Wall clock time and date at job start Tue Mar 31 2020 14:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29760 * 126.33851 * 2 1 4 4 O 1.41317 * 109.75120 * 179.97438 * 3 2 1 5 5 C 1.34803 * 109.44623 * 359.97438 * 4 3 2 6 6 N 1.32501 * 133.14743 * 179.97438 * 5 4 3 7 7 C 1.31651 * 121.68917 * 179.72888 * 6 5 4 8 8 C 1.38636 * 121.50656 * 0.55055 * 7 6 5 9 9 S 1.76200 * 120.29668 * 179.73887 * 8 7 6 10 10 O 1.42099 * 106.40006 * 156.18097 * 9 8 7 11 11 O 1.42100 * 106.40297 * 23.26235 * 9 8 7 12 12 N 1.65603 * 107.22078 * 269.72112 * 9 8 7 13 13 C 1.46494 * 119.99900 * 270.00068 * 12 9 8 14 14 C 1.46496 * 119.99847 * 89.99898 * 12 9 8 15 15 H 1.09001 * 109.47001 * 0.02562 * 14 12 9 16 16 C 1.52997 * 109.47194 * 240.00018 * 14 12 9 17 17 C 1.50706 * 109.47106 * 120.00008 * 14 12 9 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 14 12 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 14 12 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47293 * 89.99746 * 21 19 17 23 23 H 1.48504 * 109.47104 * 209.99992 * 21 19 17 24 24 H 1.48495 * 109.47249 * 329.99739 * 21 19 17 25 25 C 1.38182 * 119.40063 * 359.46692 * 8 7 6 26 26 C 1.39808 * 118.06218 * 0.24957 * 25 8 7 27 27 H 1.08996 * 109.47449 * 269.99997 * 1 2 3 28 28 H 1.09000 * 109.47541 * 30.00547 * 1 2 3 29 29 H 1.09001 * 109.46956 * 150.00294 * 1 2 3 30 30 H 1.07998 * 119.24237 * 180.26298 * 7 6 5 31 31 H 1.08999 * 109.47438 * 270.00037 * 13 12 9 32 32 H 1.09000 * 109.47621 * 30.00266 * 13 12 9 33 33 H 1.09004 * 109.47284 * 149.99702 * 13 12 9 34 34 H 1.08992 * 109.47280 * 299.99887 * 16 14 12 35 35 H 1.09002 * 109.46777 * 60.00607 * 16 14 12 36 36 H 1.09000 * 109.47140 * 180.02562 * 16 14 12 37 37 H 0.97004 * 119.99507 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.97267 * 180.28014 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2759 1.0453 0.0000 4 8 3.6303 0.6418 0.0006 5 6 3.6975 -0.7045 0.0015 6 7 4.7082 -1.5613 0.0019 7 6 4.5114 -2.8630 0.0082 8 6 3.2344 -3.4027 0.0034 9 16 3.0078 -5.1501 0.0051 10 8 1.7171 -5.3867 0.5502 11 8 4.1957 -5.7082 0.5496 12 7 2.9442 -5.6378 -1.5762 13 6 1.6579 -5.6903 -2.2753 14 6 4.1742 -6.0166 -2.2759 15 1 5.0230 -5.9149 -1.5996 16 6 4.3741 -5.1031 -3.4869 17 6 4.0691 -7.4472 -2.7378 18 1 3.1753 -8.0171 -2.5312 19 6 5.1140 -8.0286 -3.4242 20 7 6.2027 -7.3348 -3.6754 21 14 4.9834 -9.8017 -3.9973 22 1 4.3940 -9.8394 -5.3598 23 1 6.3363 -10.4135 -4.0261 24 1 4.1163 -10.5618 -3.0617 25 6 2.1409 -2.5579 0.0029 26 6 2.3747 -1.1795 0.0020 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 5.3642 -3.5256 0.0126 31 1 1.2127 -6.6765 -2.1435 32 1 0.9902 -4.9325 -1.8653 33 1 1.8135 -5.5009 -3.3374 34 1 3.5254 -5.2051 -4.1630 35 1 4.4502 -4.0683 -3.1527 36 1 5.2891 -5.3852 -4.0078 37 1 6.9377 -7.7437 -4.1586 38 1 1.1349 -2.9508 0.0037 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:03 Heat of formation + Delta-G solvation = -8.781643 kcal Electronic energy + Delta-G solvation = -25852.559757 eV Core-core repulsion = 22017.726567 eV Total energy + Delta-G solvation = -3834.833191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.35686 -40.14069 -38.39645 -37.90488 -36.92982 -36.20394 -34.50178 -33.63504 -31.91358 -30.90097 -29.82085 -27.26437 -26.98557 -25.69648 -25.27913 -22.56795 -21.86467 -20.51578 -19.37093 -19.06593 -18.59386 -18.31778 -18.03615 -17.75528 -16.96428 -16.65947 -16.25338 -15.25129 -15.13116 -14.81277 -14.80705 -14.65895 -14.55075 -14.47818 -14.29877 -13.77662 -13.70122 -13.36603 -13.20220 -13.15668 -13.03541 -12.96078 -12.74755 -12.55642 -12.44046 -12.34787 -12.19565 -12.14280 -11.85263 -11.12834 -11.04925 -11.00650 -10.69703 -10.46163 -9.66455 -8.07681 -6.20564 -0.96373 -0.80189 -0.57546 0.67028 0.68741 1.46681 1.49800 1.58128 1.83352 2.18170 2.38315 2.48087 2.61927 2.74448 3.07349 3.21151 3.21902 3.46670 3.47721 3.83250 4.03729 4.11309 4.36943 4.39025 4.59929 4.64895 4.73511 4.82591 4.90457 4.98147 5.05716 5.13281 5.14539 5.26430 5.65465 5.68874 5.72932 5.89628 6.13332 6.13962 6.32561 6.87159 7.48635 8.96405 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003815 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.389869 B = 7338.194261 C = 7659.777732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.177 3.823 3 N -0.298 5.298 4 O -0.113 6.113 5 C 0.309 3.691 6 N -0.511 5.511 7 C 0.265 3.735 8 C -0.763 4.763 9 S 2.709 3.291 10 O -0.966 6.966 11 O -0.981 6.981 12 N -0.984 5.984 13 C 0.094 3.906 14 C 0.269 3.731 15 H 0.036 0.964 16 C -0.139 4.139 17 C -0.533 4.533 18 H 0.062 0.938 19 C 0.019 3.981 20 N -0.914 5.914 21 Si 0.953 3.047 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.271 1.271 25 C 0.130 3.870 26 C -0.271 4.271 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.195 0.805 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.263 0.737 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 11.557 4.847 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.004 4.004 3 N -0.051 5.051 4 O -0.111 6.111 5 C 0.127 3.873 6 N -0.232 5.232 7 C 0.102 3.898 8 C -0.850 4.850 9 S 2.798 3.202 10 O -0.956 6.956 11 O -0.971 6.971 12 N -0.824 5.824 13 C -0.051 4.051 14 C 0.165 3.835 15 H 0.054 0.946 16 C -0.199 4.199 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.181 4.181 20 N -0.553 5.553 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.196 1.196 25 C 0.102 3.898 26 C -0.278 4.278 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.212 0.788 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.338 12.845 5.489 19.314 hybrid contribution 0.278 -1.224 -0.703 1.439 sum -13.061 11.621 4.786 18.125 Atomic orbital electron populations 1.20980 0.79507 1.07509 1.07083 1.25358 1.00282 0.87067 0.87711 1.80106 0.83041 1.18215 1.23693 1.89237 1.25538 1.15412 1.80872 1.21026 0.91200 0.86600 0.88521 1.66867 1.33298 1.02973 1.20076 1.22930 0.96470 0.88803 0.81640 1.32181 1.00910 1.29065 1.22877 1.01456 0.72816 0.73076 0.72870 1.93515 1.40336 1.84518 1.77254 1.93555 1.49748 1.76316 1.77496 1.57321 1.15053 1.79065 1.30941 1.21525 0.82275 1.02230 0.99055 1.18516 0.80512 0.93722 0.90792 0.94601 1.21958 1.02428 0.95926 0.99547 1.21622 1.02262 0.97554 1.35847 0.91940 1.25594 0.94969 1.01435 0.96092 1.69974 1.06135 1.37826 1.41384 0.85637 0.77183 0.80536 0.78759 1.19810 1.21382 1.19608 1.21313 1.00430 0.88993 0.79060 1.21635 0.92746 0.96690 1.16700 0.85781 0.87454 0.85940 0.78826 0.92968 0.89044 0.90459 0.93513 0.95411 0.91441 0.92741 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.48 71.24 0.75 0.20 16 2 C 0.18 3.18 7.46 45.00 0.34 3.51 16 3 N -0.30 -7.34 12.81 -43.56 -0.56 -7.89 16 4 O -0.11 -3.48 12.05 30.13 0.36 -3.12 16 5 C 0.31 9.36 8.64 85.16 0.74 10.09 16 6 N -0.51 -16.63 10.38 -308.20 -3.20 -19.83 16 7 C 0.27 8.10 10.66 84.81 0.90 9.00 16 8 C -0.76 -21.06 5.99 22.35 0.13 -20.93 16 9 S 2.71 89.83 5.65 -56.49 -0.32 89.51 16 10 O -0.97 -31.12 16.42 -128.00 -2.10 -33.23 16 11 O -0.98 -40.44 15.85 -128.00 -2.03 -42.47 16 12 N -0.98 -35.08 3.06 -520.46 -1.59 -36.67 16 13 C 0.09 2.64 9.53 127.77 1.22 3.86 16 14 C 0.27 12.08 2.62 44.25 0.12 12.20 16 15 H 0.04 1.81 6.91 -2.39 -0.02 1.79 16 16 C -0.14 -5.87 8.95 71.98 0.64 -5.23 16 17 C -0.53 -26.87 8.37 25.60 0.21 -26.66 16 18 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 19 C 0.02 0.99 5.30 84.65 0.45 1.44 16 20 N -0.91 -49.41 11.32 21.45 0.24 -49.17 16 21 Si 0.95 41.44 29.54 68.60 2.03 43.47 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.13 2.74 9.69 22.64 0.22 2.96 16 26 C -0.27 -6.26 6.34 -20.20 -0.13 -6.39 16 27 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.12 0.16 8.14 -2.39 -0.02 0.15 16 30 H 0.20 5.73 7.60 -2.91 -0.02 5.71 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.76 7.79 -2.39 -0.02 1.74 16 33 H 0.08 2.14 6.43 -2.39 -0.02 2.12 16 34 H 0.05 1.82 6.66 -2.39 -0.02 1.80 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 3.27 6.07 -2.39 -0.01 3.25 16 37 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 38 H 0.20 2.53 7.70 -2.91 -0.02 2.50 16 Total: -1.00 -70.17 338.28 -0.47 -70.64 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.11 Total: 4.70 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 5.59 Total: -15.94 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -5.11 Total: -113.56 kcal Atomic # 8 Polarization: -75.04 SS G_CDS: -3.77 Total: -78.81 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 89.83 SS G_CDS: -0.32 Total: 89.51 kcal Total: -70.17 -0.47 -70.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.859 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds