Wall clock time and date at job start Tue Mar 31 2020 14:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48507 * 109.46838 * 240.00038 * 3 2 1 5 5 H 1.48504 * 109.46857 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47362 * 119.99818 * 3 2 1 7 7 C 1.39908 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99840 * 175.56783 * 7 2 1 9 9 C 1.41152 * 119.99984 * 355.56930 * 7 2 1 10 10 C 1.40871 * 120.15986 * 214.77927 * 9 7 2 11 11 C 1.36376 * 119.82224 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.17261 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83054 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00344 * 35.27772 * 13 12 11 15 15 O 1.21275 * 119.99995 * 355.97515 * 14 13 12 16 16 C 1.50701 * 119.99837 * 175.69635 * 14 13 12 17 17 H 1.09003 * 109.27000 * 60.47703 * 16 14 13 18 18 C 1.54139 * 109.28382 * 301.02749 * 16 14 13 19 19 S 1.83296 * 101.08076 * 268.03115 * 18 16 14 20 20 C 1.77435 * 96.60940 * 335.15717 * 19 18 16 21 21 C 1.38823 * 130.56043 * 195.49334 * 20 19 18 22 22 C 1.38030 * 120.15524 * 179.36193 * 21 20 19 23 23 C 1.38319 * 119.29176 * 0.02562 * 22 21 20 24 24 C 1.37703 * 120.54434 * 0.12674 * 23 22 21 25 25 C 1.38886 * 108.28447 * 15.19231 * 20 19 18 26 26 C 1.39480 * 120.32825 * 0.25515 * 12 11 10 27 27 C 1.36372 * 120.16963 * 359.48095 * 26 12 11 28 28 H 0.97000 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.08935 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.91374 * 180.02562 * 11 10 9 31 31 H 0.97008 * 119.99491 * 215.27143 * 13 12 11 32 32 H 1.09000 * 111.09765 * 25.98770 * 18 16 14 33 33 H 1.09003 * 111.10119 * 150.07599 * 18 16 14 34 34 H 1.07995 * 119.92287 * 359.39187 * 21 20 19 35 35 H 1.07996 * 120.35195 * 180.02562 * 22 21 20 36 36 H 1.08001 * 119.72841 * 180.17301 * 23 22 21 37 37 H 1.08007 * 119.46859 * 180.02562 * 24 23 22 38 38 H 1.08002 * 119.90813 * 179.74771 * 26 12 11 39 39 H 1.08007 * 120.08356 * 180.26099 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2126 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0717 9 6 1.3056 -2.4322 0.0955 10 6 1.8649 -3.5180 0.7974 11 6 1.1804 -4.6943 0.8844 12 6 -0.0701 -4.8240 0.2803 13 7 -0.7626 -6.0284 0.3731 14 6 -0.6807 -6.7679 1.4968 15 8 0.0528 -6.4218 2.3984 16 6 -1.5055 -8.0216 1.6355 17 1 -1.2332 -8.7206 0.8447 18 6 -2.9994 -7.6651 1.5052 19 16 -3.4491 -7.3852 3.2599 20 6 -2.1732 -8.3988 3.9620 21 6 -2.0320 -8.9138 5.2434 22 6 -0.9425 -9.7004 5.5585 23 6 0.0034 -9.9676 4.5852 24 6 -0.1352 -9.4541 3.3150 25 6 -1.2282 -8.6544 2.9768 26 6 -0.6277 -3.7552 -0.4213 27 6 0.0425 -2.5710 -0.5124 28 1 -0.4851 0.8400 -0.0004 29 1 2.8336 -3.4194 1.2647 30 1 1.6076 -5.5276 1.4225 31 1 -1.3040 -6.3351 -0.3711 32 1 -3.1365 -6.7587 0.9155 33 1 -3.5655 -8.4953 1.0826 34 1 -2.7767 -8.6988 5.9954 35 1 -0.8297 -10.1030 6.5542 36 1 0.8573 -10.5845 4.8233 37 1 0.6136 -9.6741 2.5684 38 1 -1.5946 -3.8644 -0.8900 39 1 -0.3924 -1.7429 -1.0524 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079908271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:20 Heat of formation + Delta-G solvation = 20.462875 kcal Electronic energy + Delta-G solvation = -23759.609369 eV Core-core repulsion = 20336.893579 eV Total energy + Delta-G solvation = -3422.715790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37687 -38.93935 -37.28302 -34.62145 -34.49000 -32.88610 -30.96882 -29.89202 -29.53217 -28.71799 -25.66638 -24.52191 -22.93879 -22.28797 -21.32814 -20.62789 -19.55109 -17.91089 -17.43458 -17.08515 -16.41127 -15.77235 -15.53575 -15.23436 -15.00761 -14.65751 -14.26341 -13.87452 -13.61362 -13.27002 -13.09281 -12.93731 -12.66494 -12.60922 -12.47535 -12.13322 -11.77417 -11.63942 -11.38308 -11.18903 -11.13662 -11.01297 -10.73703 -10.28962 -10.05336 -9.78721 -9.51626 -9.46919 -9.20127 -8.93684 -8.85993 -7.56659 -7.48758 -6.88762 -6.62689 -4.35539 1.03446 1.22593 1.42302 2.10521 2.50279 2.97447 3.07535 3.09164 3.11554 3.23731 3.42079 3.78751 3.97556 4.16914 4.32883 4.66505 4.70016 4.82587 4.88551 5.04182 5.15843 5.19310 5.29669 5.39889 5.62452 5.64759 5.82658 6.13030 6.16441 6.21748 6.36239 6.41882 6.71331 6.75235 6.88596 7.05096 7.18027 7.27934 7.61845 7.70700 7.84111 8.04378 8.21217 8.29943 8.59556 8.68984 8.91605 8.98108 10.28402 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.002828 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.149518 B = 9897.731935 C =10201.314719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.084 4.084 12 C 0.003 3.997 13 N -0.650 5.650 14 C 0.507 3.493 15 O -0.509 6.509 16 C -0.077 4.077 17 H 0.118 0.882 18 C -0.082 4.082 19 S -0.135 6.135 20 C -0.068 4.068 21 C -0.092 4.092 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.075 4.075 25 C -0.079 4.079 26 C -0.119 4.119 27 C -0.141 4.141 28 H 0.278 0.722 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.394 0.606 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 -17.586 2.863 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.104 4.104 12 C -0.089 4.089 13 N -0.293 5.293 14 C 0.292 3.708 15 O -0.383 6.383 16 C -0.099 4.099 17 H 0.136 0.864 18 C -0.231 4.231 19 S 0.107 5.893 20 C -0.180 4.180 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.095 4.095 25 C -0.085 4.085 26 C -0.139 4.139 27 C -0.161 4.161 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.228 0.772 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.897 -16.386 3.956 18.213 hybrid contribution 0.995 -0.014 -0.770 1.258 sum -5.902 -16.399 3.186 17.718 Atomic orbital electron populations 1.69743 1.07288 1.28856 1.37935 1.25877 0.94947 1.01166 0.92532 0.86247 0.79806 0.80101 0.79777 1.19052 1.20414 1.19074 1.19476 0.94719 0.90249 1.44785 0.90639 1.17714 0.92268 0.91969 0.88158 1.20803 1.01247 0.94965 1.05548 1.20376 0.92790 0.97857 0.99408 1.17229 0.94196 0.85711 1.11765 1.42933 1.49032 1.21433 1.15889 1.19986 0.83537 0.84631 0.82645 1.90722 1.38451 1.69687 1.39458 1.20737 0.94559 0.97231 0.97367 0.86442 1.24369 0.95594 1.06718 0.96400 1.86180 1.39495 1.60479 1.03152 1.22006 0.98287 1.00461 0.97259 1.20369 0.99073 0.98102 0.93994 1.21075 0.93741 0.97899 0.99329 1.20926 0.99464 1.00911 0.92924 1.20752 0.95791 0.95941 0.97042 1.20144 0.96073 0.99032 0.93230 1.20296 0.98299 0.93130 1.02219 1.21188 0.97311 0.95527 1.02120 0.91053 0.88619 0.87607 0.77207 0.86094 0.87196 0.85584 0.85178 0.85559 0.86051 0.89107 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.16 10.60 55.55 0.59 -20.57 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.92 19.08 29.56 -169.99 -5.03 14.05 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.35 9.02 -37.85 -0.34 -12.69 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 10 C -0.21 -5.23 9.74 -39.26 -0.38 -5.62 16 11 C -0.08 -2.02 8.61 -39.79 -0.34 -2.36 16 12 C 0.00 0.07 6.30 -83.57 -0.53 -0.46 16 13 N -0.65 -10.92 4.88 -9.74 -0.05 -10.97 16 14 C 0.51 8.65 6.90 -10.99 -0.08 8.58 16 15 O -0.51 -11.06 13.45 5.56 0.07 -10.98 16 16 C -0.08 -0.95 2.93 -92.24 -0.27 -1.22 16 17 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.08 -0.87 7.00 37.75 0.26 -0.61 16 19 S -0.14 -1.85 23.05 -107.50 -2.48 -4.33 16 20 C -0.07 -0.95 6.48 -39.12 -0.25 -1.20 16 21 C -0.09 -1.11 10.05 -39.44 -0.40 -1.51 16 22 C -0.10 -1.05 10.08 -39.63 -0.40 -1.45 16 23 C -0.12 -1.31 10.00 -39.75 -0.40 -1.71 16 24 C -0.08 -0.93 9.97 -39.27 -0.39 -1.32 16 25 C -0.08 -1.08 4.46 -103.79 -0.46 -1.54 16 26 C -0.12 -2.68 9.90 -39.79 -0.39 -3.07 16 27 C -0.14 -3.62 8.62 -39.26 -0.34 -3.96 16 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.11 2.51 6.23 -52.48 -0.33 2.18 16 31 H 0.39 4.97 8.49 -40.82 -0.35 4.62 16 32 H 0.12 1.24 7.27 -51.93 -0.38 0.86 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 3.48 6.14 -52.48 -0.32 3.16 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -32.09 342.81 -11.42 -43.51 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.30 Total: 10.46 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -5.39 Total: -26.33 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.54 Total: -31.54 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.48 Total: -4.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.09 -11.42 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.969 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds