Wall clock time and date at job start Tue Mar 31 2020 14:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86798 * 120.00213 * 2 1 4 4 H 1.48496 * 109.46877 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46862 * 299.99954 * 3 2 1 6 6 H 1.48502 * 109.46864 * 59.99912 * 3 2 1 7 7 C 1.38643 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 179.97438 * 7 2 1 9 9 O 1.34807 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.35772 * 116.99950 * 174.98667 * 9 7 2 11 11 C 1.38738 * 120.08693 * 5.13080 * 10 9 7 12 12 C 1.38346 * 119.97939 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.91951 * 180.02562 * 12 11 10 14 14 C 1.38560 * 120.15774 * 0.02562 * 12 11 10 15 15 C 1.38178 * 120.18065 * 359.69829 * 14 12 11 16 16 C 1.38731 * 120.01726 * 0.55868 * 15 14 12 17 17 N 1.39976 * 120.08183 * 179.74286 * 16 15 14 18 18 C 1.34777 * 119.99481 * 335.15790 * 17 16 15 19 19 O 1.21715 * 120.00101 * 354.32897 * 18 17 16 20 20 C 1.43209 * 119.99658 * 174.60275 * 18 17 16 21 21 C 7.60108 * 53.82545 * 185.98086 * 2 1 3 22 22 C 8.60860 * 46.65260 * 184.99695 * 2 1 3 23 23 C 1.39840 * 120.16962 * 74.87603 * 22 21 20 24 24 C 1.37894 * 119.82557 * 179.70094 * 23 22 21 25 25 C 1.38406 * 120.16853 * 0.57620 * 24 23 22 26 26 C 1.38404 * 120.34672 * 359.71881 * 25 24 23 27 27 C 1.37894 * 120.17022 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99609 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.01084 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.90749 * 180.02562 * 14 12 11 31 31 H 1.08004 * 119.98942 * 180.27483 * 15 14 12 32 32 H 0.96996 * 120.00686 * 155.15417 * 17 16 15 33 33 H 1.08000 * 120.08804 * 359.97438 * 23 22 21 34 34 H 1.08001 * 119.91554 * 180.29880 * 24 23 22 35 35 H 1.07995 * 119.82567 * 179.70293 * 25 24 23 36 36 H 1.07998 * 119.91291 * 179.97438 * 26 25 24 37 37 H 1.07999 * 120.08588 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0702 -3.5046 -0.1046 11 6 3.4561 -3.4392 -0.0988 12 6 4.2033 -4.5985 -0.2066 13 9 5.5527 -4.5336 -0.2002 14 6 3.5709 -5.8261 -0.3211 15 6 2.1911 -5.8994 -0.3220 16 6 1.4345 -4.7410 -0.2196 17 7 0.0367 -4.8131 -0.2257 18 6 -0.5815 -5.8585 -0.8102 19 8 0.0689 -6.6859 -1.4216 20 6 -2.0042 -5.9926 -0.7167 21 6 -3.1708 -6.1024 -0.6393 22 6 -4.5934 -6.2364 -0.5453 23 6 -5.3974 -5.9954 -1.6637 24 6 -6.7661 -6.1326 -1.5668 25 6 -7.3452 -6.4962 -0.3635 26 6 -6.5566 -6.7305 0.7495 27 6 -5.1860 -6.6036 0.6669 28 1 -0.4849 0.8401 -0.0004 29 1 3.9515 -2.4836 -0.0100 30 1 4.1582 -6.7287 -0.4046 31 1 1.7014 -6.8583 -0.4069 32 1 -0.4871 -4.1109 0.1906 33 1 -4.9473 -5.7068 -2.6021 34 1 -7.3881 -5.9515 -2.4310 35 1 -8.4181 -6.5974 -0.2926 36 1 -7.0160 -7.0135 1.6851 37 1 -4.5720 -6.7872 1.5362 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159419043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:25 Heat of formation + Delta-G solvation = -11.949515 kcal Electronic energy + Delta-G solvation = -24632.192756 eV Core-core repulsion = 20641.858283 eV Total energy + Delta-G solvation = -3990.334473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85513 -41.82863 -40.33607 -40.09067 -38.08097 -35.82413 -35.19726 -34.34496 -31.96276 -31.76223 -31.11001 -30.01110 -27.47115 -25.81495 -24.18874 -23.53612 -23.49164 -22.58781 -20.34211 -20.21036 -19.42032 -18.53737 -18.39040 -17.19686 -17.01808 -16.89291 -16.58663 -16.33561 -16.11045 -15.99616 -15.90107 -15.51505 -15.30451 -14.99132 -14.78224 -14.40872 -14.30477 -14.07020 -13.89572 -13.49835 -13.17853 -12.69968 -12.52196 -12.45571 -12.41933 -12.32990 -12.12696 -11.75864 -11.65692 -11.56981 -11.20597 -10.86211 -9.97257 -9.66866 -9.60733 -8.83156 -8.53949 -6.20472 -0.34215 -0.05848 0.39487 0.40578 0.51516 1.36326 1.41112 1.42648 1.53258 1.87513 2.12011 2.19752 2.64261 2.86087 2.95547 3.00048 3.14507 3.40191 3.83343 3.97806 3.98393 4.00991 4.14589 4.24288 4.28092 4.46126 4.49588 4.56097 4.85575 4.90297 4.95943 5.06211 5.17140 5.23859 5.29374 5.36749 5.39202 5.40830 5.51177 5.89669 5.92575 5.95111 5.97034 6.19432 6.76217 6.90607 7.57000 8.66957 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.003053 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.727759 B = 9168.999851 C =11575.411146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.010 4.010 3 Si 1.014 2.986 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.416 4.416 8 H 0.103 0.897 9 O -0.204 6.204 10 C 0.134 3.866 11 C -0.260 4.260 12 C 0.128 3.872 13 F -0.142 7.142 14 C -0.199 4.199 15 C -0.059 4.059 16 C 0.056 3.944 17 N -0.632 5.632 18 C 0.636 3.364 19 O -0.539 6.539 20 C -0.234 4.234 21 C -0.006 4.006 22 C -0.039 4.039 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.096 4.096 26 C -0.121 4.121 27 C -0.094 4.094 28 H 0.275 0.725 29 H 0.140 0.860 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.421 0.579 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.932 -10.908 1.153 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.209 4.209 3 Si 0.834 3.166 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.110 6.110 10 C 0.081 3.919 11 C -0.281 4.281 12 C 0.108 3.892 13 F -0.121 7.121 14 C -0.219 4.219 15 C -0.079 4.079 16 C -0.038 4.038 17 N -0.274 5.274 18 C 0.425 3.575 19 O -0.418 6.418 20 C -0.237 4.237 21 C -0.008 4.008 22 C -0.039 4.039 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.114 4.114 26 C -0.139 4.139 27 C -0.112 4.112 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.180 0.820 31 H 0.177 0.823 32 H 0.258 0.742 33 H 0.148 0.852 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.869 -11.286 0.768 16.396 hybrid contribution 0.701 1.381 0.103 1.552 sum -11.168 -9.905 0.872 14.953 Atomic orbital electron populations 1.70140 1.07670 1.29022 1.47434 1.26441 0.96829 1.02264 0.95416 0.84581 0.78286 0.75148 0.78603 1.17807 1.19488 1.19172 1.21828 0.92637 0.80893 1.53763 0.87980 1.83886 1.34902 1.11952 1.80222 1.19016 0.90265 0.86822 0.95841 1.20926 0.93040 0.99295 1.14842 1.17461 0.76311 0.94174 1.01252 1.91441 1.29323 1.97336 1.93960 1.20897 0.94265 0.96725 1.10030 1.21005 0.92828 0.97103 0.96924 1.17143 0.82381 0.91611 1.12704 1.43007 1.05231 1.24188 1.54992 1.14685 0.83150 0.81422 0.78235 1.90777 1.65808 1.43111 1.42152 1.20128 0.92051 1.06035 1.05472 1.19840 0.91380 0.95590 0.94031 1.16336 0.84407 1.06423 0.96748 1.21499 0.94735 0.98050 0.97272 1.21459 0.93568 0.99229 0.99726 1.21838 1.01903 0.95578 0.92036 1.21478 0.92289 0.99530 1.00597 1.21507 0.96481 0.97425 0.95764 0.91563 0.84249 0.82010 0.82344 0.74195 0.85194 0.82658 0.82243 0.82434 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.42 13.67 21.61 0.30 -51.13 16 2 C -0.01 -0.52 5.49 84.83 0.47 -0.06 16 3 Si 1.01 40.73 29.55 68.60 2.03 42.75 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.42 -22.57 9.49 67.92 0.64 -21.92 16 8 H 0.10 5.17 5.20 -2.91 -0.02 5.16 16 9 O -0.20 -11.14 9.17 -22.76 -0.21 -11.35 16 10 C 0.13 6.33 6.67 22.69 0.15 6.49 16 11 C -0.26 -11.31 9.14 22.42 0.20 -11.11 16 12 C 0.13 4.86 7.29 22.37 0.16 5.02 16 13 F -0.14 -5.06 17.26 44.97 0.78 -4.29 16 14 C -0.20 -6.85 10.02 22.33 0.22 -6.62 16 15 C -0.06 -2.19 8.71 22.37 0.19 -2.00 16 16 C 0.06 2.38 6.45 38.26 0.25 2.63 16 17 N -0.63 -25.27 5.28 -309.76 -1.63 -26.90 16 18 C 0.64 24.35 7.45 85.49 0.64 24.98 16 19 O -0.54 -22.33 14.26 -4.40 -0.06 -22.39 16 20 C -0.23 -7.97 13.62 30.02 0.41 -7.56 16 21 C -0.01 -0.18 13.25 30.01 0.40 0.22 16 22 C -0.04 -0.92 5.74 -21.26 -0.12 -1.04 16 23 C -0.10 -1.93 9.77 22.58 0.22 -1.71 16 24 C -0.12 -1.68 10.03 22.23 0.22 -1.46 16 25 C -0.10 -1.08 10.04 22.35 0.22 -0.86 16 26 C -0.12 -1.58 10.03 22.23 0.22 -1.36 16 27 C -0.09 -1.75 9.77 22.58 0.22 -1.53 16 28 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.14 6.11 5.63 -2.91 -0.02 6.09 16 30 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.16 5.69 5.78 -2.91 -0.02 5.67 16 32 H 0.42 16.83 8.31 -92.71 -0.77 16.06 16 33 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -67.03 345.05 6.31 -60.72 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.39 Total: 30.45 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.73 Total: -17.87 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -1.34 Total: -78.03 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.27 Total: -33.74 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.78 Total: -4.29 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -67.03 6.31 -60.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159419043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.770 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds