Wall clock time and date at job start Tue Mar 31 2020 14:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00269 * 2 1 4 4 O 1.20829 * 119.99851 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00238 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47148 * 180.02562 * 5 3 2 7 7 C 1.36885 * 119.99669 * 277.87742 * 6 5 3 8 8 H 1.07999 * 120.00076 * 51.23368 * 7 6 5 9 9 C 1.39040 * 119.99806 * 231.23232 * 7 6 5 10 10 N 1.31367 * 120.00227 * 39.31535 * 9 7 6 11 11 Si 1.86806 * 120.00008 * 219.31063 * 9 7 6 12 12 H 1.48500 * 109.47191 * 5.00379 * 11 9 7 13 13 H 1.48502 * 109.47064 * 125.00253 * 11 9 7 14 14 H 1.48495 * 109.47125 * 245.00150 * 11 9 7 15 15 C 1.34771 * 120.00198 * 97.87690 * 6 5 3 16 16 O 1.21598 * 120.00281 * 186.19839 * 15 6 5 17 17 C 1.47654 * 119.99846 * 6.20086 * 15 6 5 18 18 C 1.39696 * 120.16075 * 317.06380 * 17 15 6 19 19 C 1.37877 * 119.85423 * 179.97438 * 18 17 15 20 20 C 1.50701 * 119.89821 * 180.28220 * 19 18 17 21 21 C 1.38435 * 120.19329 * 0.02562 * 19 18 17 22 22 C 1.50701 * 119.83639 * 179.97438 * 21 19 18 23 23 C 1.38285 * 120.32580 * 359.97438 * 21 19 18 24 24 C 1.38129 * 120.13918 * 0.02562 * 23 21 19 25 25 Cl 1.73602 * 120.09562 * 180.02562 * 24 23 21 26 26 H 1.08995 * 109.46713 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47023 * 300.00051 * 1 2 3 28 28 H 1.09000 * 109.46827 * 60.00316 * 1 2 3 29 29 H 1.08994 * 109.47094 * 60.00161 * 5 3 2 30 30 H 1.09002 * 109.47120 * 299.99558 * 5 3 2 31 31 H 0.96995 * 120.00101 * 184.98597 * 10 9 7 32 32 H 1.07998 * 120.06737 * 0.02562 * 18 17 15 33 33 H 1.09002 * 109.47066 * 264.49887 * 20 19 18 34 34 H 1.08997 * 109.47681 * 24.50253 * 20 19 18 35 35 H 1.09001 * 109.47039 * 144.50157 * 20 19 18 36 36 H 1.08998 * 109.46924 * 89.99850 * 22 21 19 37 37 H 1.08996 * 109.47402 * 210.00164 * 22 21 19 38 38 H 1.09002 * 109.46820 * 330.00018 * 22 21 19 39 39 H 1.08002 * 119.92490 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.0195 3.3828 -1.1737 8 1 3.1593 3.3901 -1.8267 9 6 5.1653 4.0875 -1.5254 10 7 6.3510 3.5736 -1.2892 11 14 5.0187 5.7651 -2.3339 12 1 3.5906 6.1696 -2.3794 13 1 5.7907 6.7619 -1.5493 14 1 5.5583 5.6975 -3.7157 15 6 4.3267 3.2798 1.1565 16 8 4.5624 4.4726 1.1758 17 6 4.4185 2.4889 2.4000 18 6 3.4397 1.5389 2.7015 19 6 3.5319 0.8036 3.8641 20 6 2.4799 -0.2260 4.1872 21 6 4.5909 1.0045 4.7328 22 6 4.6834 0.1966 6.0016 23 6 5.5641 1.9428 4.4420 24 6 5.4852 2.6871 3.2811 25 17 6.7080 3.8643 2.9168 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9565 0.7805 0.8892 31 1 7.1496 4.0945 -1.4675 32 1 2.6130 1.3804 2.0249 33 1 1.7286 0.2154 4.8420 34 1 2.0057 -0.5627 3.2654 35 1 2.9445 -1.0754 4.6880 36 1 5.2490 -0.7155 5.8111 37 1 5.1875 0.7830 6.7698 38 1 3.6806 -0.0620 6.3416 39 1 6.3873 2.0945 5.1246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180880854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:38 Heat of formation + Delta-G solvation = -80.253118 kcal Electronic energy + Delta-G solvation = -26393.112316 eV Core-core repulsion = 22520.843432 eV Total energy + Delta-G solvation = -3872.268884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41690 -39.49746 -37.91641 -36.11841 -35.91166 -34.29020 -33.08379 -32.28837 -31.65523 -28.65805 -27.87351 -26.51131 -26.37891 -24.54458 -22.24233 -21.61862 -20.74171 -19.25993 -17.36520 -17.11676 -16.59157 -16.39927 -15.87122 -15.50937 -15.30797 -14.74014 -14.45046 -14.04569 -13.92577 -13.51652 -13.46370 -13.02595 -12.85262 -12.81125 -12.63261 -12.45733 -12.21018 -12.07277 -11.78849 -11.70496 -11.54249 -11.19987 -11.01048 -10.97369 -10.64953 -10.51974 -10.47722 -10.29992 -10.16496 -10.02103 -8.68652 -8.58916 -8.35143 -8.13874 -7.47823 -6.36027 -3.98448 1.20428 1.38159 2.63816 2.69263 2.99426 3.31893 3.48309 3.54955 3.57162 4.08247 4.42144 4.68661 4.79987 4.86406 5.02707 5.11485 5.21432 5.25833 5.28541 5.31440 5.39132 5.50600 5.52822 5.59307 5.65657 5.66501 5.72311 5.77464 5.80358 6.05936 6.08916 6.15100 6.34998 6.45562 6.61550 6.72980 6.94196 7.58047 8.11384 8.29965 8.82450 8.96804 9.41532 9.99760 10.66364 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.006990 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.336989 B = 4004.580530 C = 6331.923348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.368 6.368 3 C 0.433 3.567 4 O -0.485 6.485 5 C 0.095 3.905 6 N -0.416 5.416 7 C -0.363 4.363 8 H 0.081 0.919 9 C 0.100 3.900 10 N -0.814 5.814 11 Si 0.895 3.105 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.288 1.288 15 C 0.527 3.473 16 O -0.524 6.524 17 C -0.098 4.098 18 C -0.091 4.091 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.073 4.073 22 C -0.112 4.112 23 C -0.117 4.117 24 C 0.004 3.996 25 Cl -0.042 7.042 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.268 0.732 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 -11.873 11.020 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.285 6.285 3 C 0.274 3.726 4 O -0.370 6.370 5 C -0.031 4.031 6 N -0.138 5.138 7 C -0.488 4.488 8 H 0.099 0.901 9 C -0.114 4.114 10 N -0.445 5.445 11 Si 0.720 3.280 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.215 1.215 15 C 0.315 3.685 16 O -0.402 6.402 17 C -0.102 4.102 18 C -0.110 4.110 19 C -0.093 4.093 20 C -0.169 4.169 21 C -0.074 4.074 22 C -0.168 4.168 23 C -0.136 4.136 24 C -0.024 4.024 25 Cl -0.013 7.013 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.419 -10.841 10.896 15.993 hybrid contribution -0.096 0.940 -0.468 1.054 sum -4.515 -9.901 10.428 15.072 Atomic orbital electron populations 1.23152 0.77637 1.02912 1.02292 1.86550 1.22528 1.34537 1.84912 1.25220 0.93559 0.81181 0.72667 1.90689 1.66736 1.36154 1.43444 1.21602 0.85516 0.90338 1.05595 1.42804 1.59191 1.05630 1.06125 1.18713 0.98802 1.32086 0.99187 0.90137 1.25192 0.93949 0.98264 0.93968 1.70190 0.98199 1.34510 1.41581 0.86496 0.79262 0.84797 0.77457 1.19037 1.20302 1.21466 1.17852 0.81918 0.87010 0.81768 1.90657 1.50849 1.14223 1.84451 1.20393 0.94823 0.97514 0.97467 1.21342 0.98163 0.94728 0.96782 1.19695 0.96704 0.98586 0.94298 1.20801 0.96836 0.96856 1.02421 1.19699 0.94125 0.96890 0.96688 1.20802 1.02737 0.99310 0.93988 1.20815 0.99968 0.96693 0.96118 1.20944 0.92038 0.94207 0.95170 1.98401 1.52323 1.56105 1.94443 0.88637 0.92367 0.92204 0.86891 0.87781 0.92200 0.85596 0.91184 0.91324 0.91134 0.90931 0.91471 0.91176 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.70 10.56 -39.24 -0.41 -6.11 16 3 C 0.43 8.35 5.66 36.01 0.20 8.56 16 4 O -0.49 -11.03 15.98 -18.75 -0.30 -11.33 16 5 C 0.10 1.94 5.47 -5.19 -0.03 1.91 16 6 N -0.42 -10.63 2.06 -117.24 -0.24 -10.88 16 7 C -0.36 -10.18 8.54 -15.00 -0.13 -10.31 16 8 H 0.08 2.30 8.05 -52.49 -0.42 1.87 16 9 C 0.10 2.82 4.03 -17.45 -0.07 2.75 16 10 N -0.81 -23.10 13.80 55.50 0.77 -22.34 16 11 Si 0.89 22.61 29.69 -169.99 -5.05 17.56 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.53 13.66 6.62 -12.42 -0.08 13.58 16 16 O -0.52 -15.35 14.61 5.28 0.08 -15.27 16 17 C -0.10 -2.08 5.19 -104.94 -0.54 -2.62 16 18 C -0.09 -1.62 7.00 -39.17 -0.27 -1.89 16 19 C -0.09 -1.31 5.87 -104.68 -0.61 -1.92 16 20 C -0.11 -1.15 9.02 36.01 0.32 -0.83 16 21 C -0.07 -0.97 5.89 -104.53 -0.62 -1.59 16 22 C -0.11 -1.01 9.20 36.01 0.33 -0.68 16 23 C -0.12 -1.78 9.46 -39.60 -0.37 -2.16 16 24 C 0.00 0.08 6.34 -39.05 -0.25 -0.16 16 25 Cl -0.04 -0.88 26.94 -51.86 -1.40 -2.27 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.11 2.20 8.10 -51.93 -0.42 1.78 16 30 H 0.10 1.91 4.89 -51.93 -0.25 1.65 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.13 2.26 4.34 -52.49 -0.23 2.03 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 35 H 0.07 0.58 7.00 -51.93 -0.36 0.22 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.07 0.54 6.79 -51.93 -0.35 0.19 16 39 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -34.45 346.18 -6.94 -41.39 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.55 Total: -2.09 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.05 Total: 6.12 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.52 Total: -33.21 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.64 Total: -32.71 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.05 Total: 17.56 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.40 Total: -2.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.45 -6.94 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180880854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.859 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds