Wall clock time and date at job start Tue Mar 31 2020 14:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48494 * 109.47069 * 239.99791 * 3 2 1 5 5 H 1.48499 * 109.47171 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46969 * 119.99625 * 3 2 1 7 7 C 1.38886 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 167.31453 * 7 2 1 9 9 N 1.37144 * 120.00165 * 347.31558 * 7 2 1 10 10 C 1.34772 * 119.99997 * 157.62180 * 9 7 2 11 11 O 1.21277 * 120.00356 * 185.07592 * 10 9 7 12 12 C 1.50706 * 119.99979 * 5.07627 * 10 9 7 13 13 H 1.08993 * 109.26072 * 27.99914 * 12 10 9 14 14 C 1.54136 * 109.27381 * 268.48899 * 12 10 9 15 15 S 1.83295 * 101.08931 * 211.55500 * 14 12 10 16 16 C 1.77431 * 96.60020 * 24.88057 * 15 14 12 17 17 C 1.38820 * 130.57439 * 164.56755 * 16 15 14 18 18 C 1.38026 * 120.16118 * 180.20476 * 17 16 15 19 19 C 1.38324 * 119.29111 * 0.02562 * 18 17 16 20 20 C 1.37699 * 120.54384 * 359.87537 * 19 18 17 21 21 C 1.38891 * 108.27681 * 344.56467 * 16 15 14 22 22 C 1.39782 * 119.99899 * 337.62431 * 9 7 2 23 23 C 1.38964 * 120.07938 * 291.99651 * 22 9 7 24 24 C 1.38077 * 119.92653 * 180.23210 * 23 22 9 25 25 C 1.38315 * 120.07563 * 359.51556 * 24 23 22 26 26 C 1.38308 * 120.15591 * 0.46295 * 25 24 23 27 27 C 1.38085 * 120.07592 * 359.78956 * 26 25 24 28 28 H 0.97007 * 120.00098 * 5.05163 * 1 2 3 29 29 H 1.08999 * 111.09190 * 329.51228 * 14 12 10 30 30 H 1.08997 * 111.09622 * 93.59837 * 14 12 10 31 31 H 1.08001 * 119.91580 * 0.22987 * 17 16 15 32 32 H 1.08000 * 120.35096 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.72447 * 179.89818 * 19 18 17 34 34 H 1.08001 * 119.46728 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.03601 * 359.95628 * 23 22 9 36 36 H 1.07992 * 119.96493 * 179.75025 * 24 23 22 37 37 H 1.07993 * 119.92531 * 180.25951 * 25 24 23 38 38 H 1.07997 * 119.96489 * 179.76797 * 26 25 24 39 39 H 1.08007 * 120.04024 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1020 1.6964 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0689 -1.2143 -0.2048 9 7 1.3480 -2.3759 0.2619 10 6 1.8622 -3.5475 -0.1615 11 8 1.2347 -4.5745 -0.0120 12 6 3.2171 -3.5816 -0.8206 13 1 3.8197 -2.7540 -0.4467 14 6 3.0448 -3.4370 -2.3455 15 16 4.4619 -4.4265 -2.9558 16 6 4.6168 -5.4647 -1.5252 17 6 5.2985 -6.6608 -1.3472 18 6 5.2709 -7.2992 -0.1238 19 6 4.5578 -6.7346 0.9183 20 6 3.8834 -5.5471 0.7422 21 6 3.9009 -4.8842 -0.4862 22 6 0.1414 -2.3563 0.9672 23 6 0.1254 -1.9993 2.3101 24 6 -1.0676 -1.9857 3.0051 25 6 -2.2473 -2.3172 2.3636 26 6 -2.2353 -2.6726 1.0271 27 6 -1.0451 -2.6934 0.3272 28 1 -0.4851 0.8368 -0.0740 29 1 2.0974 -3.8634 -2.6754 30 1 3.1323 -2.3951 -2.6532 31 1 5.8521 -7.0926 -2.1679 32 1 5.8005 -8.2297 0.0182 33 1 4.5302 -7.2290 1.8781 34 1 3.3317 -5.1219 1.5676 35 1 1.0457 -1.7370 2.8108 36 1 -1.0803 -1.7122 4.0498 37 1 -3.1796 -2.3017 2.9085 38 1 -3.1577 -2.9345 0.5302 39 1 -1.0363 -2.9715 -0.7164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172334837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:10 Heat of formation + Delta-G solvation = 37.869632 kcal Electronic energy + Delta-G solvation = -24968.212681 eV Core-core repulsion = 21546.251704 eV Total energy + Delta-G solvation = -3421.960977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.97190 -38.80491 -37.31494 -34.89568 -33.97566 -31.79765 -30.63035 -29.93972 -29.55531 -28.60068 -25.20910 -24.61868 -22.65283 -22.18632 -21.57399 -20.71631 -19.22520 -17.93478 -17.24082 -16.77158 -15.66042 -15.24686 -15.10367 -14.94641 -14.64779 -14.58385 -14.25532 -13.68417 -13.45852 -13.40174 -12.83713 -12.70918 -12.56938 -12.46902 -11.99859 -11.91604 -11.64908 -11.55951 -11.31964 -11.18734 -11.07860 -10.74006 -10.63487 -10.43148 -10.33055 -10.04641 -9.52878 -9.47921 -8.72759 -8.48822 -8.34507 -7.91592 -7.50467 -7.19316 -6.38596 -4.19472 1.38301 1.56428 1.85541 2.36372 2.44178 2.48030 3.01541 3.11552 3.12162 3.55770 3.82315 3.94840 4.43145 4.71727 4.75419 4.94708 5.09996 5.12289 5.28552 5.40132 5.50659 5.68876 5.74415 5.76343 5.84157 5.94746 5.96541 6.04162 6.11841 6.20615 6.36899 6.46351 6.50688 6.57759 6.72179 6.74711 6.97537 7.08510 7.20920 7.28341 7.40222 7.52360 7.68510 7.90852 8.28664 8.85444 9.19171 9.61355 10.50079 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.005058 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.481158 B = 5534.969353 C = 6759.402206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.051 3.949 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.364 4.364 8 H 0.101 0.899 9 N -0.404 5.404 10 C 0.477 3.523 11 O -0.578 6.578 12 C -0.062 4.062 13 H 0.119 0.881 14 C -0.053 4.053 15 S -0.165 6.165 16 C -0.077 4.077 17 C -0.095 4.095 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.068 4.068 22 C 0.237 3.763 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.149 4.149 26 C -0.119 4.119 27 C -0.078 4.078 28 H 0.275 0.725 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -5.416 0.481 7.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.158 4.158 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.490 4.490 8 H 0.119 0.881 9 N -0.119 5.119 10 C 0.265 3.735 11 O -0.462 6.462 12 C -0.084 4.084 13 H 0.137 0.863 14 C -0.201 4.201 15 S 0.077 5.923 16 C -0.189 4.189 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.143 4.143 20 C -0.090 4.090 21 C -0.074 4.074 22 C 0.146 3.854 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.167 4.167 26 C -0.137 4.137 27 C -0.098 4.098 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.412 -5.590 -0.602 7.804 hybrid contribution -0.331 1.170 1.076 1.623 sum 5.082 -4.420 0.474 6.751 Atomic orbital electron populations 1.69853 1.05769 1.28293 1.43826 1.25283 0.95442 0.99670 0.95422 0.86114 0.79204 0.80970 0.79216 1.19603 1.20686 1.19637 1.19521 0.93902 0.82819 1.52715 0.88112 1.41272 1.18804 1.05923 1.45862 1.19717 0.87817 0.83781 0.82193 1.90618 1.62184 1.33425 1.59959 1.20533 0.96741 0.96223 0.94863 0.86330 1.24170 0.98196 1.03194 0.94584 1.85774 1.42657 1.39588 1.24280 1.21961 1.02603 0.98234 0.96141 1.20299 1.00433 0.93166 0.97930 1.20991 0.99711 0.99663 0.92669 1.20914 0.98256 0.95941 0.99232 1.20820 0.97188 0.94633 0.96345 1.20505 0.97600 0.95166 0.94139 1.17143 0.85593 0.93284 0.89427 1.20889 0.97527 1.02063 0.93711 1.20663 0.92683 1.01879 0.98669 1.20736 0.97113 1.03788 0.95103 1.20701 0.96926 1.01604 0.94505 1.20776 0.91539 0.98994 0.98464 0.91439 0.88240 0.85752 0.85923 0.85554 0.85896 0.86088 0.87386 0.87589 0.87755 0.87573 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.88 10.76 55.49 0.60 -20.28 16 2 C 0.05 1.19 5.16 -17.49 -0.09 1.10 16 3 Si 0.92 18.42 29.57 -169.99 -5.03 13.40 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.36 -8.44 8.98 -14.94 -0.13 -8.57 16 8 H 0.10 2.17 5.87 -52.49 -0.31 1.86 16 9 N -0.40 -9.52 2.68 -58.98 -0.16 -9.67 16 10 C 0.48 10.77 5.95 -10.98 -0.07 10.71 16 11 O -0.58 -14.48 15.40 5.56 0.09 -14.40 16 12 C -0.06 -1.18 2.32 -92.24 -0.21 -1.39 16 13 H 0.12 2.21 6.07 -51.93 -0.32 1.90 16 14 C -0.05 -0.92 7.02 37.75 0.27 -0.66 16 15 S -0.17 -2.67 23.08 -107.50 -2.48 -5.15 16 16 C -0.08 -1.30 6.48 -39.12 -0.25 -1.56 16 17 C -0.09 -1.36 10.05 -39.44 -0.40 -1.76 16 18 C -0.11 -1.44 10.08 -39.63 -0.40 -1.84 16 19 C -0.12 -1.76 10.00 -39.75 -0.40 -2.16 16 20 C -0.07 -1.22 8.93 -39.27 -0.35 -1.57 16 21 C -0.07 -1.26 5.22 -103.79 -0.54 -1.80 16 22 C 0.24 5.63 2.60 -83.70 -0.22 5.41 16 23 C -0.12 -2.71 9.52 -39.37 -0.37 -3.09 16 24 C -0.12 -2.35 10.04 -39.61 -0.40 -2.75 16 25 C -0.15 -2.82 10.04 -39.53 -0.40 -3.21 16 26 C -0.12 -2.40 10.04 -39.61 -0.40 -2.79 16 27 C -0.08 -1.81 8.66 -39.37 -0.34 -2.15 16 28 H 0.27 6.60 8.32 -40.82 -0.34 6.27 16 29 H 0.10 1.82 7.92 -51.93 -0.41 1.41 16 30 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.12 2.19 7.81 -52.49 -0.41 1.78 16 35 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.10 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -27.80 342.49 -10.91 -38.71 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.39 Total: 10.30 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -4.70 Total: -18.07 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.44 Total: -29.95 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.40 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.48 Total: -5.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.80 -10.91 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172334837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.582 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds