Wall clock time and date at job start Tue Mar 31 2020 14:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86798 * 120.00213 * 2 1 4 4 H 1.48496 * 109.46877 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46862 * 299.99954 * 3 2 1 6 6 H 1.48502 * 109.46864 * 59.99912 * 3 2 1 7 7 C 1.38643 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 179.97438 * 7 2 1 9 9 O 1.34807 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.35772 * 116.99950 * 174.98667 * 9 7 2 11 11 C 1.38738 * 120.08693 * 5.13080 * 10 9 7 12 12 C 1.38346 * 119.97939 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.91951 * 180.02562 * 12 11 10 14 14 C 1.38560 * 120.15774 * 0.02562 * 12 11 10 15 15 C 1.38178 * 120.18065 * 359.69829 * 14 12 11 16 16 C 1.38731 * 120.01726 * 0.55868 * 15 14 12 17 17 N 1.39976 * 120.08183 * 179.74286 * 16 15 14 18 18 C 1.34777 * 119.99481 * 335.15790 * 17 16 15 19 19 O 1.21715 * 120.00101 * 354.32897 * 18 17 16 20 20 C 1.43209 * 119.99658 * 174.60275 * 18 17 16 21 21 C 7.60108 * 53.82545 * 185.98086 * 2 1 3 22 22 C 8.60860 * 46.65260 * 184.99695 * 2 1 3 23 23 C 1.39840 * 120.16962 * 74.87603 * 22 21 20 24 24 C 1.37894 * 119.82557 * 179.70094 * 23 22 21 25 25 C 1.38406 * 120.16853 * 0.57620 * 24 23 22 26 26 C 1.38404 * 120.34672 * 359.71881 * 25 24 23 27 27 C 1.37894 * 120.17022 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99609 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.01084 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.90749 * 180.02562 * 14 12 11 31 31 H 1.08004 * 119.98942 * 180.27483 * 15 14 12 32 32 H 0.96996 * 120.00686 * 155.15417 * 17 16 15 33 33 H 1.08000 * 120.08804 * 359.97438 * 23 22 21 34 34 H 1.08001 * 119.91554 * 180.29880 * 24 23 22 35 35 H 1.07995 * 119.82567 * 179.70293 * 25 24 23 36 36 H 1.07998 * 119.91291 * 179.97438 * 26 25 24 37 37 H 1.07999 * 120.08588 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0702 -3.5046 -0.1046 11 6 3.4561 -3.4392 -0.0988 12 6 4.2033 -4.5985 -0.2066 13 9 5.5527 -4.5336 -0.2002 14 6 3.5709 -5.8261 -0.3211 15 6 2.1911 -5.8994 -0.3220 16 6 1.4345 -4.7410 -0.2196 17 7 0.0367 -4.8131 -0.2257 18 6 -0.5815 -5.8585 -0.8102 19 8 0.0689 -6.6859 -1.4216 20 6 -2.0042 -5.9926 -0.7167 21 6 -3.1708 -6.1024 -0.6393 22 6 -4.5934 -6.2364 -0.5453 23 6 -5.3974 -5.9954 -1.6637 24 6 -6.7661 -6.1326 -1.5668 25 6 -7.3452 -6.4962 -0.3635 26 6 -6.5566 -6.7305 0.7495 27 6 -5.1860 -6.6036 0.6669 28 1 -0.4849 0.8401 -0.0004 29 1 3.9515 -2.4836 -0.0100 30 1 4.1582 -6.7287 -0.4046 31 1 1.7014 -6.8583 -0.4069 32 1 -0.4871 -4.1109 0.1906 33 1 -4.9473 -5.7068 -2.6021 34 1 -7.3881 -5.9515 -2.4310 35 1 -8.4181 -6.5974 -0.2926 36 1 -7.0160 -7.0135 1.6851 37 1 -4.5720 -6.7872 1.5362 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159419043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:26 Heat of formation + Delta-G solvation = 3.520512 kcal Electronic energy + Delta-G solvation = -24631.521926 eV Core-core repulsion = 20641.858283 eV Total energy + Delta-G solvation = -3989.663642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.29296 -40.24098 -39.38675 -38.64030 -36.38500 -34.32237 -34.06317 -32.45742 -31.27568 -30.75968 -29.48777 -28.45714 -25.60080 -24.58046 -22.85533 -22.80125 -22.07286 -21.10659 -18.96307 -18.41979 -17.94713 -17.37386 -16.79437 -16.19200 -15.53153 -15.30033 -15.28753 -15.03313 -14.73929 -14.61662 -14.29729 -14.11607 -13.76050 -13.74951 -13.58528 -13.43955 -13.24525 -12.39901 -12.29611 -11.81240 -11.75478 -11.62985 -11.54137 -11.35011 -11.07538 -10.81498 -10.60349 -10.54346 -10.07268 -9.88148 -9.59266 -9.28282 -9.01170 -8.81484 -7.95222 -7.16298 -6.64585 -4.22559 0.55909 1.08992 1.37261 1.98353 2.05939 2.53205 3.03562 3.05948 3.11440 3.16340 3.51019 3.72940 3.81010 4.19984 4.30024 4.64150 4.65555 4.77023 4.79760 4.92565 5.05777 5.06197 5.15463 5.25129 5.51901 5.66982 5.70429 5.70985 5.94318 6.07113 6.10223 6.15736 6.16941 6.46732 6.60158 6.66145 6.84440 6.87735 6.91666 7.11649 7.13642 7.56227 7.72064 7.79039 8.28401 8.80949 9.39968 10.52307 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.003053 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.727759 B = 9168.999851 C =11575.411146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.393 4.393 8 H 0.096 0.904 9 O -0.169 6.169 10 C 0.159 3.841 11 C -0.257 4.257 12 C 0.131 3.869 13 F -0.150 7.150 14 C -0.226 4.226 15 C -0.057 4.057 16 C 0.058 3.942 17 N -0.629 5.629 18 C 0.626 3.374 19 O -0.516 6.516 20 C -0.179 4.179 21 C -0.048 4.048 22 C 0.004 3.996 23 C -0.087 4.087 24 C -0.120 4.120 25 C -0.108 4.108 26 C -0.121 4.121 27 C -0.088 4.088 28 H 0.272 0.728 29 H 0.145 0.855 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.422 0.578 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -9.755 0.990 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.114 0.886 9 O -0.072 6.072 10 C 0.103 3.897 11 C -0.277 4.277 12 C 0.112 3.888 13 F -0.129 7.129 14 C -0.247 4.247 15 C -0.078 4.078 16 C -0.036 4.036 17 N -0.272 5.272 18 C 0.413 3.587 19 O -0.394 6.394 20 C -0.182 4.182 21 C -0.051 4.051 22 C 0.003 3.997 23 C -0.105 4.105 24 C -0.138 4.138 25 C -0.126 4.126 26 C -0.139 4.139 27 C -0.106 4.106 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.259 0.741 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.767 -10.088 0.604 14.767 hybrid contribution 0.488 1.314 0.158 1.410 sum -10.279 -8.774 0.762 13.536 Atomic orbital electron populations 1.70023 1.05969 1.28028 1.45076 1.25313 0.95924 0.98920 0.96060 0.85596 0.79278 0.79939 0.78399 1.18902 1.19981 1.19979 1.21413 0.92050 0.80221 1.53145 0.88616 1.83897 1.34064 1.11360 1.77833 1.18676 0.89531 0.86790 0.94703 1.20846 0.93285 0.98543 1.15069 1.17481 0.75987 0.94343 1.01021 1.91419 1.30074 1.97371 1.94033 1.20491 0.94510 0.95955 1.13704 1.20789 0.92381 0.97331 0.97270 1.16851 0.81418 0.91685 1.13687 1.42953 1.05659 1.23860 1.54699 1.14591 0.82372 0.82369 0.79319 1.90824 1.64912 1.42487 1.41210 1.20520 0.92248 1.02541 1.02863 1.19245 0.90869 0.98251 0.96695 1.16071 0.85756 1.02928 0.94898 1.21339 0.93587 0.97870 0.97743 1.21108 0.94419 1.00061 0.98236 1.21357 1.00164 0.98151 0.92881 1.21099 0.93236 1.00490 0.99043 1.21311 0.95179 0.97700 0.96412 0.91772 0.83778 0.85720 0.83420 0.74113 0.85126 0.85264 0.85612 0.85276 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.32 13.67 55.48 0.76 -22.56 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 3 Si 0.94 19.53 29.55 -169.99 -5.02 14.51 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.24 9.49 30.88 0.29 -9.95 16 8 H 0.10 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.36 9.17 0.04 0.00 -4.36 16 10 C 0.16 3.63 6.67 -38.93 -0.26 3.37 16 11 C -0.26 -5.51 9.14 -39.36 -0.36 -5.87 16 12 C 0.13 2.58 7.29 -39.42 -0.29 2.30 16 13 F -0.15 -2.83 17.26 2.25 0.04 -2.79 16 14 C -0.23 -4.14 10.02 -39.48 -0.40 -4.54 16 15 C -0.06 -1.10 8.71 -39.42 -0.34 -1.44 16 16 C 0.06 1.20 6.45 -83.49 -0.54 0.66 16 17 N -0.63 -11.99 5.28 -11.90 -0.06 -12.05 16 18 C 0.63 11.51 7.45 -14.33 -0.11 11.40 16 19 O -0.52 -10.49 14.26 5.18 0.07 -10.42 16 20 C -0.18 -2.90 13.62 -38.83 -0.53 -3.43 16 21 C -0.05 -0.69 13.25 -38.83 -0.51 -1.21 16 22 C 0.00 0.04 5.74 -106.77 -0.61 -0.57 16 23 C -0.09 -0.90 9.77 -39.11 -0.38 -1.28 16 24 C -0.12 -0.99 10.03 -39.65 -0.40 -1.39 16 25 C -0.11 -0.81 10.04 -39.46 -0.40 -1.20 16 26 C -0.12 -0.97 10.03 -39.65 -0.40 -1.36 16 27 C -0.09 -0.88 9.77 -39.11 -0.38 -1.26 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.14 3.08 5.63 -52.48 -0.30 2.79 16 30 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 31 H 0.15 2.73 5.78 -52.48 -0.30 2.42 16 32 H 0.42 7.83 8.31 -40.82 -0.34 7.50 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -29.74 345.05 -7.60 -37.34 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -2.88 Total: 9.88 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -5.71 Total: -14.75 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.70 Total: -34.61 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.07 Total: -14.78 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.74 -7.60 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159419043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.861 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds