Wall clock time and date at job start Tue Mar 31 2020 14:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39654 * 120.13732 * 176.74751 * 3 2 1 5 5 C 1.37934 * 119.89698 * 180.02562 * 4 3 2 6 6 C 1.38346 * 120.18030 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.85866 * 180.02562 * 6 5 4 8 8 O 1.45196 * 109.47073 * 0.02562 * 7 6 5 9 9 C 1.34704 * 117.00211 * 179.97438 * 8 7 6 10 10 O 1.21474 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.47765 * 120.00604 * 180.02562 * 9 8 7 12 12 C 1.39972 * 120.02840 * 359.72579 * 11 9 8 13 13 C 1.38315 * 120.35412 * 179.78968 * 12 11 9 14 14 C 1.37763 * 120.41698 * 0.46554 * 13 12 11 15 15 C 1.40749 * 120.05061 * 359.78772 * 14 13 12 16 16 C 1.41441 * 120.17541 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99723 * 334.91899 * 16 15 14 18 18 C 1.39935 * 120.00105 * 154.92028 * 16 15 14 19 19 N 1.30825 * 120.00195 * 342.60225 * 18 16 15 20 20 Si 1.86803 * 119.99968 * 162.60041 * 18 16 15 21 21 H 1.48494 * 109.46979 * 59.99839 * 20 18 16 22 22 H 1.48498 * 109.46946 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47004 * 299.99810 * 20 18 16 24 24 C 1.39045 * 120.03509 * 180.02562 * 11 9 8 25 25 C 1.38552 * 120.27980 * 0.02562 * 6 5 4 26 26 F 1.35106 * 119.94825 * 179.97438 * 25 6 5 27 27 C 1.38197 * 120.10212 * 0.23528 * 25 6 5 28 28 H 1.07997 * 120.05317 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.91144 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47177 * 120.02089 * 7 6 5 31 31 H 1.08999 * 109.47226 * 240.02133 * 7 6 5 32 32 H 1.08003 * 119.81944 * 359.97438 * 12 11 9 33 33 H 1.07996 * 119.78910 * 180.23504 * 13 12 11 34 34 H 1.07996 * 119.97123 * 179.76849 * 14 13 12 35 35 H 0.96996 * 120.00466 * 180.02562 * 19 18 16 36 36 H 1.07998 * 120.20716 * 359.95305 * 24 11 9 37 37 H 1.08000 * 120.09192 * 179.74016 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2686 1.2068 -0.0685 5 6 4.6479 1.2016 -0.0687 6 6 5.3389 0.0049 -0.0018 7 6 6.8459 0.0077 -0.0019 8 8 7.3274 1.3755 -0.0778 9 6 8.6625 1.5543 -0.0871 10 8 9.4043 0.5938 -0.0329 11 6 9.2248 2.9187 -0.1622 12 6 8.3707 4.0256 -0.2294 13 6 8.8897 5.3059 -0.2955 14 6 10.2527 5.5064 -0.3056 15 6 11.1274 4.4054 -0.2440 16 6 12.5272 4.6082 -0.2537 17 1 12.9404 5.5009 -0.6995 18 6 13.3766 3.6522 0.3144 19 7 12.8962 2.7586 1.1404 20 14 15.1966 3.6518 -0.1067 21 1 15.7976 4.9492 0.2941 22 1 15.8725 2.5470 0.6197 23 1 15.3661 3.4585 -1.5694 24 6 10.6028 3.1039 -0.1724 25 6 4.6513 -1.1960 0.0654 26 9 5.3329 -2.3608 0.1300 27 6 3.2694 -1.2047 0.0609 28 1 2.7313 2.1421 -0.1213 29 1 5.1900 2.1342 -0.1221 30 1 7.2102 -0.4553 0.9152 31 1 7.2103 -0.5540 -0.8620 32 1 7.3006 3.8792 -0.2267 33 1 8.2223 6.1536 -0.3433 34 1 10.6501 6.5090 -0.3612 35 1 13.4850 2.0962 1.5344 36 1 11.2658 2.2527 -0.1248 37 1 2.7335 -2.1412 0.1090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051538222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:13 Heat of formation + Delta-G solvation = -71.600114 kcal Electronic energy + Delta-G solvation = -24907.379047 eV Core-core repulsion = 20914.457930 eV Total energy + Delta-G solvation = -3992.921117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.04433 -41.56096 -40.40327 -39.15476 -37.83167 -37.25297 -35.58827 -33.59702 -32.12349 -31.80185 -31.32169 -28.56267 -27.20993 -25.19512 -23.87986 -23.45785 -22.80282 -21.49876 -20.35609 -19.62547 -18.35278 -17.95224 -17.61948 -17.48643 -17.01287 -16.96497 -16.71274 -16.51170 -16.17004 -15.19794 -15.12143 -15.04536 -14.90743 -14.76863 -14.68680 -14.37358 -14.27394 -13.89721 -13.57688 -13.48384 -13.05858 -12.93891 -12.80713 -12.68560 -12.53322 -12.40420 -12.20604 -12.03273 -11.96624 -11.51833 -11.29081 -11.06284 -10.10024 -9.82246 -9.57646 -9.39759 -8.66272 -6.37121 -0.53416 0.06377 0.15862 1.01028 1.39142 1.48508 1.49375 1.51967 1.54044 1.70951 1.82184 2.20516 2.57581 2.64587 2.75159 3.18073 3.34795 3.66365 3.67760 3.88992 3.98448 4.02315 4.12349 4.32494 4.47894 4.54955 4.68617 4.75310 4.84718 4.95418 5.04647 5.08756 5.16956 5.21153 5.30837 5.32617 5.48496 5.61234 5.85087 5.93190 6.04777 6.27541 6.33986 6.56178 6.80344 6.89254 6.92131 8.30961 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.002465 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.569468 B =11357.901313 C =12462.182312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.283 3.717 3 C -0.002 4.002 4 C -0.057 4.057 5 C -0.073 4.073 6 C -0.096 4.096 7 C 0.099 3.901 8 O -0.336 6.336 9 C 0.520 3.480 10 O -0.545 6.545 11 C -0.127 4.127 12 C -0.173 4.173 13 C -0.100 4.100 14 C -0.203 4.203 15 C 0.064 3.936 16 C -0.496 4.496 17 H 0.086 0.914 18 C 0.031 3.969 19 N -0.827 5.827 20 Si 0.981 3.019 21 H -0.254 1.254 22 H -0.274 1.274 23 H -0.261 1.261 24 C -0.124 4.124 25 C 0.098 3.902 26 F -0.138 7.138 27 C -0.091 4.091 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.287 0.713 36 H 0.103 0.897 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 -3.927 -1.862 15.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.032 4.032 3 C -0.005 4.005 4 C -0.078 4.078 5 C -0.090 4.090 6 C -0.097 4.097 7 C 0.026 3.974 8 O -0.252 6.252 9 C 0.368 3.632 10 O -0.436 6.436 11 C -0.129 4.129 12 C -0.192 4.192 13 C -0.118 4.118 14 C -0.223 4.223 15 C 0.062 3.938 16 C -0.525 4.525 17 H 0.104 0.896 18 C -0.184 4.184 19 N -0.453 5.453 20 Si 0.801 3.199 21 H -0.178 1.178 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.144 4.144 25 C 0.079 3.921 26 F -0.116 7.116 27 C -0.112 4.112 28 H 0.188 0.812 29 H 0.179 0.821 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.823 -4.481 -1.677 17.490 hybrid contribution 1.817 -0.835 0.108 2.003 sum -15.005 -5.316 -1.569 15.996 Atomic orbital electron populations 1.81327 1.13115 1.08255 1.09857 1.25501 0.92273 0.92785 0.92683 1.15664 0.83701 0.94467 1.06672 1.21523 0.93369 0.97866 0.95012 1.21052 0.93692 0.97929 0.96360 1.19848 0.93553 0.93927 1.02417 1.21680 0.90873 0.81021 1.03838 1.86455 1.23201 1.31237 1.84347 1.21639 0.80052 0.90192 0.71288 1.90777 1.61053 1.43790 1.48019 1.19028 0.93976 0.89440 1.10409 1.21027 0.99002 0.91097 1.08116 1.20994 0.94594 0.96955 0.99232 1.21517 0.93902 0.97555 1.09277 1.17891 0.94365 0.91127 0.90447 1.19820 0.91472 1.06311 1.34897 0.89622 1.26805 1.06178 0.93388 0.92040 1.69850 1.40047 1.14403 1.20976 0.85264 0.75843 0.79217 0.79537 1.17756 1.19826 1.18505 1.21462 0.92444 0.98062 1.02395 1.17071 0.89866 0.80250 1.04952 1.91542 1.79978 1.46292 1.93809 1.21128 0.91121 0.99562 0.99382 0.81227 0.82131 0.89615 0.89354 0.83851 0.83949 0.86961 0.90230 0.87856 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.28 18.54 19.00 0.35 -8.92 16 2 C 0.28 4.29 15.33 88.33 1.35 5.64 16 3 C 0.00 -0.02 5.73 -21.37 -0.12 -0.14 16 4 C -0.06 -0.60 9.75 22.54 0.22 -0.38 16 5 C -0.07 -1.05 9.36 22.22 0.21 -0.84 16 6 C -0.10 -1.77 5.89 -19.76 -0.12 -1.88 16 7 C 0.10 2.50 5.43 71.24 0.39 2.89 16 8 O -0.34 -10.25 7.91 -56.14 -0.44 -10.69 16 9 C 0.52 21.30 7.90 70.34 0.56 21.86 16 10 O -0.54 -25.64 16.12 19.92 0.32 -25.32 16 11 C -0.13 -5.66 5.87 -20.14 -0.12 -5.78 16 12 C -0.17 -6.39 9.62 22.71 0.22 -6.18 16 13 C -0.10 -3.66 10.01 22.18 0.22 -3.43 16 14 C -0.20 -8.84 9.78 22.77 0.22 -8.62 16 15 C 0.06 3.28 5.57 -21.32 -0.12 3.16 16 16 C -0.50 -25.70 9.05 23.47 0.21 -25.49 16 17 H 0.09 4.17 7.90 -2.91 -0.02 4.15 16 18 C 0.03 1.54 5.14 85.25 0.44 1.98 16 19 N -0.83 -44.15 10.97 21.82 0.24 -43.91 16 20 Si 0.98 38.03 29.59 68.60 2.03 40.06 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 22 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 C -0.12 -6.47 8.23 23.02 0.19 -6.28 16 25 C 0.10 1.62 7.24 22.33 0.16 1.78 16 26 F -0.14 -2.69 16.79 44.97 0.75 -1.93 16 27 C -0.09 -1.10 9.74 22.59 0.22 -0.88 16 28 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 29 H 0.16 2.31 6.97 -2.91 -0.02 2.29 16 30 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.14 4.12 7.59 -2.91 -0.02 4.09 16 33 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 34 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 36 H 0.10 6.00 5.77 -2.91 -0.02 5.98 16 37 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -64.21 345.91 8.52 -55.69 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.14 Total: 17.62 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.13 Total: -22.59 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.59 Total: -52.83 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.12 Total: -36.01 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.75 Total: -1.93 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -64.21 8.52 -55.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051538222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.910 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds