02 2.97 16 Total: -1.00 -66.61 345.93 8.53 -58.08 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.14 Total: 17.91 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 4.13 Total: -22.19 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.59 Total: -55.01 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.12 Total: -37.50 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.75 Total: -1.67 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -66.61 8.53 -58.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051538030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.797 kcal (2) G-P(sol) polarization free energy of solvation -66.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds