Wall clock time and date at job start Tue Mar 31 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99996 * 2 1 4 4 H 1.48503 * 109.47193 * 240.00350 * 3 2 1 5 5 H 1.48493 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47141 * 120.00626 * 3 2 1 7 7 C 1.38729 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99395 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00368 * 359.97438 * 7 2 1 10 10 C 1.76203 * 99.99947 * 174.99878 * 9 7 2 11 11 C 1.39223 * 120.01736 * 274.98470 * 10 9 7 12 12 C 1.38137 * 120.19949 * 180.02562 * 11 10 9 13 13 C 1.38086 * 120.24653 * 0.02562 * 12 11 10 14 14 C 1.39628 * 120.03440 * 359.97438 * 13 12 11 15 15 C 1.47870 * 120.10013 * 179.97438 * 14 13 12 16 16 O 1.21545 * 119.99905 * 187.41326 * 15 14 13 17 17 N 1.34772 * 119.99668 * 7.41153 * 15 14 13 18 18 C 1.46640 * 126.56182 * 174.66825 * 17 15 14 19 19 C 1.50775 * 107.70200 * 179.97438 * 18 17 15 20 20 C 1.38446 * 131.20402 * 179.97438 * 19 18 17 21 21 C 1.38149 * 120.10502 * 180.02562 * 20 19 18 22 22 C 1.38257 * 119.96030 * 359.97438 * 21 20 19 23 23 C 1.38152 * 119.95915 * 0.02562 * 22 21 20 24 24 C 1.38067 * 108.86106 * 0.02562 * 19 18 17 25 25 C 1.46631 * 126.56684 * 354.65468 * 17 15 14 26 26 C 1.38835 * 120.02357 * 95.22108 * 10 9 7 27 27 H 0.97004 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.90371 * 359.97438 * 11 10 9 29 29 H 1.07997 * 119.87757 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.98319 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.80605 * 60.43653 * 18 17 15 32 32 H 1.08996 * 109.81534 * 299.53608 * 18 17 15 33 33 H 1.08006 * 119.94927 * 0.02562 * 20 19 18 34 34 H 1.07998 * 120.02340 * 179.97438 * 21 20 19 35 35 H 1.07999 * 120.01945 * 179.97438 * 22 21 20 36 36 H 1.08003 * 119.94451 * 179.97438 * 23 22 21 37 37 H 1.08995 * 109.81430 * 60.46604 * 25 17 15 38 38 H 1.09000 * 109.86382 * 299.59610 * 25 17 15 39 39 H 1.08005 * 120.11554 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0098 -1.2015 -0.0005 8 1 3.0898 -1.2015 -0.0010 9 16 1.1288 -2.7274 -0.0005 10 6 2.4728 -3.8567 -0.1526 11 6 2.9802 -4.1701 -1.4106 12 6 4.0334 -5.0554 -1.5342 13 6 4.5897 -5.6357 -0.4115 14 6 4.0887 -5.3284 0.8551 15 6 4.6830 -5.9494 2.0584 16 8 4.1632 -5.7881 3.1451 17 7 5.8009 -6.6943 1.9498 18 6 6.5692 -7.2822 3.0518 19 6 7.7343 -8.0278 2.4518 20 6 8.7552 -8.7523 3.0429 21 6 9.7223 -9.3524 2.2599 22 6 9.6705 -9.2298 0.8837 23 6 8.6519 -8.5069 0.2934 24 6 7.6832 -7.9044 1.0776 25 6 6.4816 -7.0722 0.7073 26 6 3.0232 -4.4381 0.9816 27 1 -0.4851 0.8400 0.0004 28 1 2.5485 -3.7205 -2.2926 29 1 4.4226 -5.2951 -2.5126 30 1 5.4133 -6.3269 -0.5130 31 1 5.9397 -7.9716 3.6144 32 1 6.9344 -6.4935 3.7096 33 1 8.7958 -8.8486 4.1179 34 1 10.5184 -9.9170 2.7224 35 1 10.4262 -9.6982 0.2707 36 1 8.6119 -8.4110 -0.7816 37 1 6.8023 -6.1769 0.1747 38 1 5.8083 -7.6547 0.0785 39 1 2.6294 -4.1994 1.9585 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175772706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:43 Heat of formation + Delta-G solvation = 48.659126 kcal Electronic energy + Delta-G solvation = -23256.824510 eV Core-core repulsion = 19835.331401 eV Total energy + Delta-G solvation = -3421.493109 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15360 -39.43660 -37.79240 -36.41550 -32.51334 -32.31938 -31.66382 -30.64285 -30.43803 -28.04848 -26.04449 -25.57201 -23.15239 -22.61729 -21.77487 -21.49792 -20.02969 -18.06534 -17.10434 -17.03511 -16.40410 -16.39226 -15.69442 -15.41644 -14.95064 -14.85616 -14.34878 -14.22509 -13.99939 -13.74115 -13.51094 -13.34143 -13.30009 -12.90368 -12.72576 -12.59183 -12.23436 -11.86292 -11.38121 -11.17138 -11.15570 -11.07607 -10.99321 -10.62854 -10.04646 -9.84899 -9.45815 -9.24564 -9.15531 -9.02755 -8.70646 -8.50464 -8.03060 -6.71875 -6.28883 -4.02944 0.87384 0.94591 1.14018 1.65366 2.64436 2.95604 3.20085 3.21556 3.25915 3.29749 3.45387 3.83432 4.06389 4.07404 4.24447 4.56779 4.59993 4.66659 4.90735 5.05858 5.06972 5.08341 5.12548 5.16061 5.24010 5.29536 5.30485 5.47191 5.54463 5.60168 5.69592 5.81124 5.86053 5.96614 6.03477 6.08065 6.22723 6.23986 6.52762 6.55735 6.63876 6.91942 7.18653 7.30863 7.56652 8.11009 8.31869 9.16617 10.77826 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.002572 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.279313 B =10883.739040 C =10968.679363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.075 0.925 9 S -0.034 6.034 10 C -0.107 4.107 11 C -0.053 4.053 12 C -0.141 4.141 13 C -0.124 4.124 14 C -0.151 4.151 15 C 0.589 3.411 16 O -0.527 6.527 17 N -0.617 5.617 18 C 0.151 3.849 19 C -0.101 4.101 20 C -0.096 4.096 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.094 4.094 24 C -0.110 4.110 25 C 0.137 3.863 26 C -0.018 4.018 27 H 0.270 0.730 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.989 -18.824 -0.499 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.668 4.668 8 H 0.093 0.907 9 S 0.201 5.799 10 C -0.217 4.217 11 C -0.074 4.074 12 C -0.161 4.161 13 C -0.142 4.142 14 C -0.156 4.156 15 C 0.381 3.619 16 O -0.403 6.403 17 N -0.351 5.351 18 C 0.028 3.972 19 C -0.102 4.102 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.112 4.112 24 C -0.110 4.110 25 C 0.015 3.985 26 C -0.040 4.040 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.164 0.836 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.228 -18.688 0.204 25.418 hybrid contribution 1.988 1.177 -0.201 2.319 sum 19.216 -17.511 0.003 25.998 Atomic orbital electron populations 1.69977 1.05893 1.27785 1.46911 1.24998 0.95128 0.99091 0.94357 0.86175 0.79234 0.80898 0.78998 1.19854 1.20727 1.19789 1.22791 0.94839 0.90206 1.58965 0.90690 1.83627 1.04021 0.97051 1.95223 1.22832 1.02983 1.02004 0.93916 1.22038 0.93807 0.93911 0.97665 1.21111 0.97904 0.98954 0.98144 1.22394 1.00097 0.99785 0.91933 1.19671 1.00676 1.03034 0.92218 1.18030 0.77765 0.76880 0.89233 1.90791 1.60250 1.60560 1.28704 1.47744 1.26750 1.53215 1.07436 1.20172 0.90194 0.96895 0.89906 1.20352 0.96431 0.98703 0.94714 1.20499 0.93518 0.97185 1.00226 1.21097 0.98634 0.99635 0.93905 1.21095 0.98272 0.99075 0.95036 1.20502 0.93604 0.97267 0.99833 1.20419 0.96759 0.99281 0.94551 1.20834 0.91405 0.98252 0.88025 1.21890 0.91187 0.91379 0.99536 0.91993 0.85092 0.85853 0.83631 0.89767 0.89815 0.85606 0.85450 0.85417 0.85485 0.88780 0.88876 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 2 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.70 9.46 30.91 0.29 -14.41 16 8 H 0.07 2.09 7.79 -52.48 -0.41 1.68 16 9 S -0.03 -0.88 21.41 -107.50 -2.30 -3.18 16 10 C -0.11 -2.30 5.45 -38.99 -0.21 -2.51 16 11 C -0.05 -0.97 9.79 -39.25 -0.38 -1.35 16 12 C -0.14 -2.05 10.02 -39.67 -0.40 -2.44 16 13 C -0.12 -1.73 8.68 -39.12 -0.34 -2.07 16 14 C -0.15 -2.60 5.87 -105.00 -0.62 -3.22 16 15 C 0.59 9.94 7.83 -12.32 -0.10 9.84 16 16 O -0.53 -10.61 16.75 5.33 0.09 -10.52 16 17 N -0.62 -8.07 3.34 -178.49 -0.60 -8.67 16 18 C 0.15 1.69 6.91 -5.08 -0.04 1.65 16 19 C -0.10 -0.97 6.22 -104.57 -0.65 -1.62 16 20 C -0.10 -0.74 10.05 -39.54 -0.40 -1.14 16 21 C -0.11 -0.75 10.05 -39.61 -0.40 -1.15 16 22 C -0.12 -0.75 10.05 -39.61 -0.40 -1.15 16 23 C -0.09 -0.68 10.05 -39.54 -0.40 -1.08 16 24 C -0.11 -1.00 6.22 -104.57 -0.65 -1.65 16 25 C 0.14 1.35 4.89 -5.09 -0.02 1.32 16 26 C -0.02 -0.37 9.34 -38.92 -0.36 -0.73 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.15 1.50 2.81 -54.09 -0.15 1.35 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 37 H 0.09 0.86 6.76 -51.93 -0.35 0.51 16 38 H 0.09 0.80 6.80 -51.93 -0.35 0.45 16 39 H 0.14 3.01 7.67 -52.48 -0.40 2.60 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -33.41 346.71 -11.22 -44.63 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.19 Total: 0.59 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -5.16 Total: -19.75 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.14 Total: -33.40 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.41 -11.22 -44.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175772706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.294 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds