Wall clock time and date at job start Tue Mar 31 2020 14:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48493 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47171 * 300.00555 * 3 2 1 6 6 H 1.48508 * 109.47025 * 60.00359 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99610 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00466 * 179.97438 * 11 10 9 14 14 C 1.47155 * 120.98123 * 0.02562 * 13 11 10 15 15 C 1.53294 * 108.38442 * 230.50825 * 14 13 11 16 16 O 1.42964 * 109.22526 * 307.69702 * 15 14 13 17 17 C 1.42959 * 114.16408 * 62.58144 * 16 15 14 18 18 H 1.09001 * 109.51549 * 57.39442 * 17 16 15 19 19 C 1.50704 * 109.51202 * 177.49811 * 17 16 15 20 20 C 1.38269 * 119.98260 * 220.00000 * 19 17 16 21 21 C 1.38223 * 120.04425 * 180.02562 * 20 19 17 22 22 C 1.38221 * 120.03125 * 359.95623 * 21 20 19 23 23 C 1.38435 * 119.97105 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.02490 * 179.97438 * 23 22 21 25 25 C 1.38172 * 119.98697 * 39.72091 * 19 17 16 26 26 C 1.47149 * 120.98442 * 179.71670 * 13 11 10 27 27 H 0.97006 * 120.00587 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47116 * 299.99719 * 10 9 7 29 29 H 1.09004 * 109.47713 * 59.99835 * 10 9 7 30 30 H 1.09000 * 109.67966 * 350.23446 * 14 13 11 31 31 H 1.09004 * 109.67914 * 110.74640 * 14 13 11 32 32 H 1.09000 * 109.50760 * 67.62446 * 15 14 13 33 33 H 1.09001 * 109.51007 * 187.71857 * 15 14 13 34 34 H 1.07997 * 119.97836 * 359.97438 * 20 19 17 35 35 H 1.08000 * 119.98432 * 179.97438 * 21 20 19 36 36 H 1.07991 * 120.01399 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.01520 * 359.97438 * 25 19 17 38 38 H 1.09000 * 109.68501 * 249.21053 * 26 13 11 39 39 H 1.09001 * 109.68521 * 9.77044 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5022 -0.0038 13 7 2.8442 -6.3430 -0.0049 14 6 4.2996 -6.1257 -0.0052 15 6 4.9140 -6.9683 -1.1289 16 8 4.4742 -8.3221 -0.9965 17 6 3.0612 -8.4941 -1.1292 18 1 2.7365 -8.1071 -2.0951 19 6 2.7213 -9.9592 -1.0338 20 6 1.7567 -10.5002 -1.8637 21 6 1.4436 -11.8437 -1.7769 22 6 2.0951 -12.6481 -0.8610 23 6 3.0613 -12.1075 -0.0299 24 9 3.6984 -12.8927 0.8661 25 6 3.3778 -10.7624 -0.1211 26 6 2.3519 -7.7297 0.0007 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7304 -0.8928 29 1 3.1246 -3.7320 0.8872 30 1 4.5133 -5.0710 -0.1783 31 1 4.7167 -6.4321 0.9541 32 1 4.5959 -6.5749 -2.0944 33 1 6.0011 -6.9294 -1.0603 34 1 1.2470 -9.8725 -2.5796 35 1 0.6897 -12.2651 -2.4253 36 1 1.8505 -13.6978 -0.7937 37 1 4.1347 -10.3406 0.5235 38 1 2.5767 -8.1952 0.9603 39 1 1.2752 -7.7378 -0.1686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066693569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:51 Heat of formation + Delta-G solvation = -113.575906 kcal Electronic energy + Delta-G solvation = -24322.131968 eV Core-core repulsion = 20462.834596 eV Total energy + Delta-G solvation = -3859.297373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.90790 -41.57387 -40.20145 -39.03296 -35.90678 -34.59010 -34.06280 -31.64762 -31.37421 -30.57495 -28.26966 -27.61270 -25.46701 -24.17325 -23.39502 -22.19189 -20.65789 -19.64246 -18.62790 -18.18119 -17.85020 -17.32161 -17.12397 -16.88803 -16.81467 -16.59497 -16.52262 -16.01338 -15.96243 -15.73416 -14.88582 -14.78274 -14.71748 -14.50085 -14.19836 -13.79031 -13.55383 -13.32556 -13.18609 -13.07958 -12.92212 -12.81042 -12.60415 -12.48491 -12.02881 -11.84002 -11.70902 -11.31344 -11.16360 -10.95150 -10.27574 -10.09012 -9.79616 -9.56283 -8.68602 -8.35313 -6.13797 0.06889 0.21234 1.21882 1.41627 1.44001 1.48150 1.56301 1.94525 2.26205 2.44312 2.68925 2.99289 3.19814 3.20404 3.55378 3.64047 3.69422 3.81767 3.90770 4.04216 4.10798 4.15509 4.21528 4.26789 4.31729 4.37109 4.44103 4.50443 4.65654 4.75537 4.81257 4.87295 5.05997 5.12701 5.29378 5.31023 5.41944 5.43485 5.88289 6.02727 6.13172 6.19852 7.02035 7.06335 8.74125 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030512 B = 0.002369 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.460444 B =11817.566589 C =12271.726360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.152 6.152 10 C -0.124 4.124 11 C 0.536 3.464 12 O -0.561 6.561 13 N -0.613 5.613 14 C 0.064 3.936 15 C 0.050 3.950 16 O -0.379 6.379 17 C 0.130 3.870 18 H 0.079 0.921 19 C -0.065 4.065 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.149 4.149 23 C 0.075 3.925 24 F -0.149 7.149 25 C -0.133 4.133 26 C 0.091 3.909 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 -23.255 -3.999 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.075 5.925 10 C -0.275 4.275 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.348 5.348 14 C -0.058 4.058 15 C -0.027 4.027 16 O -0.298 6.298 17 C 0.072 3.928 18 H 0.097 0.903 19 C -0.066 4.066 20 C -0.137 4.137 21 C -0.104 4.104 22 C -0.167 4.167 23 C 0.056 3.944 24 F -0.128 7.128 25 C -0.152 4.152 26 C -0.032 4.032 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.100 0.900 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.818 -23.636 -3.923 25.893 hybrid contribution 1.392 1.396 0.395 2.011 sum 11.211 -22.241 -3.528 25.155 Atomic orbital electron populations 1.70187 1.08002 1.28562 1.48080 1.26133 0.95960 1.03352 0.93767 0.84902 0.78696 0.76315 0.78014 1.17851 1.19970 1.20088 1.23216 0.95362 0.91762 1.58723 0.89725 1.85632 1.10488 0.99338 1.97035 1.23367 1.03571 0.93865 1.06659 1.20197 0.85903 0.86587 0.74909 1.90685 1.17116 1.85693 1.50411 1.48152 1.07588 1.05138 1.73943 1.22792 0.77978 1.03258 1.01753 1.23195 1.01678 0.80779 0.97062 1.87968 1.20836 1.27588 1.93372 1.21192 0.82342 0.91501 0.97810 0.90310 1.19318 0.97323 0.93304 0.96651 1.21373 0.97070 0.96353 0.98871 1.21331 0.99037 0.92600 0.97405 1.21508 0.96368 1.02495 0.96348 1.17924 0.95912 0.89025 0.91572 1.91480 1.80895 1.74233 1.66199 1.20995 1.01538 0.92038 1.00624 1.22366 1.00504 0.80563 0.99745 0.92003 0.86951 0.87268 0.87313 0.88838 0.92117 0.84163 0.83623 0.81669 0.82661 0.84567 0.90040 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.44 13.22 21.65 0.29 -55.16 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.33 9.50 67.95 0.65 -29.69 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.12 -4.77 4.53 71.24 0.32 -4.45 16 11 C 0.54 19.80 7.73 87.66 0.68 20.47 16 12 O -0.56 -25.82 15.33 -3.04 -0.05 -25.87 16 13 N -0.61 -16.38 3.01 -816.46 -2.46 -18.84 16 14 C 0.06 1.17 6.54 86.35 0.56 1.73 16 15 C 0.05 0.74 6.98 72.08 0.50 1.24 16 16 O -0.38 -7.20 9.70 -148.98 -1.44 -8.65 16 17 C 0.13 2.58 3.00 30.10 0.09 2.67 16 18 H 0.08 1.55 8.00 -2.39 -0.02 1.54 16 19 C -0.07 -1.20 4.98 -19.87 -0.10 -1.30 16 20 C -0.12 -1.79 9.67 22.27 0.22 -1.57 16 21 C -0.09 -1.05 10.04 22.26 0.22 -0.82 16 22 C -0.15 -2.10 10.03 22.31 0.22 -1.87 16 23 C 0.07 1.39 7.30 22.38 0.16 1.56 16 24 F -0.15 -3.10 17.27 44.97 0.78 -2.32 16 25 C -0.13 -2.56 9.33 22.31 0.21 -2.35 16 26 C 0.09 2.20 5.93 86.51 0.51 2.71 16 27 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 28 H 0.11 3.82 7.66 -2.39 -0.02 3.80 16 29 H 0.11 3.80 8.02 -2.39 -0.02 3.78 16 30 H 0.11 1.83 6.05 -2.39 -0.01 1.82 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.15 1.77 8.04 -2.91 -0.02 1.75 16 35 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.16 1.49 8.06 -2.92 -0.02 1.46 16 37 H 0.14 2.61 7.77 -2.91 -0.02 2.59 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 2.45 7.08 -2.39 -0.02 2.43 16 Total: -1.00 -76.28 348.44 3.76 -72.52 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.07 Total: 13.44 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.72 Total: -10.50 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -2.17 Total: -73.99 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.49 Total: -34.52 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -76.28 3.76 -72.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066693569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.058 kcal (2) G-P(sol) polarization free energy of solvation -76.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds