Wall clock time and date at job start Tue Mar 31 2020 14:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48493 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47171 * 300.00555 * 3 2 1 6 6 H 1.48508 * 109.47025 * 60.00359 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99610 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 9 14 14 C 1.47155 * 120.98123 * 0.02562 * 13 11 10 15 15 C 1.53294 * 108.38442 * 230.50825 * 14 13 11 16 16 O 1.42964 * 109.22526 * 307.69702 * 15 14 13 17 17 C 1.42959 * 114.16408 * 62.58144 * 16 15 14 18 18 H 1.09001 * 109.51549 * 57.39442 * 17 16 15 19 19 C 1.50704 * 109.51202 * 177.49811 * 17 16 15 20 20 C 1.38269 * 119.98260 * 220.00000 * 19 17 16 21 21 C 1.38223 * 120.04425 * 180.02562 * 20 19 17 22 22 C 1.38221 * 120.03125 * 359.95623 * 21 20 19 23 23 C 1.38435 * 119.97105 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.02490 * 179.97438 * 23 22 21 25 25 C 1.38172 * 119.98697 * 39.72091 * 19 17 16 26 26 C 1.47149 * 120.98442 * 179.71670 * 13 11 10 27 27 H 0.97006 * 120.00587 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47116 * 299.99719 * 10 9 7 29 29 H 1.09004 * 109.47713 * 59.99835 * 10 9 7 30 30 H 1.09000 * 109.67966 * 350.23446 * 14 13 11 31 31 H 1.09004 * 109.67914 * 110.74640 * 14 13 11 32 32 H 1.09000 * 109.50760 * 67.62446 * 15 14 13 33 33 H 1.09001 * 109.51007 * 187.71857 * 15 14 13 34 34 H 1.07997 * 119.97836 * 359.97438 * 20 19 17 35 35 H 1.08000 * 119.98432 * 179.97438 * 21 20 19 36 36 H 1.07991 * 120.01399 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.01520 * 359.97438 * 25 19 17 38 38 H 1.09000 * 109.68501 * 249.21053 * 26 13 11 39 39 H 1.09001 * 109.68521 * 9.77044 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5022 -0.0038 13 7 2.8442 -6.3430 -0.0049 14 6 4.2996 -6.1257 -0.0052 15 6 4.9140 -6.9683 -1.1289 16 8 4.4742 -8.3221 -0.9965 17 6 3.0612 -8.4941 -1.1292 18 1 2.7365 -8.1071 -2.0951 19 6 2.7213 -9.9592 -1.0338 20 6 1.7567 -10.5002 -1.8637 21 6 1.4436 -11.8437 -1.7769 22 6 2.0951 -12.6481 -0.8610 23 6 3.0613 -12.1075 -0.0299 24 9 3.6984 -12.8927 0.8661 25 6 3.3778 -10.7624 -0.1211 26 6 2.3519 -7.7297 0.0007 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7304 -0.8928 29 1 3.1246 -3.7320 0.8872 30 1 4.5133 -5.0710 -0.1783 31 1 4.7167 -6.4321 0.9541 32 1 4.5959 -6.5749 -2.0944 33 1 6.0011 -6.9294 -1.0603 34 1 1.2470 -9.8725 -2.5796 35 1 0.6897 -12.2651 -2.4253 36 1 1.8505 -13.6978 -0.7937 37 1 4.1347 -10.3406 0.5235 38 1 2.5767 -8.1952 0.9603 39 1 1.2752 -7.7378 -0.1686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066693569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:52 Heat of formation + Delta-G solvation = -92.470102 kcal Electronic energy + Delta-G solvation = -24321.216752 eV Core-core repulsion = 20462.834596 eV Total energy + Delta-G solvation = -3858.382156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15219 -40.56651 -39.23984 -38.03230 -34.74042 -33.28451 -32.47409 -30.92340 -30.28591 -29.48240 -27.18337 -25.54398 -24.56446 -23.38743 -22.61403 -21.35859 -19.36416 -17.99924 -17.62082 -17.11069 -16.83363 -16.49586 -16.25982 -15.82612 -15.61230 -15.56593 -15.12851 -14.93117 -14.84514 -14.18187 -14.04975 -13.62594 -13.49168 -13.44528 -13.02280 -12.68708 -12.50639 -12.26543 -12.10069 -11.97404 -11.69838 -11.34763 -11.10581 -11.06413 -10.97847 -10.79363 -10.38408 -9.85022 -9.53697 -9.33619 -9.11802 -9.05462 -8.54199 -8.28502 -6.55897 -6.26164 -3.97430 0.75027 0.87671 2.73629 2.92277 3.13453 3.18512 3.22068 3.27716 3.41562 3.49899 3.89981 4.15401 4.33010 4.43872 4.53129 4.61618 4.70397 4.83251 4.86063 4.89872 4.99552 5.06594 5.09303 5.12522 5.35293 5.38858 5.46357 5.54571 5.61899 5.69440 5.72237 5.78017 5.80344 5.93534 6.02694 6.10289 6.38563 6.53920 6.80584 7.38449 7.55392 8.30719 8.41801 9.19289 10.81285 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030512 B = 0.002369 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.460444 B =11817.566589 C =12271.726360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.625 5.625 14 C 0.072 3.928 15 C 0.049 3.951 16 O -0.373 6.373 17 C 0.119 3.881 18 H 0.079 0.921 19 C -0.052 4.052 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.151 4.151 23 C 0.094 3.906 24 F -0.140 7.140 25 C -0.124 4.124 26 C 0.092 3.908 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.347 -22.640 -3.314 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.325 3.675 12 O -0.386 6.386 13 N -0.362 5.362 14 C -0.051 4.051 15 C -0.028 4.028 16 O -0.292 6.292 17 C 0.061 3.939 18 H 0.097 0.903 19 C -0.053 4.053 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.170 4.170 23 C 0.075 3.925 24 F -0.119 7.119 25 C -0.143 4.143 26 C -0.032 4.032 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.093 0.907 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.537 -22.981 -3.237 24.401 hybrid contribution 2.033 1.365 0.184 2.455 sum 9.570 -21.616 -3.053 23.836 Atomic orbital electron populations 1.70022 1.05965 1.27419 1.46812 1.24999 0.95037 0.99073 0.94489 0.86110 0.79564 0.81832 0.77942 1.19605 1.20536 1.20537 1.22885 0.94902 0.91529 1.59007 0.90858 1.85435 1.04817 0.96401 1.96705 1.23555 1.06653 0.95122 1.04785 1.20395 0.86153 0.86122 0.74825 1.90701 1.15075 1.85121 1.47713 1.48176 1.06388 1.05535 1.76103 1.22446 0.80479 1.02201 1.00022 1.23027 1.00069 0.81898 0.97855 1.87953 1.21134 1.26635 1.93475 1.21339 0.82430 0.91217 0.98924 0.90331 1.19314 0.96384 0.93782 0.95791 1.21103 0.97630 0.95503 0.99054 1.20977 0.99052 0.93198 0.97648 1.21201 0.97370 1.01309 0.97147 1.17700 0.94949 0.88976 0.90876 1.91507 1.80557 1.74068 1.65745 1.20990 1.01271 0.91706 1.00357 1.22261 1.01144 0.81399 0.98358 0.92183 0.89187 0.89127 0.88075 0.90489 0.92183 0.87262 0.84877 0.84631 0.84709 0.84161 0.90747 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.96 4.53 36.01 0.16 -2.79 16 11 C 0.54 9.92 7.73 -10.99 -0.08 9.84 16 12 O -0.51 -11.41 15.33 5.56 0.09 -11.32 16 13 N -0.62 -8.67 3.01 -171.99 -0.52 -9.19 16 14 C 0.07 0.75 6.54 -3.53 -0.02 0.72 16 15 C 0.05 0.43 6.98 37.31 0.26 0.69 16 16 O -0.37 -3.92 9.70 -35.23 -0.34 -4.26 16 17 C 0.12 1.25 3.00 -27.49 -0.08 1.17 16 18 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 19 C -0.05 -0.50 4.98 -104.63 -0.52 -1.03 16 20 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 21 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 22 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 23 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 24 F -0.14 -1.48 17.27 2.25 0.04 -1.45 16 25 C -0.12 -1.24 9.33 -39.51 -0.37 -1.60 16 26 C 0.09 1.13 5.93 -3.29 -0.02 1.11 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.09 1.60 7.66 -51.91 -0.40 1.21 16 29 H 0.09 1.65 8.02 -51.91 -0.42 1.23 16 30 H 0.10 1.01 6.05 -51.93 -0.31 0.69 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.13 0.92 8.04 -52.49 -0.42 0.50 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 1.37 7.77 -52.49 -0.41 0.96 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.43 7.08 -51.93 -0.37 1.06 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -34.08 348.44 -8.75 -42.83 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.82 Total: -1.05 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.94 Total: -7.95 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.22 Total: -34.28 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.26 Total: -15.59 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.08 -8.75 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066693569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.637 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds