Wall clock time and date at job start Tue Mar 31 2020 14:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47007 * 269.99995 * 3 2 1 5 5 H 1.48501 * 109.47183 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47301 * 149.99857 * 3 2 1 7 7 C 1.38619 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 0.02562 * 7 2 1 9 9 O 1.34814 * 119.99920 * 180.02562 * 7 2 1 10 10 C 1.35799 * 116.99888 * 174.94461 * 9 7 2 11 11 C 1.38903 * 119.99079 * 185.26512 * 10 9 7 12 12 C 1.38007 * 120.00342 * 179.72382 * 11 10 9 13 13 C 1.38956 * 119.99360 * 0.57111 * 12 11 10 14 14 N 1.39778 * 120.00514 * 179.72155 * 13 12 11 15 15 C 1.46500 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.50703 * 109.47228 * 179.97438 * 15 14 13 17 17 C 1.31815 * 122.55542 * 259.71433 * 16 15 14 18 18 S 1.75296 * 111.40444 * 179.85893 * 17 16 15 19 19 C 1.75903 * 92.19302 * 0.33990 * 18 17 16 20 20 C 1.39856 * 130.56772 * 179.81454 * 19 18 17 21 21 C 1.37460 * 120.17970 * 179.97438 * 20 19 18 22 22 C 1.38847 * 120.18766 * 0.02562 * 21 20 19 23 23 C 1.36088 * 120.59321 * 0.02562 * 22 21 20 24 24 C 1.39739 * 109.67947 * 359.81599 * 19 18 17 25 25 C 1.38952 * 119.98705 * 359.70508 * 13 12 11 26 26 C 1.38016 * 119.99267 * 359.97438 * 25 13 12 27 27 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99459 * 359.97438 * 11 10 9 29 29 H 1.07996 * 120.00426 * 180.27818 * 12 11 10 30 30 H 0.97006 * 119.99683 * 179.97438 * 14 13 12 31 31 H 1.08999 * 109.47174 * 299.99488 * 15 14 13 32 32 H 1.08994 * 109.47227 * 59.99818 * 15 14 13 33 33 H 1.08003 * 124.29954 * 359.97438 * 17 16 15 34 34 H 1.08000 * 119.90640 * 0.02562 * 20 19 18 35 35 H 1.07999 * 119.90897 * 179.97438 * 21 20 19 36 36 H 1.08006 * 119.70469 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.77247 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.00084 * 179.97438 * 25 13 12 39 39 H 1.08002 * 119.99302 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0090 -1.2005 0.0005 8 1 1.4690 -2.1358 0.0005 9 8 3.3571 -1.2004 0.0011 10 6 3.9736 -2.4057 0.1082 11 6 5.3562 -2.4704 0.2253 12 6 5.9825 -3.6948 0.3399 13 6 5.2309 -4.8635 0.3262 14 7 5.8655 -6.1040 0.4365 15 6 7.3232 -6.1721 0.5659 16 6 7.7516 -7.6134 0.6678 17 6 8.0484 -8.1856 1.8176 18 16 8.5045 -9.8639 1.5981 19 6 8.2862 -9.7656 -0.1445 20 6 8.4583 -10.7340 -1.1388 21 6 8.2235 -10.4209 -2.4565 22 6 7.8147 -9.1413 -2.8078 23 6 7.6421 -8.1837 -1.8565 24 6 7.8749 -8.4770 -0.4954 25 6 3.8483 -4.7986 0.2033 26 6 3.2220 -3.5736 0.0954 27 1 -0.4850 0.8400 0.0004 28 1 5.9406 -1.5622 0.2307 29 1 7.0570 -3.7449 0.4355 30 1 5.3407 -6.9198 0.4273 31 1 7.7873 -5.7158 -0.3084 32 1 7.6337 -5.6369 1.4631 33 1 8.0131 -7.6845 2.7737 34 1 8.7757 -11.7308 -0.8704 35 1 8.3581 -11.1720 -3.2207 36 1 7.6328 -8.9037 -3.8456 37 1 7.3234 -7.1928 -2.1447 38 1 3.2640 -5.7069 0.1922 39 1 2.1473 -3.5232 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054462645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:52 Heat of formation + Delta-G solvation = 35.418273 kcal Electronic energy + Delta-G solvation = -22877.778630 eV Core-core repulsion = 19455.711355 eV Total energy + Delta-G solvation = -3422.067275 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90560 -40.55437 -38.88535 -37.14322 -35.00643 -34.22151 -32.02474 -31.82709 -30.68812 -29.44642 -27.63740 -26.19169 -24.24074 -23.72804 -23.37829 -22.20450 -20.66477 -19.61394 -19.10532 -19.06355 -17.87141 -16.95166 -16.59225 -16.39390 -16.10601 -15.94688 -15.56505 -15.38830 -15.26231 -15.07162 -14.65702 -14.34016 -14.30060 -14.22496 -13.96309 -13.80635 -13.37068 -13.13357 -13.03025 -12.71131 -12.47671 -12.39561 -12.17936 -12.03561 -11.89199 -11.61014 -11.19720 -10.98152 -10.62832 -10.28874 -9.78765 -9.52455 -8.70369 -8.42371 -7.98683 -6.10187 -0.27619 0.26308 0.53172 0.57531 0.89290 0.94844 1.13357 1.34369 1.39509 1.55499 2.33714 2.64732 2.85548 2.89560 3.17415 3.32559 3.57406 3.69277 4.00402 4.09874 4.14262 4.17474 4.33264 4.38688 4.50352 4.56049 4.57485 4.64328 4.69133 4.82983 4.93440 5.02452 5.15101 5.22645 5.24521 5.32589 5.45496 5.49489 5.56534 5.63129 5.84363 5.87536 5.92118 6.14924 6.57958 6.92982 6.94387 7.73855 8.70046 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.026846 B = 0.002207 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.750158 B =12683.696507 C =13041.553950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.390 4.390 8 H 0.077 0.923 9 O -0.254 6.254 10 C 0.067 3.933 11 C -0.141 4.141 12 C -0.145 4.145 13 C 0.163 3.837 14 N -0.741 5.741 15 C 0.192 3.808 16 C -0.110 4.110 17 C -0.171 4.171 18 S 0.096 5.904 19 C -0.161 4.161 20 C -0.095 4.095 21 C -0.102 4.102 22 C -0.122 4.122 23 C -0.090 4.090 24 C -0.082 4.082 25 C -0.151 4.151 26 C -0.187 4.187 27 H 0.282 0.718 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.399 0.601 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.187 0.813 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.058 -22.913 -0.745 31.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.095 0.905 9 O -0.163 6.163 10 C 0.018 3.982 11 C -0.160 4.160 12 C -0.168 4.168 13 C 0.062 3.938 14 N -0.375 5.375 15 C 0.066 3.934 16 C -0.122 4.122 17 C -0.306 4.306 18 S 0.362 5.638 19 C -0.276 4.276 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.090 4.090 25 C -0.173 4.173 26 C -0.206 4.206 27 H 0.091 0.909 28 H 0.147 0.853 29 H 0.168 0.832 30 H 0.234 0.766 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.204 0.796 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.630 -23.672 0.345 32.751 hybrid contribution -1.253 1.473 -0.894 2.131 sum 21.377 -22.199 -0.549 30.824 Atomic orbital electron populations 1.69754 1.06887 1.29276 1.51500 1.25269 0.95891 1.02142 0.96096 0.85187 0.78759 0.77444 0.79132 1.19211 1.19551 1.18642 1.20670 0.78549 0.95827 1.51640 0.90529 1.83500 1.20671 1.27331 1.84814 1.19469 0.93149 0.85027 1.00553 1.20297 0.90412 0.99143 1.06167 1.20500 0.99987 0.89460 1.06809 1.17514 0.90704 0.86502 0.99056 1.44329 1.05366 1.04002 1.83760 1.19838 0.80755 0.90690 1.02149 1.19688 1.04437 0.96625 0.91489 1.25276 1.04867 0.97985 1.02492 1.84082 1.72372 1.08815 0.98577 1.22979 1.07989 0.98108 0.98568 1.20798 1.00639 0.98486 0.91780 1.21432 0.97701 0.97239 0.95901 1.21068 0.99209 0.93370 1.00495 1.20922 0.98903 1.00478 0.90687 1.19293 1.02843 0.92400 0.94419 1.20428 0.93270 0.96638 1.06972 1.21047 0.99829 0.92689 1.07074 0.90879 0.85266 0.83178 0.76640 0.91261 0.90522 0.79577 0.83854 0.82531 0.83576 0.85588 0.85273 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.96 21.61 0.30 -56.91 16 2 C 0.00 0.17 5.49 84.82 0.47 0.63 16 3 Si 0.97 46.71 28.62 68.60 1.96 48.68 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.39 -23.60 9.94 67.91 0.68 -22.93 16 8 H 0.08 4.86 5.43 -2.91 -0.02 4.84 16 9 O -0.25 -14.15 8.58 -23.13 -0.20 -14.35 16 10 C 0.07 3.17 6.65 22.59 0.15 3.32 16 11 C -0.14 -5.39 9.98 22.37 0.22 -5.16 16 12 C -0.15 -4.43 9.31 22.39 0.21 -4.23 16 13 C 0.16 4.91 6.66 38.22 0.25 5.16 16 14 N -0.74 -16.67 5.73 -342.97 -1.96 -18.63 16 15 C 0.19 3.47 5.05 85.63 0.43 3.90 16 16 C -0.11 -1.93 5.34 -18.80 -0.10 -2.03 16 17 C -0.17 -2.64 10.72 67.04 0.72 -1.92 16 18 S 0.10 1.46 23.23 -56.49 -1.31 0.15 16 19 C -0.16 -2.86 6.48 23.02 0.15 -2.71 16 20 C -0.09 -1.35 10.07 22.48 0.23 -1.13 16 21 C -0.10 -1.26 10.03 22.23 0.22 -1.03 16 22 C -0.12 -1.73 9.95 21.92 0.22 -1.51 16 23 C -0.09 -1.60 9.82 22.49 0.22 -1.38 16 24 C -0.08 -1.55 6.01 -20.35 -0.12 -1.67 16 25 C -0.15 -5.33 9.89 22.39 0.22 -5.11 16 26 C -0.19 -8.38 9.16 22.37 0.20 -8.18 16 27 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 28 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.15 3.47 6.73 -2.91 -0.02 3.45 16 30 H 0.40 8.56 8.48 -92.70 -0.79 7.77 16 31 H 0.07 1.23 7.95 -2.39 -0.02 1.21 16 32 H 0.08 1.25 7.87 -2.39 -0.02 1.23 16 33 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.11 5.27 5.63 -2.91 -0.02 5.25 16 Total: -1.00 -69.96 348.79 3.47 -66.49 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.31 Total: 20.55 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 4.37 Total: -45.97 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.66 Total: -75.55 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.20 Total: -14.35 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.96 Total: 48.68 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.31 Total: 0.15 kcal Total: -69.96 3.47 -66.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054462645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.910 kcal (2) G-P(sol) polarization free energy of solvation -69.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds