Wall clock time and date at job start Tue Mar 31 2020 14:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00269 * 2 1 4 4 O 1.20829 * 119.99851 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00238 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47148 * 180.02562 * 5 3 2 7 7 C 1.36885 * 119.99669 * 277.87742 * 6 5 3 8 8 H 1.07999 * 120.00076 * 51.23368 * 7 6 5 9 9 C 1.39040 * 119.99806 * 231.23232 * 7 6 5 10 10 N 1.31367 * 120.00227 * 39.31535 * 9 7 6 11 11 Si 1.86806 * 120.00008 * 219.31063 * 9 7 6 12 12 H 1.48500 * 109.47191 * 5.00379 * 11 9 7 13 13 H 1.48502 * 109.47064 * 125.00253 * 11 9 7 14 14 H 1.48495 * 109.47125 * 245.00150 * 11 9 7 15 15 C 1.34771 * 120.00198 * 97.87690 * 6 5 3 16 16 O 1.21598 * 120.00281 * 186.19839 * 15 6 5 17 17 C 1.47654 * 119.99846 * 6.20086 * 15 6 5 18 18 C 1.39696 * 120.16075 * 317.06380 * 17 15 6 19 19 C 1.37877 * 119.85423 * 179.97438 * 18 17 15 20 20 C 1.50701 * 119.89821 * 180.28220 * 19 18 17 21 21 C 1.38435 * 120.19329 * 0.02562 * 19 18 17 22 22 C 1.50701 * 119.83639 * 179.97438 * 21 19 18 23 23 C 1.38285 * 120.32580 * 359.97438 * 21 19 18 24 24 C 1.38129 * 120.13918 * 0.02562 * 23 21 19 25 25 Cl 1.73602 * 120.09562 * 180.02562 * 24 23 21 26 26 H 1.08995 * 109.46713 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47023 * 300.00051 * 1 2 3 28 28 H 1.09000 * 109.46827 * 60.00316 * 1 2 3 29 29 H 1.08994 * 109.47094 * 60.00161 * 5 3 2 30 30 H 1.09002 * 109.47120 * 299.99558 * 5 3 2 31 31 H 0.96995 * 120.00101 * 184.98597 * 10 9 7 32 32 H 1.07998 * 120.06737 * 0.02562 * 18 17 15 33 33 H 1.09002 * 109.47066 * 264.49887 * 20 19 18 34 34 H 1.08997 * 109.47681 * 24.50253 * 20 19 18 35 35 H 1.09001 * 109.47039 * 144.50157 * 20 19 18 36 36 H 1.08998 * 109.46924 * 89.99850 * 22 21 19 37 37 H 1.08996 * 109.47402 * 210.00164 * 22 21 19 38 38 H 1.09002 * 109.46820 * 330.00018 * 22 21 19 39 39 H 1.08002 * 119.92490 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.0195 3.3828 -1.1737 8 1 3.1593 3.3901 -1.8267 9 6 5.1653 4.0875 -1.5254 10 7 6.3510 3.5736 -1.2892 11 14 5.0187 5.7651 -2.3339 12 1 3.5906 6.1696 -2.3794 13 1 5.7907 6.7619 -1.5493 14 1 5.5583 5.6975 -3.7157 15 6 4.3267 3.2798 1.1565 16 8 4.5624 4.4726 1.1758 17 6 4.4185 2.4889 2.4000 18 6 3.4397 1.5389 2.7015 19 6 3.5319 0.8036 3.8641 20 6 2.4799 -0.2260 4.1872 21 6 4.5909 1.0045 4.7328 22 6 4.6834 0.1966 6.0016 23 6 5.5641 1.9428 4.4420 24 6 5.4852 2.6871 3.2811 25 17 6.7080 3.8643 2.9168 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9565 0.7805 0.8892 31 1 7.1496 4.0945 -1.4675 32 1 2.6130 1.3804 2.0249 33 1 1.7286 0.2154 4.8420 34 1 2.0057 -0.5627 3.2654 35 1 2.9445 -1.0754 4.6880 36 1 5.2490 -0.7155 5.8111 37 1 5.1875 0.7830 6.7698 38 1 3.6806 -0.0620 6.3416 39 1 6.3873 2.0945 5.1246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180880854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:37 Heat of formation + Delta-G solvation = -101.270410 kcal Electronic energy + Delta-G solvation = -26394.023694 eV Core-core repulsion = 22520.843432 eV Total energy + Delta-G solvation = -3873.180262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95086 -40.89065 -39.56924 -37.60625 -37.40718 -36.21652 -34.62891 -33.74431 -33.09122 -30.17252 -29.02250 -27.78689 -27.61014 -26.30030 -23.45949 -23.17251 -22.20890 -20.89648 -19.11533 -18.70854 -18.16464 -17.81502 -17.29522 -17.02047 -16.73724 -16.60496 -16.03363 -15.50366 -15.24459 -14.91935 -14.81474 -14.32728 -14.25301 -14.14763 -13.78220 -13.65329 -13.53980 -13.44415 -13.11428 -13.06003 -12.92476 -12.88630 -12.67797 -12.38750 -12.24062 -12.14402 -11.86834 -11.81060 -11.76213 -11.66134 -10.70590 -10.38354 -9.83861 -9.54971 -9.41017 -8.47862 -6.13565 -0.13603 0.11699 1.12616 1.22178 1.27388 1.39718 1.47617 1.59708 2.04486 2.31238 2.58443 2.93366 3.00663 3.63355 3.71085 3.83278 3.96554 4.09995 4.16593 4.18699 4.34772 4.35896 4.37174 4.51171 4.63667 4.66335 4.72636 4.83643 4.87327 4.94601 5.09262 5.21441 5.23695 5.26975 5.31453 5.41278 5.49655 5.82693 6.08578 6.74616 6.82113 6.94228 7.37963 8.01284 8.53669 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.006990 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.336989 B = 4004.580530 C = 6331.923348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.448 3.552 4 O -0.527 6.527 5 C 0.095 3.905 6 N -0.433 5.433 7 C -0.380 4.380 8 H 0.064 0.936 9 C 0.068 3.932 10 N -0.836 5.836 11 Si 0.937 3.063 12 H -0.275 1.275 13 H -0.290 1.290 14 H -0.263 1.263 15 C 0.519 3.481 16 O -0.576 6.576 17 C -0.136 4.136 18 C -0.098 4.098 19 C -0.083 4.083 20 C -0.113 4.113 21 C -0.054 4.054 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.017 4.017 25 Cl -0.071 7.071 26 H 0.143 0.857 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.269 0.731 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -15.254 13.638 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.290 3.710 4 O -0.415 6.415 5 C -0.030 4.030 6 N -0.153 5.153 7 C -0.506 4.506 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.468 5.468 11 Si 0.761 3.239 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.188 1.188 15 C 0.309 3.691 16 O -0.457 6.457 17 C -0.140 4.140 18 C -0.117 4.117 19 C -0.083 4.083 20 C -0.169 4.169 21 C -0.055 4.055 22 C -0.168 4.168 23 C -0.131 4.131 24 C -0.045 4.045 25 Cl -0.042 7.042 26 H 0.161 0.839 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.512 -14.288 13.493 20.410 hybrid contribution 0.088 1.801 -1.121 2.123 sum -5.424 -12.487 12.372 18.396 Atomic orbital electron populations 1.23581 0.74976 1.05941 1.02206 1.86514 1.24870 1.31824 1.83942 1.24719 0.92956 0.81625 0.71661 1.90680 1.67423 1.37778 1.45640 1.21631 0.86763 0.87637 1.06939 1.42876 1.59492 1.07508 1.05433 1.18660 0.98195 1.33877 0.99840 0.91819 1.25714 0.93881 1.00045 0.94695 1.70194 0.98425 1.35123 1.43061 0.85848 0.78399 0.81721 0.77891 1.19968 1.21591 1.18830 1.18608 0.80281 0.86987 0.83244 1.90587 1.52935 1.16530 1.85692 1.20109 0.97685 0.99837 0.96408 1.21338 0.97147 0.94763 0.98450 1.20174 0.97651 0.97978 0.92471 1.20944 0.96089 0.96552 1.03287 1.20289 0.92130 0.95357 0.97729 1.20969 1.04765 0.99449 0.91583 1.21182 1.01256 0.95951 0.94682 1.21189 0.91575 0.95008 0.96706 1.98380 1.53393 1.57581 1.94819 0.83947 0.91998 0.92921 0.86379 0.85544 0.92131 0.86286 0.89461 0.91143 0.88039 0.88759 0.90007 0.88980 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.34 10.56 -51.35 -0.54 -10.88 16 3 C 0.45 17.29 5.66 71.24 0.40 17.69 16 4 O -0.53 -24.53 15.98 21.95 0.35 -24.18 16 5 C 0.10 3.95 5.47 85.63 0.47 4.42 16 6 N -0.43 -23.03 2.06 -643.09 -1.33 -24.35 16 7 C -0.38 -22.36 8.54 84.10 0.72 -21.64 16 8 H 0.06 3.85 8.05 -2.91 -0.02 3.82 16 9 C 0.07 3.99 4.03 84.95 0.34 4.33 16 10 N -0.84 -49.29 13.80 21.68 0.30 -48.99 16 11 Si 0.94 48.17 29.69 68.60 2.04 50.20 16 12 H -0.27 -14.36 7.11 99.48 0.71 -13.65 16 13 H -0.29 -15.35 7.11 99.48 0.71 -14.64 16 14 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 15 C 0.52 28.16 6.62 86.73 0.57 28.74 16 16 O -0.58 -35.73 14.61 -4.03 -0.06 -35.79 16 17 C -0.14 -5.91 5.19 -20.07 -0.10 -6.01 16 18 C -0.10 -3.38 7.00 22.54 0.16 -3.22 16 19 C -0.08 -2.03 5.87 -19.90 -0.12 -2.15 16 20 C -0.11 -1.72 9.02 71.24 0.64 -1.08 16 21 C -0.05 -1.21 5.89 -19.81 -0.12 -1.33 16 22 C -0.11 -1.32 9.20 71.24 0.66 -0.66 16 23 C -0.11 -3.15 9.46 22.25 0.21 -2.94 16 24 C -0.02 -0.67 6.34 22.61 0.14 -0.53 16 25 Cl -0.07 -3.07 26.94 -2.72 -0.07 -3.14 16 26 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.05 1.22 8.13 -2.39 -0.02 1.21 16 29 H 0.12 4.69 8.10 -2.39 -0.02 4.67 16 30 H 0.13 4.63 4.89 -2.39 -0.01 4.62 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.12 4.20 4.34 -2.91 -0.01 4.18 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 35 H 0.10 0.98 7.00 -2.39 -0.02 0.97 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.09 0.77 6.79 -2.39 -0.02 0.76 16 39 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -81.71 346.18 6.95 -74.76 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.09 Total: 4.99 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 5.18 Total: 17.38 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.03 Total: -73.34 kcal Atomic # 8 Polarization: -70.60 SS G_CDS: -0.25 Total: -70.85 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.04 Total: 50.20 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.07 Total: -3.14 kcal Total: -81.71 6.95 -74.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180880854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.510 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds