Wall clock time and date at job start Tue Mar 31 2020 14:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48507 * 109.46838 * 240.00038 * 3 2 1 5 5 H 1.48504 * 109.46857 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47362 * 119.99818 * 3 2 1 7 7 C 1.39908 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99840 * 175.56783 * 7 2 1 9 9 C 1.41152 * 119.99984 * 355.56930 * 7 2 1 10 10 C 1.40871 * 120.15986 * 214.77927 * 9 7 2 11 11 C 1.36376 * 119.82224 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.17261 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83054 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00344 * 35.27772 * 13 12 11 15 15 O 1.21275 * 119.99995 * 355.97515 * 14 13 12 16 16 C 1.50701 * 119.99837 * 175.69635 * 14 13 12 17 17 H 1.09003 * 109.27000 * 60.47703 * 16 14 13 18 18 C 1.54139 * 109.28382 * 301.02749 * 16 14 13 19 19 S 1.83296 * 101.08076 * 268.03115 * 18 16 14 20 20 C 1.77435 * 96.60940 * 335.15717 * 19 18 16 21 21 C 1.38823 * 130.56043 * 195.49334 * 20 19 18 22 22 C 1.38030 * 120.15524 * 179.36193 * 21 20 19 23 23 C 1.38319 * 119.29176 * 0.02562 * 22 21 20 24 24 C 1.37703 * 120.54434 * 0.12674 * 23 22 21 25 25 C 1.38886 * 108.28447 * 15.19231 * 20 19 18 26 26 C 1.39480 * 120.32825 * 0.25515 * 12 11 10 27 27 C 1.36372 * 120.16963 * 359.48095 * 26 12 11 28 28 H 0.97000 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.08935 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.91374 * 180.02562 * 11 10 9 31 31 H 0.97008 * 119.99491 * 215.27143 * 13 12 11 32 32 H 1.09000 * 111.09765 * 25.98770 * 18 16 14 33 33 H 1.09003 * 111.10119 * 150.07599 * 18 16 14 34 34 H 1.07995 * 119.92287 * 359.39187 * 21 20 19 35 35 H 1.07996 * 120.35195 * 180.02562 * 22 21 20 36 36 H 1.08001 * 119.72841 * 180.17301 * 23 22 21 37 37 H 1.08007 * 119.46859 * 180.02562 * 24 23 22 38 38 H 1.08002 * 119.90813 * 179.74771 * 26 12 11 39 39 H 1.08007 * 120.08356 * 180.26099 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2126 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0717 9 6 1.3056 -2.4322 0.0955 10 6 1.8649 -3.5180 0.7974 11 6 1.1804 -4.6943 0.8844 12 6 -0.0701 -4.8240 0.2803 13 7 -0.7626 -6.0284 0.3731 14 6 -0.6807 -6.7679 1.4968 15 8 0.0528 -6.4218 2.3984 16 6 -1.5055 -8.0216 1.6355 17 1 -1.2332 -8.7206 0.8447 18 6 -2.9994 -7.6651 1.5052 19 16 -3.4491 -7.3852 3.2599 20 6 -2.1732 -8.3988 3.9620 21 6 -2.0320 -8.9138 5.2434 22 6 -0.9425 -9.7004 5.5585 23 6 0.0034 -9.9676 4.5852 24 6 -0.1352 -9.4541 3.3150 25 6 -1.2282 -8.6544 2.9768 26 6 -0.6277 -3.7552 -0.4213 27 6 0.0425 -2.5710 -0.5124 28 1 -0.4851 0.8400 -0.0004 29 1 2.8336 -3.4194 1.2647 30 1 1.6076 -5.5276 1.4225 31 1 -1.3040 -6.3351 -0.3711 32 1 -3.1365 -6.7587 0.9155 33 1 -3.5655 -8.4953 1.0826 34 1 -2.7767 -8.6988 5.9954 35 1 -0.8297 -10.1030 6.5542 36 1 0.8573 -10.5845 4.8233 37 1 0.6136 -9.6741 2.5684 38 1 -1.5946 -3.8644 -0.8900 39 1 -0.3924 -1.7429 -1.0524 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079908271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:19 Heat of formation + Delta-G solvation = 3.260530 kcal Electronic energy + Delta-G solvation = -23760.355319 eV Core-core repulsion = 20336.893579 eV Total energy + Delta-G solvation = -3423.461740 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66670 -40.10951 -38.96860 -36.19641 -35.69000 -34.61885 -31.84128 -31.52117 -31.05322 -30.21621 -27.17640 -25.85150 -23.83082 -23.67984 -22.99223 -22.18811 -20.95073 -19.29334 -18.93106 -18.43065 -17.90714 -17.04108 -16.82398 -16.44934 -16.13842 -15.84184 -15.66844 -15.48474 -14.87100 -14.58244 -14.45500 -14.11122 -13.93803 -13.90504 -13.74904 -13.56393 -13.36964 -13.23359 -12.86211 -12.77048 -12.50740 -12.48414 -12.05607 -11.80158 -11.40774 -11.22737 -11.22619 -10.85257 -10.70708 -10.59339 -9.82285 -9.47718 -8.74540 -8.51529 -8.47885 -6.34361 0.12813 0.33336 0.50653 0.78062 1.12702 1.19077 1.38647 1.44444 1.50452 1.70222 2.19322 2.24251 2.74698 2.80311 3.24619 3.36792 3.66010 3.80368 3.86720 4.12407 4.14088 4.33297 4.38763 4.41567 4.49150 4.52292 4.54591 4.76183 4.91824 4.98031 5.11932 5.13532 5.24962 5.32524 5.37556 5.41890 5.50454 5.68324 5.88668 5.93082 6.00800 6.12320 6.38214 6.64789 6.68638 6.95748 6.98671 7.33758 8.41125 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.002828 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.149518 B = 9897.731935 C =10201.314719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.069 3.931 10 C -0.223 4.223 11 C -0.097 4.097 12 C 0.023 3.977 13 N -0.640 5.640 14 C 0.508 3.492 15 O -0.558 6.558 16 C -0.065 4.065 17 H 0.159 0.841 18 C -0.066 4.066 19 S -0.192 6.192 20 C -0.087 4.087 21 C -0.108 4.108 22 C -0.097 4.097 23 C -0.125 4.125 24 C -0.090 4.090 25 C -0.102 4.102 26 C -0.117 4.117 27 C -0.159 4.159 28 H 0.285 0.715 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.419 0.581 32 H 0.127 0.873 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 -19.337 2.501 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.531 4.531 8 H 0.090 0.910 9 C 0.066 3.934 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.070 4.070 13 N -0.286 5.286 14 C 0.295 3.705 15 O -0.436 6.436 16 C -0.087 4.087 17 H 0.176 0.824 18 C -0.214 4.214 19 S 0.049 5.951 20 C -0.199 4.199 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.110 4.110 25 C -0.108 4.108 26 C -0.137 4.137 27 C -0.180 4.180 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.257 0.743 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.179 0.821 36 H 0.172 0.828 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.615 -18.185 3.566 20.035 hybrid contribution 1.173 0.319 -0.577 1.345 sum -6.443 -17.865 2.989 19.225 Atomic orbital electron populations 1.69808 1.08554 1.30037 1.38455 1.26724 0.95814 1.04265 0.91560 0.85171 0.78531 0.75630 0.79836 1.18133 1.19204 1.19100 1.19712 0.94843 0.91417 1.47099 0.90979 1.18017 0.93401 0.92595 0.89337 1.20920 1.01608 0.95642 1.06087 1.20494 0.93863 0.97356 0.99960 1.17267 0.93336 0.87327 1.09113 1.42828 1.48723 1.19782 1.17219 1.20857 0.82769 0.85408 0.81434 1.90706 1.40628 1.71147 1.41084 1.20736 0.94561 0.94991 0.98400 0.82356 1.24547 0.94491 1.08560 0.93780 1.86288 1.40555 1.61515 1.06731 1.22203 0.98486 1.01025 0.98195 1.20714 1.00099 0.98504 0.93858 1.21490 0.92693 0.96763 1.00731 1.21344 1.00208 1.00530 0.92377 1.21075 0.95734 0.96007 0.98181 1.20391 0.96689 0.99938 0.93755 1.20565 0.99326 0.92037 1.01755 1.21182 0.97463 0.96528 1.02785 0.90457 0.88865 0.87588 0.74287 0.85495 0.83151 0.84636 0.82081 0.82797 0.84917 0.85498 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.79 10.60 21.82 0.23 -44.56 16 2 C 0.03 1.47 5.42 85.24 0.46 1.93 16 3 Si 0.99 39.56 29.56 68.60 2.03 41.59 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.50 -27.80 9.02 23.39 0.21 -27.59 16 8 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 9 C 0.07 3.83 5.55 -21.28 -0.12 3.71 16 10 C -0.22 -11.75 9.74 22.48 0.22 -11.53 16 11 C -0.10 -4.68 8.61 22.14 0.19 -4.49 16 12 C 0.02 0.98 6.30 38.57 0.24 1.22 16 13 N -0.64 -19.97 4.88 -303.12 -1.48 -21.45 16 14 C 0.51 16.37 6.90 87.66 0.61 16.98 16 15 O -0.56 -24.05 13.45 -3.01 -0.04 -24.09 16 16 C -0.06 -1.42 2.93 -11.84 -0.03 -1.45 16 17 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 18 C -0.07 -1.19 7.00 72.37 0.51 -0.68 16 19 S -0.19 -5.09 23.05 -56.49 -1.30 -6.39 16 20 C -0.09 -2.34 6.48 22.57 0.15 -2.19 16 21 C -0.11 -2.51 10.05 22.36 0.22 -2.29 16 22 C -0.10 -1.82 10.08 22.24 0.22 -1.60 16 23 C -0.12 -2.38 10.00 22.16 0.22 -2.16 16 24 C -0.09 -2.05 9.97 22.47 0.22 -1.83 16 25 C -0.10 -2.60 4.46 -19.33 -0.09 -2.69 16 26 C -0.12 -5.15 9.90 22.13 0.22 -4.93 16 27 C -0.16 -8.32 8.62 22.48 0.19 -8.13 16 28 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 29 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.11 5.10 6.23 -2.91 -0.02 5.08 16 31 H 0.42 8.98 8.49 -92.70 -0.79 8.20 16 32 H 0.13 2.15 7.27 -2.39 -0.02 2.13 16 33 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.12 6.45 6.14 -2.91 -0.02 6.43 16 Total: -1.00 -73.62 342.81 3.40 -70.22 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.31 Total: 32.37 kcal Atomic # 6 Polarization: -51.35 SS G_CDS: 3.65 Total: -47.70 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -1.25 Total: -66.01 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -1.30 Total: -6.39 kcal Total: -73.62 3.40 -70.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.482 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds