Wall clock time and date at job start Tue Mar 31 2020 14:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48494 * 109.47069 * 239.99791 * 3 2 1 5 5 H 1.48499 * 109.47171 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46969 * 119.99625 * 3 2 1 7 7 C 1.38886 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 167.31453 * 7 2 1 9 9 N 1.37144 * 120.00165 * 347.31558 * 7 2 1 10 10 C 1.34772 * 119.99997 * 157.62180 * 9 7 2 11 11 O 1.21277 * 120.00356 * 185.07592 * 10 9 7 12 12 C 1.50706 * 119.99979 * 5.07627 * 10 9 7 13 13 H 1.08993 * 109.26072 * 27.99914 * 12 10 9 14 14 C 1.54136 * 109.27381 * 268.48899 * 12 10 9 15 15 S 1.83295 * 101.08931 * 211.55500 * 14 12 10 16 16 C 1.77431 * 96.60020 * 24.88057 * 15 14 12 17 17 C 1.38820 * 130.57439 * 164.56755 * 16 15 14 18 18 C 1.38026 * 120.16118 * 180.20476 * 17 16 15 19 19 C 1.38324 * 119.29111 * 0.02562 * 18 17 16 20 20 C 1.37699 * 120.54384 * 359.87537 * 19 18 17 21 21 C 1.38891 * 108.27681 * 344.56467 * 16 15 14 22 22 C 1.39782 * 119.99899 * 337.62431 * 9 7 2 23 23 C 1.38964 * 120.07938 * 291.99651 * 22 9 7 24 24 C 1.38077 * 119.92653 * 180.23210 * 23 22 9 25 25 C 1.38315 * 120.07563 * 359.51556 * 24 23 22 26 26 C 1.38308 * 120.15591 * 0.46295 * 25 24 23 27 27 C 1.38085 * 120.07592 * 359.78956 * 26 25 24 28 28 H 0.97007 * 120.00098 * 5.05163 * 1 2 3 29 29 H 1.08999 * 111.09190 * 329.51228 * 14 12 10 30 30 H 1.08997 * 111.09622 * 93.59837 * 14 12 10 31 31 H 1.08001 * 119.91580 * 0.22987 * 17 16 15 32 32 H 1.08000 * 120.35096 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.72447 * 179.89818 * 19 18 17 34 34 H 1.08001 * 119.46728 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.03601 * 359.95628 * 23 22 9 36 36 H 1.07992 * 119.96493 * 179.75025 * 24 23 22 37 37 H 1.07993 * 119.92531 * 180.25951 * 25 24 23 38 38 H 1.07997 * 119.96489 * 179.76797 * 26 25 24 39 39 H 1.08007 * 120.04024 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1020 1.6964 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0689 -1.2143 -0.2048 9 7 1.3480 -2.3759 0.2619 10 6 1.8622 -3.5475 -0.1615 11 8 1.2347 -4.5745 -0.0120 12 6 3.2171 -3.5816 -0.8206 13 1 3.8197 -2.7540 -0.4467 14 6 3.0448 -3.4370 -2.3455 15 16 4.4619 -4.4265 -2.9558 16 6 4.6168 -5.4647 -1.5252 17 6 5.2985 -6.6608 -1.3472 18 6 5.2709 -7.2992 -0.1238 19 6 4.5578 -6.7346 0.9183 20 6 3.8834 -5.5471 0.7422 21 6 3.9009 -4.8842 -0.4862 22 6 0.1414 -2.3563 0.9672 23 6 0.1254 -1.9993 2.3101 24 6 -1.0676 -1.9857 3.0051 25 6 -2.2473 -2.3172 2.3636 26 6 -2.2353 -2.6726 1.0271 27 6 -1.0451 -2.6934 0.3272 28 1 -0.4851 0.8368 -0.0740 29 1 2.0974 -3.8634 -2.6754 30 1 3.1323 -2.3951 -2.6532 31 1 5.8521 -7.0926 -2.1679 32 1 5.8005 -8.2297 0.0182 33 1 4.5302 -7.2290 1.8781 34 1 3.3317 -5.1219 1.5676 35 1 1.0457 -1.7370 2.8108 36 1 -1.0803 -1.7122 4.0498 37 1 -3.1796 -2.3017 2.9085 38 1 -3.1577 -2.9345 0.5302 39 1 -1.0363 -2.9715 -0.7164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172334837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:09 Heat of formation + Delta-G solvation = 26.271924 kcal Electronic energy + Delta-G solvation = -24968.715595 eV Core-core repulsion = 21546.251704 eV Total energy + Delta-G solvation = -3422.463891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58599 -40.19080 -38.90214 -36.65203 -35.40667 -33.60512 -31.83085 -31.58337 -30.97814 -30.10020 -26.99454 -26.11786 -23.95319 -23.57627 -23.21139 -22.16872 -20.94685 -19.50089 -18.57371 -18.42841 -17.30666 -16.68461 -16.51459 -16.39225 -16.24298 -16.11308 -15.67445 -15.27825 -14.96039 -14.84844 -14.34297 -14.12743 -14.07282 -13.95665 -13.56405 -13.31706 -13.22968 -13.17676 -12.85297 -12.69574 -12.46839 -12.27838 -12.11909 -12.05057 -11.96552 -11.38064 -11.23170 -10.78715 -10.38987 -10.12830 -9.74364 -9.57676 -9.22485 -8.46295 -8.16144 -6.03671 0.15945 0.35492 0.55780 0.74079 0.78641 1.10045 1.40497 1.46305 1.53586 1.85989 2.23219 2.59492 2.86253 3.03328 3.24593 3.35326 3.71960 3.88915 3.93749 4.15643 4.20925 4.22704 4.26988 4.38438 4.42288 4.49335 4.58269 4.60455 4.73754 4.79558 4.87821 4.99153 5.09228 5.28439 5.32634 5.39483 5.41616 5.53725 5.64283 5.76565 5.81314 5.95258 5.99681 6.22469 6.53416 7.04400 7.42318 7.84231 8.70589 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.005058 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.481158 B = 5534.969353 C = 6759.402206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.013 3.987 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.413 5.413 10 C 0.472 3.528 11 O -0.612 6.612 12 C -0.054 4.054 13 H 0.116 0.884 14 C -0.056 4.056 15 S -0.139 6.139 16 C -0.097 4.097 17 C -0.094 4.094 18 C -0.095 4.095 19 C -0.120 4.120 20 C -0.095 4.095 21 C -0.099 4.099 22 C 0.212 3.788 23 C -0.145 4.145 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.271 0.729 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.365 -6.247 1.144 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.500 4.500 8 H 0.129 0.871 9 N -0.128 5.128 10 C 0.261 3.739 11 O -0.498 6.498 12 C -0.076 4.076 13 H 0.133 0.867 14 C -0.205 4.205 15 S 0.103 5.897 16 C -0.210 4.210 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.140 4.140 20 C -0.115 4.115 21 C -0.105 4.105 22 C 0.121 3.879 23 C -0.165 4.165 24 C -0.135 4.135 25 C -0.162 4.162 26 C -0.138 4.138 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.190 0.810 33 H 0.169 0.831 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.151 0.849 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.505 -6.421 0.061 9.140 hybrid contribution -0.693 1.308 0.926 1.746 sum 5.811 -5.113 0.987 7.803 Atomic orbital electron populations 1.70013 1.07027 1.28488 1.44838 1.26032 0.96076 1.02280 0.94934 0.85166 0.77930 0.77017 0.79448 1.18564 1.21119 1.19397 1.19873 0.94492 0.83019 1.52629 0.87120 1.41506 1.19014 1.06315 1.45922 1.20304 0.88830 0.83095 0.81645 1.90561 1.63481 1.34411 1.61328 1.20472 0.94514 0.97255 0.95359 0.86650 1.24079 0.98539 1.04084 0.93761 1.85550 1.41153 1.39214 1.23758 1.22239 1.03508 0.99472 0.95747 1.20775 0.99516 0.91981 0.99479 1.21508 0.98191 1.00497 0.91237 1.21287 0.97039 0.94541 1.01108 1.20882 0.98612 0.96380 0.95610 1.20518 0.99191 0.95426 0.95350 1.17453 0.85848 0.94301 0.90332 1.21035 0.98645 1.03329 0.93500 1.21099 0.91868 1.00287 1.00210 1.21196 0.98580 1.01861 0.94546 1.21070 0.96792 1.00586 0.95387 1.20784 0.92973 1.01159 0.97769 0.91914 0.89916 0.84934 0.83108 0.81031 0.83066 0.88318 0.87996 0.84113 0.83510 0.84916 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.25 10.76 21.65 0.23 -44.01 16 2 C 0.01 0.61 5.16 84.91 0.44 1.05 16 3 Si 0.98 38.14 29.57 68.60 2.03 40.16 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.29 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.37 -18.05 8.98 84.02 0.75 -17.30 16 8 H 0.11 4.94 5.87 -2.91 -0.02 4.92 16 9 N -0.41 -20.58 2.68 -458.90 -1.23 -21.81 16 10 C 0.47 22.70 5.95 87.66 0.52 23.22 16 11 O -0.61 -32.68 15.40 -3.02 -0.05 -32.73 16 12 C -0.05 -2.18 2.32 -11.84 -0.03 -2.20 16 13 H 0.12 4.55 6.07 -2.39 -0.01 4.54 16 14 C -0.06 -2.04 7.02 72.37 0.51 -1.53 16 15 S -0.14 -4.44 23.08 -56.49 -1.30 -5.74 16 16 C -0.10 -3.22 6.48 22.57 0.15 -3.08 16 17 C -0.09 -2.45 10.05 22.36 0.22 -2.23 16 18 C -0.10 -2.12 10.08 22.24 0.22 -1.90 16 19 C -0.12 -3.20 10.00 22.16 0.22 -2.98 16 20 C -0.09 -3.37 8.93 22.47 0.20 -3.17 16 21 C -0.10 -3.74 5.22 -19.32 -0.10 -3.84 16 22 C 0.21 10.53 2.60 38.22 0.10 10.63 16 23 C -0.15 -6.61 9.52 22.41 0.21 -6.40 16 24 C -0.12 -4.41 10.04 22.25 0.22 -4.19 16 25 C -0.14 -5.15 10.04 22.30 0.22 -4.93 16 26 C -0.12 -4.82 10.04 22.25 0.22 -4.59 16 27 C -0.11 -5.19 8.66 22.41 0.19 -5.00 16 28 H 0.27 13.34 8.32 -92.70 -0.77 12.57 16 29 H 0.08 3.23 7.92 -2.39 -0.02 3.22 16 30 H 0.13 4.46 8.14 -2.39 -0.02 4.44 16 31 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.10 3.83 7.81 -2.91 -0.02 3.81 16 35 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 36 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.08 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -63.45 342.49 5.04 -58.41 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 1.07 Total: 34.16 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.29 Total: -28.44 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -1.00 Total: -65.82 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.05 Total: -32.73 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.16 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -1.30 Total: -5.74 kcal Total: -63.45 5.04 -58.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172334837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.685 kcal (2) G-P(sol) polarization free energy of solvation -63.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds